>input_sequence_82591
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----------------ATGGCTTTAAGAAACACCGCTGTATTCCTCGTCAGACTGCTGCTCTCGTGCGTCGCCATGAGCG
GCGCGGCAAGAATTCTGGAGGAGGAGACAACTCCTTCCAAAGGCGAGGAGCACCTGCCCGAGCTGCCAACGCTGCCCAAG
GTCGGGCTGCCGCCATTCCCGGAGGTGCACCCGCCACCTAAGCCCGAGTTGCTCAAGGTAGAGCTGCTCGCGTTCCCTGA
GGTGCACCTGCCACCCAAGCCCGAGCTGCCAACATTTCCGGAGGTGCACCTTCCAGCCAAGCCGGAGCTGCTGCCACCGA
AGCCAGAGATGCCCACCATCCCGGAGTTCCACTTCACGGAACCGGAGGCTAAGCCATGA---------------------
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>chr2D_1_TraesCS2D01G186300
TCGTCGTCGTCCCTCCAGCGGCGCAAGGATGCTGG-GGGCTACGGCAGCCTTGTCCGAC----------AGCTCCGCCTC
CTATTGCGCGGTGCGGAGGGCCGCCTTGGCCACTGC---------CGACGG-G-CCGGCGGGGCCCTGGCGGTTACCTTG
CCCCTGCCGGCGTTGGCGGACCAGCCGCTAAGCGACCA---CTCGCCGATCTTGGCGAGCTCGCCGTCAAGGTGGCGGCG
GCGCTTGGCGGTCGTCTACGCGGTGATGACGGAGCGGTCGAGCGCCCACGCGGCTGCAAGGTCGGGGTTGTTGCGGGCCC
ATTCCGGTGCGACATCGCTCTTGGCGAACGCGGAGCGGCGATCGGCATTGCGCCGGTCGTA------------CCTCG--
----------CCGCGCGCTCCGCCTCGGACACGACGGCCCTCGAGCCTGAGGCACGGCCATATCCGCCTCCTTTGAGGTA
GTGGAGGATGCGGTCATGCACCGTCGCGATCGCGGGCGACGA----CTCCTTT---ATCAGGCGGCGATGGCGTCGTGGT
GGCGAGGACGGCCGGTCAATCTGCGTGTAGCGGCTGTGCGGCGGGGGCGACGGCGGCTCATCCTTCACGCGGCGGACGAG
CTGGGAGAATTCATCAAATATGAGCAATGTCTGAGCCCTTGAACCGGCAGGTTTCCAAGAATTTTCTACCACCTATCTCC
CATTAATACCTTCATGCCCGTGAAGGTTGTTCATATCACTGCTAGGAATTTCAGAACGGTGCCCGAATTTCTGAACGGTA
ACCAAACCATACTTTATTCACAAAGTATTTGGGCCTAACAATGCCAAACTCAAAGGACAATGCATGTGTCCTAAATATTG
CGTGCCAGAGTTTGGATTTCGTGGTTTATCGGGCAAAAACTTCCAATTGAAATTATTGATAAGGATGAATCATGCATGAG
CGTGCTTTTCAAATATTTTAAGTTAAAAGGAAAAGTGTGCAATCAACACTATTATATGTATACATCAATGGATTTGAAAC
GAGGTCGTCCATCAAAATGGCTTTAAGAAACACCGCTGTATTCCTCGTCAGACTGCTGCTCTCGTGCGTCGCCATGAGCG
GCGCGGCAAGAATTCTGGAGGAGGAGACAACTCCTTCCAAAGGCGAGGAGCACCTGCCCGAGCTGCCAACGCTGCCCAAG
GTCGGGCTGCCGCCATTCCCGGAGGTGCACCCGCCACCTAAGCCCGAGTTGCTCAAGGTAGAGCTGCTCGCGTTCCCTGA
GGTGCACCTGCCACCCAAGCCCGAGCTGCCAACATTTCCGGAGGTGCACCTTCCAGCCAAGCCGGAGCTGCTGCCACCGA
AGCCAGAGATGCCCACCATCCCGGAGTTCCACTTCACGGAACCGGAGGCTAAGCCATGAAGACCGTCTTCACTTGTCTTC
TCTTTGCTCGTGCTCCTATCATGGGATTGTTTAGTGTGGATTTTCCATGAGTCATTTGTGTGATATCAAGCGCTTATCTA
TTAATTGAGCAACCATCTTCTTGGAAAAGACAGGTCCACCCCTTTCTGGGATTTGCACTGGGCAGAGGGTCTGCGCCCAA
TTGACCGATGGCCCGAGCTGTTGCAACACTGTACCAAGCGCCGCCTATCGCTGCGTGAGGCTATCACAGACAATCTTTGG
ATGCGCCTGGTCAAGCCCAACCCCTCTGCACTGGTGCTCAGACAACTTTGCTGCTTATCGGAGATGGCGGCGGCTATAAG
CTTCAGCGACTCGGTGGTAGACACCGTGACTTGGCGTTGGACGGCTGATGGAAACTACTCTGCCAAGTCGGCGTACCTAT
GCCAGTTTGAAGGTGCTCTGCAATCCGACGACAAGGCGCTCATCTGGTCCGCCAAAGCGGCACCTCGAGCCAAGACGTTC
CTCTGGCTTGCTGCTCACGGACGATGTCTAACGGCTGACAATCTGGCTATCCGGGGCATACCATATAACCCGGTCTGCTC
ACTCTGCTGCGCTGCACCGGAGACTGCTAACCATCTGCTCGTGGACTGCAGCTTCACCAAACAGTTGTGGACGGTGGCTA
