>input_sequence_82588
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----------------------------------------------------------------ATGCAGACGGCAAAGG
TGAAGATGAAGGACGCGGTGAGCTCGGCCAAGGAGAAGGCGAAGGAGGGCACGGCCAAGGCGCAGGGCAAGACCGGCAAG
GCCACGGCGACCACGCACGGCGAGAAGGAGATGGCCAAGGAGGAGACGCGCGCCAACAAGTCCCAGGCCAAGGCCGAGAT
GCACCAGGAGAAGGCGGAGCACCGCGCCGAGGCCGCGGCCGGGCGCCACGGCGCCACGCACGTGCCCCTCACCGGGCCGC
ACGGCCACCACCGCCCCGTGGGTGCAGGTGCAGGTGCAGCGCCTGCCGCCGCCGACCCTGCGTACCCGGGCACCGGCGCG
TACCCGACCACGGACAAGTACGTCTAG-----------------------------------------------------
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>chr2B_1_TraesCS2B01G471600
TTTTTGTTTTGTCTGTTTGAGAAACATATGTGCAAACAAAGAAAACCGGGGATGTACCTGTAAAGGAAACATAACTGAAA
CAAAAGCGAAGCGGCCGGCCATACGTTGTGACCTGACCCAAATAAATATACATGGAGTCCGAACTAGCTACGGGCTGCCG
GGTTCCGGCTAGCTTGATTCTCCCAGCTAAACACATGAGTACATGTTAAGCAGGCTTGTGGATCCGGCGACGACTACATG
GCTGCCTTTTGCAAAAATGATGAAAGCACACAATTTTATTCATCTGGGGATAATTGATGTGTACCACAAATCAAATCATT
GCTTATGTTTTATGCTGTGTTTAGGCTTAAATCATCACTTGTTTATTGGGATAGAAGAGTGAGGTGATTTTTTCTACTGT
TGCAACGCACAAACATATTTAGGTGGCACTTTCGGTTGTTATTATGCCATGATGACGGTCGTTTTGGTGGACAATGGGCA
CAATGATTTCTCTCCGTTGAAACGCACGGGCATATGTGCTAGTTGTTATAATTATTTGTATATATCAAAATTCTGGAATA
AACTGCACCTATT----TTCCCAAAAGCCATACTTC--GCAGGCCGATGCGATTAATG----------------------
---------------------------------GCACAGCTACAGTTACTTGATGTTGATCCAGATGCCGTTC---ACGT
GCAC-----TGATCAGCAGCATTAGAACACCGCCGTCATCCAACGTAGGGGCACGCGGCACCTGAGCAGAGCGTCACACA
GCC-------TACGCG-CCGCCTGCCAGAACCTTGGGCGCCACCTCACGGCGCTACGTGT-AACTCCGGCTGGCTCTGGA
ACCACCGCATTCGCGCCACCTACCACCCCACGTCTCGCTCCCGACAGAACCCA------------CGCCATTCCAACCCA
ACCCATCCT-CGCCTACAAATACGCCACACGACCACCACGGCATCTAA-CATTCCCAGACACCCCAAGCACCCACACAAA
GAACG--------CATACACACAGCAAGCAGAAGAAGCCTTTTTCCG---AG-GAGCGGCGACGATGCAGACGGCAAAGG
TGAAGATGAAGGACGCGGTGAGCTCGGCCAAGGAGAAGGCGAAGGAGGGCACGGCCAAGGCGCAGGGCAAGACCGGCAAG
GCCACGGCGACCACGCACGGCGAGAAGGAGATGGCCAAGGAGGAGACGCGCGCCAACAAGTCCCAGGCCAAGGCCGAGAT
GCACCAGGAGAAGGCGGAGCACCGCGCCGAGGCCGCGGCCGGGCGCCACGGCGCCACGCACGTGCCCCTCACCGGGCCGC
ACGGCCACCACCGCCCCGTGGGTGCAGGTGCAGGTGCAGCGCCTGCCGCCGCCGACCCTGCGTACCCGGGCACCGGCGCG
TACCCGACCACGGACAAGTACGTCTAGGTGTGTGATGACCG--GGATCAGGAGCTGGCACCTGTTTTCTT---TGTGTGG
CTAGTGATCTTGCCCGTCTGTCCTAGTTGGCTCGCGCGTGTATGCTGCGCGCACATGCGTGTGCCCGAATAAAATGTATC
