>input_sequence_82587
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---------------------------------------------------------------ATGGCGTCCGCCGCTCC
ACCCGCTTTCCTCCCCCAGCTAGTTCAGCTGGTACAGCCTGTGTCGGTCCTGCCCGACCAGCTCATGAG---GCAGGCGG
CGGAGAGATCGCCGCCACCTCAGAGGGAAGGCTGCAGCGGGGCGATCGGCCCCACGCGGCAGCCACCTAGCGCGCCGGCG
GAGAGCACCGGCGGCGAAGTCATGGTCCTTAACGACGCTTCTTCCCTGGCCCCGCAGCTGAGGCCGACGCCTCCCGGGG-
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---------------------------------------------------AAGGCGCCGGCGGGAGGATCCATCGTCAG
CTTGCCGGACCCAAGCGTCCTGGCCCACCGAGAGAAGGCCGCGGTGGCGGCGGCGGCGTGATCCATGCCTTTTCTTCTTG
A-------------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G181000
TTGGGCCCGCGCGTGGTGTAAACCTATCAGGACCAGACGCCAGGGTCCTTGGCGTCTGGCCCCTTTGCCACGTCAGCGGG
TCAACGGGCAGGCGGGCAGTGCGGGCCAGGGTCCAGACGCCAGGGTTCGTGGCGTCTGCTTCGCAACCCAGACGTCAGGG
ATGTTGGCGTCACCTAAAAAGGTTAGAAACGAAATTTGTTTTCGAACGAGGTCAAAGCGGGATTTTGTTAGCCTTTAAGG
TCATAACAGTAATTTTGTCCCACCAATGGCTCATTAATAACATAAGGAGTGCGGATCGCCTGTGAGCAAGGGTCAAAGCG
GGATTTTGTTAGCCTTTAAGGTCATAACAATAACCCGGGGATCAATCAGCTGTGACTTGAGACCGAATCAAATACGCTTT
GTACGTCCCTCAGTTTTAGAAC--TTAGACGTCTCTGACATGCACCGGTGTAGTCAAACTTTGACTACACATAGGGAGTA
TATATATTTGAAGTATATTTGACAATCTAACCAGCACTGTTGTAGTTTAGTTCAATGTCAGCAGCAAACTGTATGCTGCC
TCCAGACTTGGCCGTTGCTGAAGCTTATTGTATCCAGGATAGAAATGCAGTA----------------------------
----------GTAGGCTTTCACACCGGGGCACTTGGTCGGGTTCTTGACCGTAGCCAGG-----------TCGGAACCAA
CCGATGCATCCCGCGCGTTGGATATGGTCAAT-----------------CCA---------CGGACGTGGTTCTCCGGTA
GCCCGGAAGAGCA---TGCCATAACACGCGAGCGCGCGTGCGAGGTT-------TCCATTCCGCAGACCTGTTCAGCGGC
TAACCAGGTCTGGTCACTGCTCGATCGGTCTTGCTCCGCGTCCGTCGACCGATCCTCGTACGCGCGGCATTATAAGTTCC
GCTCGTCCGCTGCACCAATGCATCCATCA----------GCTAACTCGAA--AGAGAGGAGTGCAGAACATCCTCTA---
-CGCTCTCGATCGCGATCACTGAGACTGTGAACAGTGAACTGTCTCCACGGCCACGCGCAGCAATGGCGTCCGCCGCTCC
ACCCGCTTTCCTCCCCCAGCTAGTTCAGCTGGTACAGCCTGTGTCGGTCCTGCCCGACCAGCTCATGAG---GCAGGCGG
CGGAGAGATCGCCGCCACCTCAGAGGGAAGGCTGCAGCGGGGCGATCGGCCCCACGCGGCAGCCACCTAGCGCGCCGGCG
GAGAGCACCGGCGGCGAAGTCATGGTCCTTAACGACGCTTCTTCCCTGGCCCCGCAGCTGAGGCCGACGCCTCCCGGGG-
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---------------------------------------------------AAGGCGCCGGCGGGAGGATCCATCGTCAG
CTTGCCGGACCCAAGCGTCCTGGCCCACCGAGAGAAGGCCGCGGTGGCGGCGGCGGCGTGATCCATGCCTTTTCTTCTTG
AGTTCTAGGCTTC-------------------------------------------------------------------