TCAATAAGCTAGCCGGCCCATTCCTAAACCTGACGACAGCGGTGAGCTCGAGCGTTCAATGCTTATCTCTGAAGACCAAC
TGGATGACACAGCTCCAGTCGCTCCCGGTGGATGAGAAAAAAGTTTGGAAGGCAGCCATCTGCTTGATCTCCTGGATGAT
ATGGAAAGAACGCAACAACCGTGTTTTCAGTGGCGACAGGTGCTCCGTTCCACAACTCATGGGACGTATC----------
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-----------------ATGGATGAAGCGCGATGCTAGTCGGCTGCCGGGCTTACCCTGGTTGACAGATTTTCTGAGCCT
CCTTGAATGCTGCTCGC--TGTATTTTTCTGGATGCCAGCTTCAGGCT
>chr7B_3
--GTCGTCGTCCCTCCAGCGGCGCAAGGATGTCAAAGGGCCACGGCAGCCTTGTCCGGTGGCTGCCTATCGCTCCGCCTT
CTGTTGCCTGGTGCGGAGGGCCGCCTTGGCCACTGC---------CGACGG-GGCCGGCGGAGCTCTGGCTGCGACCTTG
CTCTTGTCGGTCTTGGCGAAGCAGTCGCTAAGCGACTATTGCTCGCCGATCTTGGCGAGCTCGCCGTCAAGGCGGCGGC-
--GCCTGGCTGCCGTCTCCGCGGTGGTGACGGAGTGGTAGAGTGTCCACGCGGCGGCAAGGTCAGGGTCGTTGCGGACCC
ATTTCGGGGCCACATCTATCTTGGCAAACGCGGAGCGGCGACCGGCATTGCGCCGATCGTA------------CCTCGCC
CACTGACTCGCCGCACGCTCCGCCTCGGATACCATGGCACGAGAGTCGGCAGAACTATCGTAACCGCCTCCTCCGAGGTA
GTGGAGGATGCTGCCACGTGCCTTCGCGGTCTCGTGCGGCAA----CTCCTTT---TTCTAGCGGCGGTGGCG-------
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>chr7D_3
--GTCGTCATCTCTCCAGCAGTGCAAGGATGTCGAAGGGCCGCGGTAG------CCTAC----------CGCTCTGCCTT
TTGTTGTGTGGTGCGGAGGGCCGCCTTGGCCACTGC---------TGGCGG-GGCCG-CGGAGCTCTGGCCGCGGCCTTG
CCCTTGTCGGTCTTGGCGAAGCAGTCGCTAAGCGACTATTGCTCGCCGATCTTGGCGAGCTCGCCGTCAAGGCGGGGGCG
GTGCCTGGTTGCCGTCTCCGCGGTGGTGACGGAGTGGTAGAGCGTCCACGCGGCAGCGAGGTCAGGGTCATTGCAGACCC
ATTTCGGGGCCACGTCTATCTTGGGGAACGCGAAGCGGCGACCGGCATTGCGCCGATCATA------------CCTTGCC
TACTGCCTTCCCGCACGCTCCGCCTCGGATACCATGACACGAGAGTCGGCGGCACTACCGTAACCGCCGCCTCCGAGGTA
GTGGAGGA-GCAGCCACGTGCCTTTGCGGTCGCGGGTGGCA-GCTCCTCCTTT---ATCTAGCGGCGGTGGCG-------
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>chr7D_60
----------------------------------------------------------------------GCTCCGCCTC
ATGTTCCGCGGTGCGGAGGGCCGCCTTGGCCACTTC---------CTACGGTG-CCGGCGCAGCCCTGGCGGCAGCCTTG
CCCCTACCGGAGTTGGTGGAGCAGCCCCTAAGCGATCACTCCTCACCGATCTTGGCGAGCTCGCCATCAAGGCGGCGGCG
GCGCCTAGTAGCTGTCTCCAAGGTGATGACGGAGCGGTCGAGCGCCCACGGGCCCGCGAGGTCAGGTTCGCTACGGACCC
ATTTTGGCGCCACGTCCGTCTTGGCGAAAGCGGAGCGACGACCAACATTGTGTCGGTCGTACCTCGCCTGCTGCCTCG--
----------CCGTATGCTCTTCCTCGGATAGCACGGCCAAAGAGCCAGAGGCACCGCCATAACCGCCTCCTCCAAGGTA
GTGGAGGATGTGGCCACGAGCCTTCGCGATTGCA-GTGGCA-GCTCCTCCTTT---ATCAGGTGGCGGTGTCATCATGGT
GGCGA-GAGGGGCCGTTAATCTGCGCGTAGCGAGTGTGCGGCGGGGTTGATGCCGGCTCGTCCTTCACGC----------
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>chr2D_61
-----------------------------------------------------------------------CTCCGTCTC
TTGTTGCGCGGTGCGGAGGACCGCCTTGGCCACTGC---------CGGCGG----------AGCCCTGTGGGCAGCCTTG
CCCCTGTCGGCGTTGGCAGAGCAGTCGCTAAGCGACCACTCCTCGCCGATCTTCGCGAGCTTGCTGTCAAGGCGGCAGCG
GGGCCTGGTGGCCGTCTCCGCGGTGGTGACGGAGCAGTCAATCGCCCACGCTGCGGTGAGGTCAGGGTTGTTGCAGACCC
