>input_sequence_82594
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--------------------------------------------------------------ATGGAACCATGTCAGCCC
GTGCTCGAGGAGCCATGCACCGCCACCGTCGCCGAGGTGCTGAAGCTGGTGGAGGCGCCATCTGACGATCAAGGATGTCC
TATATGCTTTGGTCAGGAAGGCGGCA---CGATCGCGTGGAAGGAGACGGTGTGCGGACACATCTTTCATGGCCGAGGCG
TTGAGAAGTGGCTCGAGATGAAGGGAAGCTGTCCCATGTGTCGGCGCCAGCTTTTGGCACCACATACGGATGCAAAACAA
GACCCTCGCCGGGTAGATCCCTTCATATCATATGTGGC------------------------------------------
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-------------------------------------------------------TAGTTTTATGGCGTCTATTCCGGAC
ATGCACTCATCAGATTCATTCAATTATTTTAGACAGTACTTGTAA-----------------------------------
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-------------------
>chr3A_1_TraesCS3A01G309300
TGGGCCATGATTTCTATCTGTTTTGATCCAAACAGACGTGCGCCTACCTAATGGGGTTCGTGCGTAGAGTTGGCCTTAAT
TCCTTATAAATAACCCCCATCTTGAACATCCATCGCCATAACAGACGGCAGAGAAGAGAGGGGAAAGCCGATCTAGAGCT
TGGTCCTGAGATGGTCCACGTTCAGGCATATAATGCATTTAAGTTTGACGATCAACAAGACGAAGACAATGTAGATAGTA
CTACAACAGAAGACTACCGACTCATAATTCCCATGCATGATGTGACTGAATTTGCAATTTCCATGATCCGACGGAGCCCA
ACTCGTAATATGTGAGAGGTCATGGGCCTGACGAACGTGCCTAGGGCTGAACCATCCTCCATTGGCATCACGTCGCCATA
ATTCTTGGACTGTAAACATGCAGGAGGAACTGAATCAACTAACTTTAACCATGCCATGCCGCCATCTCGTTCTTTTGACC
GACGTGTCACGGGTCGCGGTGGAGCATCGGCCGATCGGGGTGGTACTACTTGGTTGGGCCAGCGATGTGAGTTCGTACCG
TGTGCGTCGCGGTCTGCACCGTTCCGACGAAGCGGGAGCAAAACATGTGTAGAGGAAACGGGCAT-----ACGCAAGCGG
GAGCGCCTGAGGCTGTTGGCCGATTCTTCCCGATGGTGGTGGACTGCGCAGTGTGGGCTGGGACCGATTCACGCTCGTAC
AACGGTACAAGTACAGGGACGACTTCCGCTGCGTATACGTTGATTGAT---CGTCCCTGAATCCTACTCGCCCATCGCTA
ACCGAT----TCCTACTCGCGTTGCTCAACTTTCCTCTCCATATATGCA----ACCCACACGCCCTCCCCAAACAACAAA
CGAACCACAGGAGCCAACTTCACTTTTGGCTGTCGGAACTAAATTCGCCGGTCACGCTAAAAACCCAAGTCAGCGATCAG
CCGGCCGGGAACTCGCCA-AAGTGCCGTGATTTGGTAGCGTAGAGAGCT-----CTTCTGGCATGGAACCATGTCAGCCC
GTGCTCGAGGAGCCATGCACCGCCACCGTCGCCGAGGTGCTGAAGCTGGTGGAGGCGCCATCTGACGATCAAGGATGTCC
TATATGCTTTGGTCAGGAAGGCGGCA---CGATCGCGTGGAAGGAGACGGTGTGCGGACACATCTTTCATGGCCGAGGCG
TTGAGAAGTGGCTCGAGATGAAGGGAAGCTGTCCCATGTGTCGGCGCCAGCTTTTGGCACCACATACGGATGCAAAACAA
GACCCTCGCCGGGTAGATCCCTTCATATCATATGTGGC------------------------------------------
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-------------------------------------------------------TAGTTTTATGGCGTCTATTCCGGAC
ATGCACTCATCAGATTCATTCAATTATTTTAGACAGTACTTGTAAGGGATGTCTGGAGGACATTGAAGACAATATTGATA
TAATGTGATACAGTTTGGTATATTTCCTCTTCCAAGTTAATACACACATGAGAGCACTTATGCCTCAGGTGCCTGATTTG
TGTGTCAGTGTCGGTGCGCACGCGTGTGTGTGTGTGTCAATCACGTTCATTTTTACCATGAGATTTTAATCCAATGGCCG