----------------TAGC--CATTAGCCAGATACTAGTTCGCAGATTGAGCGTCTAGCTA---AAGTGTACACTGTCT
AAGTCTCTAGTGCGTCCTTCGTGAACTTCAGATAAAAGTAGCATAAAAGCCGTACCTTGTCGCGAGGATTATATGATGTT
TTTAGTGAGTTTATATGAAATGCTTAAATATTA--AGTTTGTACTTTTAAACACAGAGTTGCAAAGTTCAAAAAAGTGTT
GAAGTGCATTAGTAAATTGAAATGTTATGTTTTG-TTACGTTAGTTTTCTAAC-----------------ACAGTGGTCG
CATTTGTTAGAAGTCGTAAACTGAATTTTGTAACATGCGTTGATCTA--ATAATCATTGTGTTTATTTTTCAATAT--CT
GTCCACAAAGAGACACCATTCTACCTGCACCATGTACT----TTTTATTAAAATACATTTTTTCGCCAGAAAGATATTTT
ATTAATGATGGGTCTTTCATCTAGAGGACAGTAAACAAGTTTCAATCGCCAAAATTCGAAAGGCTTGATTGATCCTCGAT
ATAATCCAGTGACTGATCTTTTTAGAGGGGCATTTCAGAATAAAGAGGGACAAGTTGGCTGAATATTTCCAGGAGAAACG
AATCAACATTAAAATACTAATGCTGTAATGTGCGAACATCTTTGATTGATCCACGTGAGTGCAAATGGTCTACAATGTCC
AATTAGATTTCCTATCCAACAGTGTCCATTTATTTTCTTGCAATAATTTGGAGGGACAATCACGGGCCCGTGTTTATTTC
CTGGCACTCTCACAATTCATAACCCGCACCCATCGGAGAGGATTTGTGTCACGCAGGGGCGGGGGCACACGGATTCTCGT
CCGCCAATCTGCACCAATATTCGAAAAGTCGTTTGTGTATATGGGTTATTTGCTCTTGTATAACGTTCGTTATATGTGTG
CAATGCATTTGTAAATCGGTCCGATATACCTATATATGTGGGTCGCATATATGCTGGTATCAGGTCACCTAACATCG
>chr2D_342
TCATTA--------------------------------------------------------------------------
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--------------------------ACAATAA-CCGGGGATCAATTAGCTGTGACTTGAGACCGAATCAAATACGCTTT
GTACGTCCCTCAGTTTTAGAAC--TTAGACGTCTTTGACATGCACCAGTGTAGTCAAACTTTGACTACAGATAGGGAGTA
TATATATTTGAAGTGTATTTGACAATCTAATCAGCACTGTTATAGTTTAGTTCAATGTCAGCAGCAAACTGTATGCTGCC
TCGTGACTTGGCCTTTGCTGAAACTTATAATATCCAGCATAAAAATGCAGTA----------------------------
----------GTACGCTTTCACACGGGGGCACTTGGTCCGGTTCTTGACCGTAGCCAGG-----------TCGGAACCAA
CCAATGCATCCCGCGCGTTGGATCGGATCAAT-----------------CCA---------CGG----------------
-------ACGTGGTTCTCCGGTAACCCGGAAGA--GCGTGCGAGGTT-------TCCATTCCGCGGACCGGTTCTGCGGC
TAACCAGGTC-----ACTGCTCAACCGGTCTTGCTCCGCGTCCGTCGACCGATCCTCGTACG-GCAC---TATAAGTTCC
GCTCATCCGCTGCACCAATGCATCCATCAA----------CTAATTAGCTCGAAAGAGGAGTGCAGGGCATCATCTACGC
TCGCTCTCGATCTCGACG----------------GTGAACTGTCTCGACGGCCACGCGCAGCAATGGCGTCCTCCGCTCC
ACCCTCCTTCCGCCCCCAGCTGGTTCATCTGGTACAATCTGTGTCGGTCCTGCCCGACCAGCT---------------GA
CGGAGAGATCGCCGCCGCCTCAGAGGCAAGGCCGCAGCGGGGCGATCACCCCCGCACCGCAGCCACCTAGCGCGCCGGCA
GAAGGCACGGGCGACCAAGTCATGGTCCTCAACAACGCTTCTTCCCTGGCCCCGCAGCTGAGGCGGACGCCTCCCGGGG-
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---------------------------------------------------AAGGCGCAGGCGGGAGGATCCATCGTCAG