GGTCAGTTGTAAAATGCACCTTTGATGTACTAGTAGTAATTTGTGACTCGAGTGCTCTTGCCTGGTTTCATCACAAAAGT
TTGATTCGTAATTTGTAACTTGAGTACTTGTTTATTCGCTTGGCGTGCGTGCGAATCAGATGCTCAGAAATGGACGTGAA
CAAACTTGATGTGGAGCTGGATAGCAAAGCAGTGGTGCGTATGAATGCCGGCGCTCCTCTAGC-----------------
----------------CAGCACAACGGCCACCGGAGCCGAGTGAAAATGGGGCGATCTGAACCCACCACTCACCGGCGGT
TCGAGGTCAGGCGACCCTATCTCCTTCCTCTTCTTCTCGACCCCCTACTAATTTACCTCTTCTCTTTGGAAAATTCGAAT
CTAGTTTGGGAAACCCTAGTTTGATTTCCCCCAAATATTTAGATTTTTTCTTGAAACTATGATGATTTTTATAACAAATT
CGGAAACTATACATCCTAATGAAGAAAAATCAAAAGTGTCACCCGTCGGCCTCCCGATGGTCGAAGAGGGACTTTTCGGC
CGACCCTAGTCCAAAAAGGACTTTTCGTTTTCGGCCAACA----------------------------------------
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------------------------------------------------------GTTGCTCTACTTTCTAAAAAATTCAT
ATCAAATAGG----------------------------------------------------------------------
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----------------------------------------------------------------ATTTTTAGTATTTTAA
TTTGATTCTTTTTGCATTAGATTAGAAATTTTATGAAGTTTCTGTAGATATCAAGTTTGACTAGATTTAAAAGTTTGAAT
TTAAATTTTCATGAATTTTCTCAAATCACTAGATTGCCTATAATTTGAGCTAGGTG------------------------
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--------TATTCTTTTTAGATGATTCTTTTTGCCACTGGTTATTTGTGAATTTGTTTATCAGTAGTAATTAATTGGCGA
ATTTTATAATTATTAAAAAATAGGTTTTTATGAAAACAGTTCTGT-----------------------------------
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>chr2D_523
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------------------------------------------TTGTTATAATTATTTGTATATATCAAAAT-CTGGAATA
AACTGTACCTATATATATTCCCAAAGGCCGTACTGATTGCAGGCCGATGCGATTAATGGGCGCTACATGCAGCGTATGGC
CTCCAATAGCAATCGCGCACCGGAACCAGACCTGCACAGCCACACTTACTTGATGTTGATCCAGATGCCGTTC---ACGT
GCAC-----TGATCAGCAGCATGAGCACACCGCCGTCACCCACGGCAGGGGCACGCGGCTCGTTCGAAGAGCCCCACACA
GCACACTGCACACGCGCCCGCCTGCCCCAACCTTGGGCGCCACCTCACGCCGCTACGTGTAAACTCCGGCTTGCTCTGGA
ACCACCGCATGCGCGCCACCTACCACCCCACGTCTCGCTTCCGGCAGAACCCAAAGCGCCAGCGCCGCCATTCCAACCCA
ACCCATCCT-CGCCTACAAATACACCACACGACCGCCACGACATCTAAACATTCCCAGACA-CCCAAGCACCCACACAAA
GAACACAACAGCACATACACACAGCAAGCAGAAGAAGCTTTTTTTTTTCAAG-GAGCGGCGAGGATGCAGACGGCCAAGG
TGAAGGTGAAGGACGCGGTGAGCTCGGCCAAGGAGAAGGCGAAGGAGGGCACGGCCAAGGCGCAGGGCAAGACGGGCAAG
GCCACGGCCACCACGCACGGCGAGAAGGAGATGGCCAAGGAGGAGACGCGCGCCAACAAGGCCCAGGCCAAGGCCGAGAT