GTTTTCTCTTTATCTACCAGTTGCTTAAAAATAGAATACGGCTCGGTCACTTTTTTGGGGTTCTT--------------G
CCAAGTTCTTGTTGACTAGTTGCGAGCTTTCGGCCAGTAACTATCCTTTTGCTACGGCCCATTTCTAATTAAAACGTTTG
ATCAAATTAAGATGGTAAATGCATACACGAATACTATTTGGGACTTATGGCGCGTGTTAAAGGCTATTTCGTACACAACA
CCCCCTTCCCCGTCGTTCCATACTAAATGGGTCAGCCCATCCGACGCATGAGAGGGAAGATGGTCCCTGGTTTCTAGAAC
CCCCCATAAGTTTCCTGAATAAGGATGTCAATGGATCGGGTTCGACCCGGGTTGAACAATATCAAAACCATATCCAAATC
TATGAAGACATTATGTGCCCGTTCATGAAAAAATTCATGGGCGAAAAATAATGTCCATGTCCAAACCCGATGATATCCAT
CGGGTACTCTCAACACGTATACATATATCAAACATTGCACAAGTGCACAAGATTCACATAAGATCTCAAATTTTCACAAA
ACAACATAGCTCAAGTGCACAACATCAAATCATCTTTTAGATTCTAACAAGATGACATAAAAAAGTGCACATCACCAAAT
AATCTCTCAAATTCTCACATTACCAAATAATCTCTCAAATTCACAAGTGCGTATCATAGCAATAGCACAACATTTGTTTA
GATAATAGGCTATTGCCCGACCTTTGATTGAGGCTCTCAGATTCAAGATTCAAGTATAGACCAATCACAGTTGCAACTAC
ATTATAGAAGAGAGGTATC
>chr3D_606
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---------------------------------------------TGTCTAGAGGAAACGGGCATACGCAACGCAAGCGG
GAGCGCCTGAGGCTGTTGGCCGATTCCTGGGTGGGTGGAC--------CAGTGTGGGCCGGGACCGATTCACGCTCGTAC
AACGATACAGGTACAGGGACGACTTCCACTGCGTGTACGTTGATTGATGATCGTCCCTGAATCCTACTCGTCCATCGCTA
ACCGAT----TCCTACTCCCGTTGTGCAACTTTCCTCTCAATATATGCA----ACCCAAACGTC----------------
-------CAGCAGCCAACTTCACTTCTCGCCGTCCGAGCTAAATTCGCCGGTCACGCTAAAAACCCAAGTCAGCGATCAG
CCGGCCGGCAACTCACCG-AAGTGCTGTGATTTGGTAGCGTGGAGAGCTG-----TTGTGGCATGGAACCATGTCAGCCC
GGGCTCGAGGAGCCATGCACCGCCGCCGTGGGCGAGGTGC----------------------------------------
-ATATGCTTTGGTCAGGAGGGCGGCA---CGACCGCGTGGAAGGAGACGGTGTGCAGACACATCTTTCATGGCCGGTGGG
TTGAGAGGTGGCTCGAGATGAAGGGAAGCTGCCCCATGTGTCGGCGCCAGCTTTTGGCACCACATGCGGATGCAAAAAAA
GACGCTCGCCGAGTAGATCCCTTCATGTCATATGTGGC------------------------------------------
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-------------------------------------------------------TAGTTTCATGGCGTCTATTCCGGAC
ATGCACTCATCAGATTCATTCAATTATTTTAGGCAGTATTTGTAAGAGATGTCTGGAGGACATTGAAGACAATATTGGTA
TAATATGAAACAGTTTGGTATATTTCCTCTTCCAAGTTAATACACACATGAGAGCACTTATGCCTCAGGTGCCTGATTTG
TGTGT--------GTGTGCGCGCGAGCGCGTGTGTGTCAATCACTTCCATTTTTACCATGAGATTTTAATCCAACGGCCG
GTTTTCTCTCTATGTACCAGTTGCCTAAAATTATAATACGTCCCGGTCACTCTTTTTGTTCTTTGCAACGTGAATGCCAG
CCAAGTGCTTGTTGACTAGCTGCCGGCTTCCGACCTGAAACTATCCTTCTGCTACGGCAAATTGCTAA-TAAAATGTTTG
ATCAAATTAAGATGGTAAATGCATACACAAATCATATTTGGCACTTAAGGCGCGTGTTAAAGGTTATTTCGTACA-----
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>chr3D_674
GTGGACTGT-----------------------------------------------------------------------
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-------------------------------------------------AGTGTAGGCTGGGACCGAGTCACGCTGGTAC