CTTGCCGGACCCAAGCGGCCTGGCCCACCGAGAGAAGGCCGCGGTGGCGGCGGCGGCGTGATCCATGCTTTTTCCTCTTG
ATGAG-----TTC-------------------------------------------------------------------
----------------TAGC--CATTAGCCAGA---TAGTTCGCAGATTGAGCGTCTAGCTACTAAAGTGTACACTGTCT
AAGTCTCTAGTGCGTGCTTCGTTTACTTTAGATATAATTACCATAAAAAACGCACTTGGCTGCGAGGATTATAAGATGTT
TTTAGTGAATTTATTTGAAATGTTTAATTATTA--AGTTTGTA-TTTTAAACACAGAGTTGCAAAGTTCAAAAAATTGTT
GAAGTGCATTAGTAAATTGAATTGTTATGTTTTG-T-ACATTAGTTTTCTGCC-----------------GCAGTTA---
------------------------------------------ATCTA--ATAATCATTGTGTTTATTTTTCAATATGTCT
CTCCATGAAGGTACACCATTCTACCTACGGCATGTACT----TTTTATTAAAATACA-TTTTTCACCAGAAAGATATTTT
ATTAATGATGTGACTTTGATCTAAATGACAATAAACAGGTTTCAATCACCAAAACTCAAAAAGCTTGATTGATCCTCGAT
ATAATCTAGTGATTG-----------------------------------------------------------------
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>chr2D_342
TCATTA--------------------------------------------------------------------------
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--------------------------ACAATAACCCGTGGATCAATCAGCTGTGACTTTAGACCGAATCAAATACGCTTT
GTACGTCCCTCAGTTTTAGAAC--TTGGACGTCTTTGACATACACCAGTGTAGTCAAACTTTGACTACACATAGGGAGTA
TATATATTTGAAGTGTATTTGACAATCTAATCAGCACTGTTATAGTTTAGTTCAATGTCAGCAGCAAACTGTATGCTGCC
TCAAGACTTGGCCGTTGCTGAAGCTTATTATATCCAGGATAGAAATGCAGTA----------------------------
----------GTACGCTTTCACACCGGAGCACTTGGTCGGGTTCTTGACCGTAGCCAGG-----------CAGGAACCAA
CCAATGCATCCCGCACGTTGGATCGGATCAAT-----------------CCA---------CGG----------------
-------AGAGCA---TCCCGTAACACGCGAGCGCGCGTGCGAGGTT-------TTCATTCCGCAGACCGGTTCAGCGGC
TAACCGGGTCTGGTCACTGCTCGATCGGTCTTGCTCCGCGTCCGTGGACCGATCCTCGTACGCGCGGCATTATAAGTTCC
GCTCATCCGCTGCACCAATGCATCCATCA----------GCTAGTTAGCTCGAAAGAGGAGTGCAGGGCATCATCTACTC
TCGCTCTCGACCGCGATCACCGAGACGGTGAACAGTGAACTGCCTCGACGGCCACGCGCAGCAATGGCGTCCACCGCTCC
ACCCGCTTTCCTCCCCCAGCTGGTTCAGCTGGTACAGTCTGTGTCGGTCCTGCCCGACCAGCT---------------GA
CGGAGAGATCGCCGCCACCTCAGAGGGAAGGCCGCAGCGGGGCGATCGCCCCCACGCTGCAGCCACCTAGCGCCCCGGTG
GAAGGCACCGGCGGCCAGGTCATGGTCCTTAACGACGCTTCTTCCCTGGCCCCGCAGCTGAGGCGGACGTCTCCCGGGG-
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---------------------------------------------------AAGGCGCAAGCGGGAGGATCCATCGTCAG
CTTGCCGGACCCAAGCGGCCTGAC---CCGAGAGAAGGCCGCGGTGGCGGCGGCGGCGCGATCCATGCTTTTTCCTCTTG
AGTTCTA--CTAC-------------------------------------------------------------------