GCACCAGGAGAAGGCCGAGCACCGCGCCGAGGCCGCGGCCGGGCGCCACGGCGCCACGCACGTGCCCCTCACCGGGCCGC
ATGGCCACCACCGTCCCGTCGGCGCGGCT------------CCTGCCGCCGCCGACCCTGCGTACCCGGGCACCGGCGCG
TACCCGACCACGGACAAGTACGTGTAGACGTGAGATGATCGAGGGA-CAGGAGCTGGCAGCTAGTGTTTTTTATGTGTGG
CTAGTTATCCTGCCCGTGTGTCGTAGGTGGCGCGCGCGTGTATGCTGTGCCCACATGCGTGTGCCCGAATAAAATGTATC
GGTCAGTTGTAAAATGCACCTTTGATGTACTAGT---AATTTGTGACTTGAGCGCTCTTGCCTGTTTTCATCACAAAA-T
TTGTGACTTC-------------GTACTTACTTATTCGCTTGGTGTGCGTGCAAATCAGATGCTCAGAAATGGACGTGAA
CAAACTTGATGTGGAGCTGGATAGCAACGCAGTGGTGCGTATGCATGCCGGCCCTCTAGCCAAAGAGGGCGTCGCTCAGC
TCATTCAGTCTCCACTCAGCACAACGGCCACCGGAG---------AATGGGGCGATCTCAACCCACCAGTCACCGGCGGT
TCGAGGTCAGGCGACCCTATCTCCTTCCTCTTCTTCTCGATCCCCTACTAATTTACCTCTTCTCTTTTCTATTTTCTTGC
--------GGGAAACCCAACTTGATTTGCCCCAAATATTTACGTGCAGATAGTGGAGAGTTCCCCAAAATATTTACCTGC
AGATAGTAGAGAGAGAGAGAGAGAGAGACTTTCTTAGGGTAGGGCGACGAATACTT------------------------
----CCAATTCCGGAAAGGTCATTGCTTTTCTGGCTTCTTCTCCACACCTTTCTTTAACAACTCAGTTAAAAGGCCTGCT
GATAGCTCCATACCCCGGTACAAACTATTGAACTCGGAGTCGGTCGTAGTTGTGCTGCTACGATTGGCATGGCTGGATGC
GGCAAACAGCAATGAGAAATGTTGTGACACAACGATAAGGCGTGACTGGATATTGCAAGCAATGATGCATATGCTACAAC
TTCTCTAACTAAAGTACTACAACCGTTAATGGAGGATGCGTCGAACCGGTGAGATGAAGGATGCATCAAACCCGTTAGAT
GACGGGATACAATCAATAACCGATGAGATGACGTGATACAATTAATGATGGACGACATGCTACAACCAACAAGTCGGTTG
TTGTAACCGGTAGAAAGAAATATTGCAAACGATGAATAAAATGCTACAAGGTCGATTAAGCCTTAGTAAATCTCAATCGA
CTGAGTTTTAGGAAGCCCGAACTATTAAAGTCACTTGCGGAAAATACTACTCGCCGTACAAGCTGAGACAGGGACGATAC
GTACGATGACATGTAATTTCTTATTGTTTTGCGCAGTTTTATCTAATTTCTTATTGTTTTGCGCAGTTTCTCAGTTTTGA
GCTGGATTGTTGCATTTCTCAGTCGTAGCTGCTACTGAATATTGAATGTTAAGGATATCGCTTATCATTAGCACCTTGGT
CGGCTGAGGATTAGAGATTAATAAAAATTATCGCTTATCGTTAGCACCTTGGTCGGCTGAGGATTAGAGATTAATAAAAA
ATTAGTTGATTAATTGATTTTATCCGTGGGCTATTAATCAGCCATTTTTATTCAATCTCAAGTTCACATAGCTGAAATAT
GCTACATTCAACACAAAATTAATATTGGACACAAGTGTTATGTTGGATTCCTTGCCTTTAAATCCTTGTACAATTACAAA
TAAATAAAACAGAGGTACATATTACATAGCAAGATCCACAAAACCAAATAAACATGTTCTAGGAATAGGCCTGGTTTATC
GTTAGATTCCTGACAAATCGCTTGCCGGAGCGATAAATCAGACCAAATGACAAACGATAATGATATGGCATAATCTTATC
GATAACCATCCCCCCCAGTAGCGATAAATTGCTGAATTGACCGACTTTTGAATAGTGTTGTTGTTGCGACTGTTGTATCA
GGGCCGATCCCATTTCATCAAAGGCTTGTGTTGCCGACCCCGTGTCCAAGGTGCTCGACGACAATAACCTCCTCATTGAG
ATCGTCGTCCGCCTTGGCTTCCCCACCACACTAATCGGCGCCACCCTCGTCTGCAAGCGTTGGTTCCTCCACGCCTCCTA
CCCTGCCTTCCTCTGCCGATTCCGTAAGTCGCACCCTCCTCGCCCCCTCGACTTCTACCTCACTACACCCTAACTCTTCA