AA--------GTACAGAGACGAC-TCCACTGCGTATACGTTGATTGAT---CGTCCCTGAATCCTACTCGTCCTTCGCTA
ACTGAT----TCCTACTCGCGTTGCGCAACTTTCCCCTCCATATATGCA----CCCCAAACGCCCTCCCCAAACAACCAA
CGAGCCACAGGAGCCAACTTCACTTTTCGCCGTCGGAACTAAATTCGCCCGTCACCCTAAAAACCCAAGTCAGCGATCAG
CCGGCCGGGAACTCACCGCAAGTGCTGTGATTTGGTAGCGTGGAGAGCT-----CTTCTGGCATGGAACCATGTCAGCCC
GGGCTCGAGGAGCCATGCACCACCACTGTGGGCCAGGTGCTGAAGCTGGTGGAGGCTCCATCCGACGGTCAAGGATGTCC
TATATGCTTTGGTCAAGAGGACGGCA---CGACCGCGTGGAAGGAGACGGTGTGCGGACATATCTTTCATGGCCGGTGCG
TTGAGAGGTGGCTCGAGATGAAGGGAAGCTGCCCCATGTGTCGGCGCCAGCTTTCGGCACCACATGCGGATGCAAAACAA
GACGCTCGCCGAGTAGATCCCTTCATGTCATATGTGGCTAGTTGTAACGCCCGGATAATCATGCTACAGTAATCTCACGT
TAATGATGGCATATCACCTCTGTCACTGTAATTAATCTCAGGATAATTCGAAACCGTTTCAAAAGTTAAATTCAATTTAA
TATCAATAATAAAAGTTTTCAAAAATTTAAAAAAAATGTTCGATGGGTGCCAGATATTGTACTGATAATTATTGTGGAGA
AAACACATTTTTATAAAATGCCTAAATACTTTTAAATGAATTAAAACAGAAAAAAATAAATAAAAAGAAAAGAAAATGCA
ACAGGGGAGAAACAAACAAACAAAAAAACAGAAGAAGAGAAACCCCCCTTCCCCCACTGGACCCTGGCTCAACTGGGCCG
ACCCCAGGCCCAGCCGGCCTGGCCCACCTCGCTCGACCGTGCCCTCCCCTTCCCTGTTCCCCCGACCGGGGTCGGAACAG
AGGCAGATCCCCGCCGCACCCCCTCGCCGGCGACGGGGGAGGATAAGGCCGCCAGCGCCCCCGCCCCCTCGGGCCCCTCT
CCCACTCGCCCCCGCTCACCCTCTCGGCCTCTGCGCCTCTCCCTCTTCCCCCCAGATCCACGCCGCTCCCTCCTTCCCCA
CCGCCCGAGCGCGGTCGCCGACGTGCCGCCGTCGTTTCCGCGGCCACCGAGCCCCGTTCTCCTCCCCGACGTGTCCACGA
GCTCCGCCGCGTCGAGCCCGTCCTCCCCGACCACCTGCTCGAGCCGGGACCCCCTACATCACCCCCAACGCCGTCGCCTT
CTTCCTCGGGTCGCCGCCGTCTTCTTCGACTCCGGCGACTGCTGCTGCTACTAAGCCTCTCACCGGCCTCCGTGTGCCGC
GCGGTGAGCTCCTCTACCTCCTACCCTTCTCCGTTTGCTCTCGCGCGAACCTTAGTTAGCTCTCACGACGAGGCCGAACG
CGTCGCCGCGGAGCTCGCCGCCGACGCGTCTCCGGTGACAGTTTGGTCACGGGCCCGTACCCATTAGACTCGCCGCACCA
CGTAGTTACTCCCCAGCCTCTCCGTTTGCTCGATAGCACGCCGTAGCTCCGTTTTCGTCGAGCACCCGTGCACGCCGCCA
CCTCCGCCGCTCGCCGGCGCCGATTTCGGCCAAGTCCGGCGATGCTACGGCCACCACTGGATGCGGTGCTGCGAGCTCGT
TCGAATGAGACTAGCCCCGCTCCTCCCCGAGCCCTGTACGCGTTTTCCGGCGAGATCCGAGCCGCGCCGCCGCGTTTGGC
GTCGCCGGCGATGAGCCGCCGGCCGCGCTGAGCTGGCACACCTAGGGCCACCCCCTGGGTCGCTGCCAGTGGGTCCTGGT
GGCCCAGTTGACTGGGTTGACCCCAGTCAACTGCTGACTGGGCAGGCCCCAGCCACTGACATGCGGGCCCCGCCGCATAA
TTAAAATAAATAAAATGTTTTTATAAATAAAACTAATTAATTAATCTAAATAGGCACTGACAGGTGGGGCCTACCTGCTA
ATAACCTTGTTTAAGTTAATTATAAAACTCTATTAGTGCCCTGTCAATGACATGTGGGTCCCACTGGACCCACCTGTCTG
GTTTGACTGGTCAGCCGACCTGTTGACCTGCTGACGTTAGCATTACCTCATGCTGACGTCATAATTCATTTTTGCTAAAT
TCAAATAATTTCAGAAATTCAAATAATCTTTGAAAATTCATATCTTTTAAACTGTAACTCGGATGAAAATGTTTTCTACA
TGAAAGTTGCTCAGAACGACGAGACGAATCCGAATACGCAGTCCGTTCGTCCACCACACCTCCCTAACCTATCGAACTAG
CAACTTTCCCCCTCCGGTCCGTCTGTCCGAAAACGCGAAACTACTGTCGCGTTAGGACACACCTCGCACTGCTCATTGTC
ATGTCACACATCGTCATGTTTATGTTTGCATTATATTTACTGTTTCTTCCCCCTCTTCTCTCCGGTAGACTACGAGACCG