ATTTCGGCGCTGCATCGCTTCTAATGAACGTGAAGCGGCGACCGGCATCGTGCTGACCGTA------------CCTCG--
----------CCGCACGCTCCGCCTCGGACATGATGGCCCTCAAGCCCGAAGCACCGCCATAACTGCCTCCTCCGAGGTA
GTGGAGGATGCGGCCATGCGCCTTCGCAATCACA-GGCAACGGCTCCTCCTTT---ATCGGGTGGCGGTGGCATCGTGGT
GGCGATGACAACCCGTCAATCCGCGTGTAGCGGCTGTGCGGCGGGGGCGACACCGGCTCATCCTTCACTCAACGGAGGCA
CTGGGGGAAT----------------------------------------------------------------------
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>chr4D_62
------------------------------------------------------------------------TCCGCCTG
CTGTTGCGCGGTGTGCAGGGCCACCTTGGCCATTGCCGCGGACATCGGCGG----------AGCCCTGAGGGCGACCTTG
CCCCTGCAGGCGCTGGCGGAGCAGTCGCTAATCGACCACTTCTCGCCAACCTTGGCGAGCTCGCTGTCGACGCGGCGGCG
GT-CCTGGCGGCCGTCTTCGCGCTGGTGACGGAGCGGTCGAGCGCCCACGCGGCAGTGAAGTCCGAGTCGTTGCAGACAC
ATTCCGGCGCCATGTCGCTCTTAGAGAACCCGGAGCGGCGACCAGCATTGCACTGGTCGTA------------CCATGC-
-------TCGCTGTGCGCTCCTCCTCGGATACGATGGCCCACGATCCAGAGGCATTGCCGTAACCACCTCCTTCGAGGTA
GTGGAAGATGCGGCCATGCGCCTTCTTGACCGCGGGCGGCA-GCTCCTCCTTCTTGACCGGCTGGCGGTTATGATGTGGC
GGCAGAGACGGCCTGTCAATGTGGGCGTGTCAGCTG-GCGCTGGGGGCAACACCGGCTCGTCTTTGACCAGGCGGAGGTG
CTGG----------------------------------------------------------------------------
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>chr1A_1501
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------------------------------------CACCCCTTTCTGGGACTCGCATTGGGCACAGGGTATGCGCCCAA
TTGACAGATGGCCCGAGCTGCTGCAACACTCTACCAAGCGCTGCCTATCGCAGTGTGAGGCTATCACAGACAATCGTTGG
ATGCGCCTCGTCAAGCCCAACCCCTCTGCACTGGTGCTCAGGCGACTTTGCTGCTTATCGGAGATGGCTGCGGCTATAAG
CTTCAGCGACTCAGTGGTAGACACCGTGACATGGCGTTGGATGGCTGATGGAAACTACATTGCCAAGTCGGCGTACCTAT
GCCAGTTTGAAGGTGCTCTGCAATCTGACGCCAAGGCGCTCATCTGGTCTGCCAGAGCGGCACCTCGAGCCAAGTTGTTC
CTCTGGCTTGCTGCTCGCGGACGATGTCTAACGGCTGACAATCTGGCTATCCGGGGCATACCACATAACTTGGTCTGCTC
ACTCTGCTGCGCTGCACCGGAGACCGCCAACCATCTGCTTGTCAACTACAGATTCACCAAACAGTTGTTAACGGTGCCTA
TCAATAAGCTAGCCGGCCCATTCCTAAACCTGACGACAGCGGTGAGCTTGAGCGATCAATGCTTATCTCTGAAGACCAAC
TGGATGACACGGCTCCAGTCACTCCCGGTGGATGAGAAAAAAGTTTGGAAGGCAGCCATCTGCTTGATCTTGTGGTTGAT
ATGGAAAGAACGCAACAACCGTGTATTCAGTGGCGACAGGTGCTCCATTCCACAACTCATGGG-----------------
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---------------------------------------------CCGGGCTTACCCTGGTTGACAGATTTTTTGAGCCT
CCTTGAGTGTTGCTGGT--TGTATTTTTCTGGATGCCAGCTCCAGGCT
>chr6B_1646
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---------------------CCCTCTGCACTGGTGCTCAGGCAACTTTGCTGCTTATCGGAGATGGCGGCGGCTATAAG
CTTCAGCGACCCGGTGGTAGACACCGTGACTTGGCGTTGGATAGCTGATGGAAACTACACTGCCAAGTCGGCGTACCTAT
GCCAGTTTGAAGGTGCTCTGCAATCCGACGACAAGGCGCTCATCTGGTCCGCCAAAGCGGCACCTCGAGCCAAGACGTTC
CTCTGGCTTGCTGCTCGCGGACGATGTCTAACGGCTGACAATCTGGCTATCCGGGGCATACCACATAACCCGGTCTGCTC