CCCTGATGCTGCCTCAGCCCACCAAGCTTGCTGTCGTCGCCCACCGTGTGGCAAGGTACAACTTTTATATGTTTAAAGAC
AGTTTTGGTTCTTGCATACTTCGGCTACAACACACTTCCCTTTATTGCTACTGGCCATGTTTTCTAGGACCTCTACTTGT
CGGCAATAGAATATATATACCGAGCTTCCGGAATGACTCTTGTCTTAGATTTTGGGTCCTCAAGTTTCTTAACAGTTCCG
CACCTACATGGGGTGGAGTATGGCGAGACGAACACCTAGTTATCACCTGATGATGATGATTCCAAAGTTCCAGGAATTTT
CAACTTCACATCTGGCTATGCAATGGGGACACCTGGTTGCTGGTGGATGTCATTTGTTTGCAAGAGATGTATGCTAATTT
GAGGATGTCAGATTACAGTGTTGAGGATAATGATACTGTCTAGATAAACACAGTGGGGGAGAATGTTGGGTTTGCGTTCT
TGTAGATTGGTTGATCCGTACTATACTTGGATATTAAGTTCAGGATCATGCGTAAAGTGTACGATATGAGAATAAATTAT
CATTTTTTGTGTGGTGTTTGTTTGATGATCTAGCCTCGCACATTCCTTGTGCTCAGGATGATCCTTCAAGGTTTACCTTT
TGGCCTTTTGGTTATGCTAGTATAATTTGTATATGCGTGATCGTAACAGAAGTGTAGAGGAGAAACATGTGTGTTCATAA
ACTCATAATAATATGGTTGTTCCACTGGACGATGAGGGTGTCCCCTGTGCATGGGTGCAAGGTTAGCGAGTAGAGACGGA
AATGGGGAAGTCGAGGTGGATAAGAGAAATGAAAGGAGTAGGGTTTGGCTTTTATGTCTCAGATTGTTAACACTTTGGAA
TGCTGCCACATGATAGAACTAATTCTCCATTTCTTTAATTATGTTGGATCAATTTACATTGGATTTCAATTATGTATCAT
TCATAATTATAAGATGTATTTCAATGATGAATCATACATTTTACACTAGCATGCTTGTGGTTATGCATGTTTTCTCTTGA
TTCAACTATTGAATTTACACTGGTCTATTGGGTTTCTTTTGCTTGTAAGCAGGAAAGTTGGGTCGAAATGCGTGAATCAG
AAACTGTGAACACATTACACATGAGATCTTATAATGTGCTATGATGGTTCCTCAGGTGAGGTACATTTATCTTTTTTCTA
TGTGTATATTTTTGCCTTGGTTACTCAATTTATAAGTTGATGCATGATTTATTT-------------------TTTTAGT
TTACAAGTGCATGAATTTGATTCATTTCTAAACTGTATGGTTCTTACATTTCCAAAAATCATGCCTTCATGTTTCTCGAA
CATTTTTAGAGAAATGACAACCTCCATTATCCGGCTTTTATAGGAAGCCAAAGAAAAAACAAAGTTCTTTCATAAACCTG
GCTCACCCCATACTAGAAAACCCAATTAGGACAGTAAGCTCGATCGAAAGAAAAACAACACAAGTCGCACGCAAGGAAGC
TGAAGAACAAAGACAATGTTGCCTCTTTGTGGAATTTTTCTTAATATCCCTTCTTATCCAGTAACCTTTTTTTTTTGCGG
GTCTTCTTATCCAGTAACCTGATAGCTCTATCAGCAGTTTCATTAAACTGAACATCTTCCAGATCGCAAGCAGGCGCGCA
TAGTTCTGAACCATCACTGCCAAACAGAAATCGTCCGAAATCAATGTGCCACCCCCTATTTTCAGAGAAATAATTACAAA
CCAAACTATCAGGATCTGAAATCTTACAGAAGCGGGAAGGATATTTATTTAGTTTTAGAGTAAATTCCATCATCCACCAC
ATGGCAGATTTTTTTTGTTTTTGTTTTATTTTGAGACATGTTTTTGAGTGGTTCCACATGGCAGATCGGCGGTGCGGCGC
GGCCTACGCGGCCGCACAGGCCCAACGTTATCGGGCTGCCGGGCTGCCAGTTTGCCACCTCAAGCCGCGACATGCAGCTC
CCTCTGCTCTGGAATCGCCGCATGCGCGCCACCAGCCACCCCGCAGCTGACGTGCCGCGAGGCGAGAGGACGCCGCTCGC
ATCCGGCAAGAAACCAAACTGCACCGCCGCCGTTCCGAGCAATCAGCGCCTACAAATCCACCACACACAAGAGCTCACAC
AGGCAAGACAGACACCGAAGTATCCACACGACCAGACACCAGCACGCGACACAAGAGGCCTTTGGAGGAGCGATACACTA