ACCCTGCTGCTGCCCTTTCGACTACGGAGTTGACGACCCCTCCTACTTGCCAGAGCAACCAGGCAAGCCCCCCCCCCTTG
ATCACCAGATATCGCCTATTCTTCTCTATACTGCTTGCATTAGAGTAGTGTAGCATGTTACTGCTTTTCGATATCCTATC
CTGATGCATAGCCTATCCTTGCTACTACTGTTGATACCTTTATCTGCAATCCTACATGCTTAGTATAGGATGCTAGTTTT
CCATCAGTGGCCCTACATTCTTGTCCGTCTGCTGTGCTATACTATCGGGCCGTGATCACCTGGGCGGTGATCACGGGTAT
ATACTTATATACTATATACATGACACATGTGATGACTAAAGTCGGGTCGGCTCGTAGGAGTACCCGCGAGTGGATCTTTG
TGGCGGAGCGACAGGGCAGGTTGAGACCGCCTAGGTGAGAGGTGGGCCTGGCACTGGTCGGCGTTCGCGGATACTTAACA
CGCTTAACGAGATCTTGGTATTTGATCTGAGTCTGGCCATTTGGTCTATACGCACTAGCCATCTACGCGGGAGTAGTTAT
GGGTATCCCGGCGTCGTGGTATCAGCCGAAGCCTTCGTGACGTCAGCGACTGAGTGGCGCGCACCGTGTTGGGCCGCTTT
GACGTAACCGCCGTGATCGTGTGGGTTGCTAGGTCTGCTCGCGGCCGCGTTCGCAACGTGCAGGTGTGCATAGGGCGATG
GGCCCAGACCCCTGCGCGCTTAGGATTAGACCGGCGTGCTGACCGCTCTGTTGTGCTTAGGTAGGGCTGCGACGCGTTGA
TCTTACGAGGCCGGGCATGACCCAGAAAAGTGTGTCCGGCCAAATGGGATCGAGCGTGTTGGGTTATGTGGTGCACCCCT
GCAGGGAAGTTTATCTATTCGAATAGCCGTGTCCCTCGGTAAAAGGACGACCCGGAGTTGTACCTTGACCTTATGACAAC
TAGAACTGGATACTGAATAAAATACACCCTTCCAAGTGCCAGATACAACCCGGTGATCGCTCTCTAACAGGGCGACGAGG
AGGGGATCGCCGGGTAGGATTATGCTATGCGATGCTACTTGGAGGACTTCACTCTACTCTCTTCTACATGCTGCAAGATG
GAGATGACCAGAAGCGTAGTCTGCGACAGGACTAGCTATCCCCCTTTTTTTTTAATTCTGGCATTCTGCAGTTCAGTCCA
CTGATATGCCCCTTTACACATATACCCATGCATATGTAGTGTAGCTCCTTGCTTGCGAGTACTTTGGATGAGTACCCACG
GTTGCTTCTCTCCCTCTTTTCCCCCTTTTCCTTTCTATCTGGTTGTCGCAATCAGATGTTGGGGTCCAGGAGCCAGACGC
CACCGTCGACGACGACACCTACGACACTGGAGGTGCCTACTACTACGTGCAGCCCGCTGACGACGACCAGGAGTAGTTAG
GAGGATCCCAGGCAGGAGGCCTGCGCCTCGTTCGATCTGTATCCCAGTTTGTGCTAGCCTTCTTAAGGCAAACTTGTTTA
ACTTATGTCTGTACTCAGATATTGTTACTTCTGCTGACTCGTCTATGATCGAGCACTTGTATTCGAGCCCTCGAGGCCCC
TGGCTTGTATTATGATGCTTGTATGACTTATTTATGTTTTAGAGTTGTGTTGTGATATCTTCCCGTGAGTCCCTGATCTT
GATCGTACACATTTGCGTGCATGATTAGTGTACGGTCAAATCGGGGGCGTCACACTAGTTTCATGGCCTCTATTCCGGAC
ATGCACTCATCAGATTCATTCAATTATTTTAGGCAGTATTTGTATGAGATGTCTGGAGAACATTGAAGACAATATTGGTA
TAATGTGAAACAGTTTGGTATATTTCCTCTTCCAAGCCAATACACATATGGGAGCACTTATGCCTCAGGTGCCTGATTTG
TGTGT--------GTGTGTGTGTCACT------------------TTCATTTTTACCATGAGATTCTAATCCAATGGCCG
GTTTTC----------------GCCTAAAAATAGAATACGGCTCGGTCACTTTTTTGGGGTTCTTT-------------G
CCAAGTGCTTGTTGACTAGTTGCGAGCTTTCGGCCTGTAGCA---------------CCCATTTCTAATTAAAATGTTTG
ATCAAATTAAGATGGTAAATGCATACACAAATACTATCTGGGACTTATGG------------------------------
CCCCCTCCCCCGTCGTTCCATACTAAATGGGTCAGCCCATCCGACGCATGAGAGGGAAGCTGGTCCCCGGTTTCTAGAAC
CCCCCATAAGTTTCCTG---------------------------------------------------------------
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>chr3D_684
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------------------------------------------------CAGCGTGGGCTGGGACAGAAGCTCGCTCGTAC