----------------TACC--CATAAGCCAGA---TAGTTCGCAGATGGAGGGTCTACTGTCGG---------------
--ATGTCTAGTGCGTTAG--------------------------------------------------------------
---------------------------------------------------CACAGAGTTGCAAAGTTTAAAG--TTGTT
GAAGTGCATTAGTAAATTGAAATGTTATGTTTTG-TTACATTAGTTTTCTATACGGCGGTTAAGGCAGTTACAGTGGTCA
CAGTTGTTAGAAGCCATAAACTGAATTTTGTAACATGTGTTAATCTAATATAATCATTGTGTTTATTTCTCAATATGTCT
GTCCAGGAAGAAACACCATTCTACCTACGGCGTGTACTTTTATTTTATTAAAATACATCTTTTCACAAGAAAGATA----
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>chr2A_345
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------------------------TAATAATAGCCAGGGGATCAATCAGTCAAGATCTGAGACTGGATCAAGAACGCTTT
GTACGTCCCATAGTTTTAGAACACTTCGACGTCTTTGACATGCACTGGTGTGGTCAAACTTTGACTACACATATA-----
-ATATATTTGAAGA--ATTTGACAATCTAATCAGCATGGTTATAGTTTAGTTCAATGTCAGCAGCAAACTGTATGCTGCC
TCGAGACTTGGCCGTTGCTGAAACTTATTA-ATCCAGGCTAAAAATGCAGTAGCAGCAGACTGAGCAGTTTAAATTTATA
TGGAGACAATGTACGCTTTCACACGGGTGCACTTGGTCGCGTTCTTGACCGTAGCCAGGTAGTCGGAAACTCGGAACCAA
CCAATGCATCCCGCGCGTTGGATCGGATCAATCCACGGACGGCGTCAATCCA---------CGG----------------
-------AGAGCA---TCCCGTAACACGCGAGCGCGCGTGCGAGGTT-------TTCGTTCCGCAGACCGGTTCAGCGGC
TAACCTGGTCTGGTCACTGCTCGATCGGTCTTGCTCCGCGTCCGTCGACCGATCCTCGTACG-GCAGCATTATAAGTTCC
GCTCATCCGCTGCATCACTGGATCCATCA----------GCTAGTTAGCTCGAAAGAGGAGTGCAGGACATCGTCTA---
-CGCTCTCGACCACGATCACCGAGACGGTGAACAGTGAACTGCCTCGACGGCCACGCGCAGCAATGGCGTCCGCCGCTCC
ACCCTCTCTCCTCCCCCAGCTGGTTCAGCTGGTACAGCCTGTGTCGGTCCTGCCCGACCAGCTCATGAGGCCGCAGGGGA
CGGAGAGATCGCCGCCACCTCCGAGG------------------------------------------------------
------------------------------------------------------------------------------G-
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---------------------------------------------------AAGGCGCAGGCGGGAGGATCCATCGTCAG
CTTGCCGGACCCAAGCGGCCTGACTCGCCGAGAGAAGGCCGCGGCGGCGACGGCGGCGTGATCCATGCTTTT-CCTCTTG
AGTTCTA--CTAG-------------------------------------------------------------------
----------------TAGCCACATTAGCCAGA---CAGTTCGCAGATTCAGCGTCTGG---CTAAAGTGTACACTGTCT
AAGTCTCTAGTGCGTCCTTCGTGAACTTTAGATGAAATTAGCATAAAAATCACACTTTGTTGCGAGGATTATAAGATGTT
TTTAGTGAGTTTATTTCAAATGTTTAAATATTA--AGTTTGTACTATTAAACACGGAGTTGCAAAGTTCAAAAAATTGTT
GAAGTGCATTAGTAAATTGAAAGGTTATGTTTTG-T-ACATTAGTTTTCTACC-----------------GCAGT-----
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>chr2A_349