CACGTACACGATGCAGACGGCGAAGGTGAAGGACATGGTGAGCTCGGCCAAGGAGAAGGCGCAGGAGGGATCGGCCGAGG
TGCAGGGCAAGGCGGGCAAGGCCGCGGCGACCACGCACGGCGAGAAGGAGATGGCCAAGGAGGAGGAGCGCGCGCGCAAG
GCCCAGGCCGACGCGCAGAAGCACCAGGAGAAGGCCGACGCGGCAGCGGGACGCCACGGCGCGGCCGGGACGCGCGGCCA
CTACGGCCCC
>chr2A_613
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---------------------------------GCACAGCTACACTCACTTGATGTTGATCCAGATGCCGTTCATCACGT
GCACCGGAGTGATCCGCAGCACGAGCACGCCGCCGTCATCCACCCCAGGGGCACGCGGCTCCTTCGAAGAGCGCCACACA
GCA-------CACGCGCCCGCCTGCCCCAACCTTGGGCGCCACCTCACGCTGCTACGTGTAAACTCCGGCTTGCTCTGGA
ACCACCGCATGCGCGCCACCTACCACCCCACGTCTCGCTCCCGACGGAACCCAAAACGCCAGCGCCGCCATCCCAACCCA
ACCCATCCTCCGCCTACAAATACACCACACGACCGCCACGACATCTAA-CATTCCCAGACA-CCCAAGCACCCACACAAA
GAACACA--------TACACAGAGCAAGCGGAAGAAGCTTTTTTCCCGAGGAAGAGCGGCGAGGATGCAGACGGCCAAGG
TGAAGGTGAAGGACGCGGTGAGCTCGGCCAAGGAGAAGGCGAAGGAGGGCACGGCCAAGGCGCAGGGCAAGACGGGCAAG
GCCACGGCGACCACGCACGGCGAGAAGGAGATGGCCAAGGAGGAGACGCGCGCCAACGAGGCCCAGGCCAAGGCCGAGAT
GCACCAGGAGAAGGCCGAGCACCGCGCCGAGGCCGCCGCGGGGCGCCACGGTGCCACGCACGTGCCCCTCACCGGGCCGC
ATGGCCACCACCGCCCTGCGGGC---------------------GCCGCCGCCGACCCTGCGTACACGGGCACCGGCGCG
TACCCGACCACGGACTAGTACGTCTAGACGCCAGATGATCGGGGGATCAGGAGCTGGCAGCTAGTGTTTTTTGTGTGTGG
CTAGTGATCCTGCCCGTGTGTCGTAGTTGGCGCGCGCGTGTATGCTGTGCGAACATGCGTGTGCCCGAATAAAATGTATC
GGTCAGTTGTAAAATGCACCTTTGATGTACTAGT---AATTTGTGAGTCCAGTGCTCTTGCCTGTTTTCATCACAAAA-T
TTGATTCGTAATTTGTGACATGAGTACTTGCTTATTCGCTTGGCGTGCGTGAGAATCAGATGCTCAGAAATGGACGTGAA
CAAACTTGATGTGGAGCTGGATAGCAAAGCAGTGGTGCGTATGAATGCCGGCGCTC------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S--------
-----S------S------------S---S----SS--------------------------------------------
--------------------------------------------S-----------------------------------
----------------------S--S----------------S--S-------------S---SS-S------S------
--S-------S---------------SS---------------------S---------------------S--------
----------S---------------------------------------------------------------------
-----------------------S----------S-----S--------------------S------------------
----S---------------------------------S-------S---------------S------------S----
-----S-------------------------------------------------------------------S------
------------------------------------------------------------S-------------------