AAGCACT---GTACAGGGACGAC-TCCATTGCGTATACG----TTGAT---CGTCCGTGAATCCTACTCGTTGATCGTCC
GACAATCGTCTCCTACTCCCGTTGCGCAACTTTCTTCCCCATATATGCCACCGACCCAAACGCCCTCTCCAAG-AACCAA
AGAACCACAGGAGCTAACCTCCCTCTTCCCCGATCGGAACTAA--CGCCGGTCACACTAAAAGCCTAAGTCAACGACCAG
CCGGCCGGGAACTCGCCG-TAGTGCCTTGTTTTGGTAGCGTGGAGGGTGGGGTACTTCTGGCATGGAACCACGTCAGCTT
GGGATGGAGGAGTACCGCGCTACCACCGTGGCCGAGGTGCTAAAGCAGGTGGAAACGCCATCCGACGGTGAAGGATGCCC
TATATGCTTGGGTCAGGAGGAGGCCGCGGCGACCGCGTGGAAGGAGACGGTGTGCGGACACAGCTTTCACGGACGGTGCG
TGAAAAGGTGGCTCGAGACGAAGGGAACTTGCCCCATGTGTCGGCATCAGCTTCTAGTACCAC-----------------
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>SNPs
SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------------------
--------------------------S-SSSSSS-SS-SSSSSSSSSS--------------------------------
----S----S-----------------S------------------------------------------S---------
-------------------------S--------------------------------S------------------S--
---------------------------S--S-------------------------------------------------
-----------------S-----------------------S--------------------------------------
-S---------------------------S--------------------------------S----S------------
------------------S-------------S------------------------------------------SS---
------S------------------------S---------------------------------S--------------
---S-------S--------------S-----------------------------------------------------
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-------------------------------------------------------------S------------------
--------------------------------S-----S-------S------------------------------S--
--------S-----------------------------------------------------------------------
-----SSSSSSSS---S--S----S---S---------------S-----------------------------------
---------S---S----------S-------------------------------------------------------
------S----------------------------S------------S-------------------------S-----
----------------------------S----------------------------------S-----------SSSSS
------S----------------------------------------------------S-------S------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_791
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---------------------------------------------------CGTCCCTGAATCCTACTCGC---------
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>reverse_6016
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---------------CCCGACCTTTGATTGAGGCT---------------------------------------------
-------------------