ACTCTGCTGCGCTGCACCAGAGACTGCCAACCATCTGCTCGTGGACTGCAGCTTCACCAAACAATTGTGGACGGTGGCTA
TCAATAAGCTAGCAGCCC--------AACCTGACGACAGCGGTGAGCTCGAGCGATCAATGCTTATCTCTGAAGACCAAC
TGGATGACACAGCTCCAGTCGCTCCTGATGGATGAGAAAAAAGTTTGGAAGGCAGCCATCTGCTTGGTCTCCTGGATGAT
ATGGAAAGAACGCAACAACCGTGTTTTCACTGGCGACAGGTGCTGCGTTCCACAACTCATGGGACATATTATGGATGAAG
CGCGATGCTGCTCGGCTGCCGGGCTTACCCTGGTTGACAGATTTTTTGAGCCTCCTTGAGTGCTGCTGGCTGTGTTTTTT
TCTGGATGCCAGCTCCAGGCTTTTCACCTAGTCTCTAACTCTAAAGTCTTTGTATTTGTTCCTCTCCTAATTAATCAATG
AAATACGGCTCTAGGGCCGTCTTTTCGTAAAAAAAAAAAACTGTACCCTAAACTTTGATTTCATATTTGCTTTATGTGTT
ATGGAAAAAAGGCACAGTTGAATCATGCTAAATTTTCAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
CAAAAACTACGGTAAGTATGGATGAAGCGCGATGCTGGTCGGCTGCCGGGCTTACCCTGGTTGACAGATTTTTTGAGCCT
CCTTGAGTGCTGCTGGCTGTGTTTTTTTCTGGATGCCAGCTCCAGGCT
>SNPs
SS-----------------------------SS-S-----S----------------------------S----------
--S----------------------------------------------------------S----------SS------
--------------------S---------------------------------------------------S-------
----S------S-----S------------------------------------S--------S------------S---
-------S--S------------------------------S--------------------------------------
-----------------------------------------------S-------S------S----------S------
-------------S-----S--S-----------------S--------------------------S------------
-----S-------S--------------------------------------S-----------------------S-S-
-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-S---S------S-----S---------
-----S--------------S---------S----------S---------S-S---------------------S----
--------S--------------------------------S--------------------------------------
-----------------------------------------S----------------S---------------------
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----------------S----------------------------------------------S----------------
---------------------------S----------------------------------------------------
------------------------------------------------------S-------------------------
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------------------------------------S-----------------------------------S-------
------S-------S--------------------------S------
>forward_686
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--------------------------ATGTCTGAGCCCTTGAACCG----------------------------------
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>reverse_1549
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----------------------------GACAGGTCCACCCCTTTCTG--------------------------------
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