---------------S----------------------------------------------------------------
-S--------------------S--S-S-SSSSSSSSSSSS---------------------------------------
---------------------------SS---S-----S--------------------S--SS-S-S------------
---------S-------S----S--------S---------------S--------------------------------
----------------------------------SSS---------------------------S-------------S-
----------------S--S----------S-------------------------------------------------
--------------------------------------------------------SSSSSSS-----------------
------------------------------------SSSSSSSSS-------------S---------S-----------
----------------------------------------S--------------------------SSS-SS---SSSS
SSSSSSSS--S--S--S-SS-------S-------------SS-SSSSSSSSSSS-SSS-SSSSSSSSS---SSSSSSSS
S-SS-SSSSSSSSSSSS-SS--SSS-S-S-SSSSSSS-SS-SSSSSSS-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS--S-S---SS-----S-S--S-S---SS---SSSSS----------------------------------------
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-------------------------------------------------------S-S---S-S-----S--S-S---SS
SS-SS-S-S-----------------------------------------------------------------------
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--------------------------------------------------------------------S-SS-S---SS-
-S--SS-S-------S--S-S-SSSS-----SSSSSSSSS-SSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSS---S-S-
---S-SS-S---------SS-SS-S-SSSS-SS-SSSSSS-SS--SS-SS-SSSSS------------------------
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---------S--S---S-SSS--S--SS-----SS--SS---S--SSSSSS--SSSSSSSSSSS-SSSSSSSSSS----S
SSSS--SSSSSSSSS-S-SSSSSSSSS----SSSSSSSSSSSSS------------------------------------
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>forward_116
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----------------GGCCATACGTTGTGACCTGA--------------------------------------------
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>reverse_2158
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-----------------------------------------------------------------------------GGC
CGACCCTAGTCCAAAAA---------------------------------------------------------------
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