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----------------------------AATAACCCGGGGATCAATCAGCTATGACTTGAGACCGAATCAAATACG-TTT
GTACGTCCCTTAGTTTTAGAAC--CTAGACGTCTTTGACATGCGCCCGTGTAGTCCAACTTTGACTACACATAGGGAGTA
TATATATTTGAAGTGTATTTGACAATCTAATCAGCACTGTTATAGTTTAGTTCAATGTCAGCAGCAAACTGCATGCTGCC
TCGAGACTTGGCCGTTGCTGAAGCTTATTATATCCAG-ATAAAAGTGCAGTA----------------------------
----------GTACGCTTTCACACCGGGGCACTTGGTCGGGTTCTTGACCGTAGCCAGG-----------TCGGAACCAA
CCAATGCATCCCGCGCGTTGGATCGGATCAATCCACGGACGGCGTCGAACGACGTGGTTCCCGG----------------
-------AGAGTA---TTCCATAACACGCGAGCGCGCGTGCGAGGTTTTCAATTTTCATTCCGCGGACCTGTTCAGCGGC
TAACCAGGTC-----ACTGCTCGATC-GTCTCGCTCCGCGTCCGTCGACCGATCCTCGTACG-GCAC---TATAAGTCCC
GCTCATCCACTGCACCAATGGACACATCAAGTAATACTAGCTAATTAGCTCGAAGCAGGAGTGC-GGACATCCTCTA---
-CGCTCTCGACCGCGATCACCGAGACGGTGAACAGTGAACTGCCTCGACGCCCACGCGCAGCAATGGCGTCCTCCGCTCC
ACCCGCTTTCCTCCCCCAGCTGGTTCAGCTGGTGCAGCCGGTGTCAGTCCTGCCCGACCAGCTGATGAG---GCAGGCGA
CGGAGAGATCGCCGCCACCTCAGAGG------------------------------------------------------
------------------------------------------------------------------------------GG
AGGCCGCAGCGGGGCGATCGCCCCCACGCCGCATCCACTGAGCACGCCGGGGGAGAGCACCGGCGGCGAATTCTTGGTCC
TTAACGACGCTTCTTCCCTGCCCCTGCAGCTGATGCGGACGCCTCCAGGGGAAGGCGCCGGCGGGAGGATCCATCGTCAG
CTTGCCGGACCCAAGCGGCCTGGCCCACCGAGAGAAGGCCGCGGTGGCA---GCGGCGTGATCCATGCTTTTTCTTCTTG
AGTTCTA--CTCCCTTCGTTTCAAATTACTTGTCGCAGAAATGGATGTATGTTATATCCATTTATGCGACGAGTAATTTG
AAACGGAGGAAGTACGTAGC--TACTAGCCAGA---TAGTTCGCAGATTGAGGGTCTAG---CTAAAGTGGACATTGTCT
AAATCTCTAGTGCGTGCTTCGTGAACTTTAGATAAAACTAGCATAAAAACTGTACTTTGTTGCGAGGATTATAAGCTG-T
TTTAGTAAGTTTATTTGAAATGTTTAAATATTATAAGTTTCTATTTTTAAACATAGAGTTGCAAAGTTCAAAAGTC-GTT
GAAGTGCATTAGTAAATTGAAATGTTATGTTTTACT-ACATTAGTTTCTACAGCAGT-----------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------------
----------------------------------S---------------------------------------------
--------------S---------------S----------S--------------------------------------
--S--------------------------S--------------------------------------------------
-------------S------------------------------------------------------------------
--S--------------------SS-S-------------------------------------SSSSSSSSSSSSSSSS
SSSSSSS----------S--------------------------------------------------------------
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----S---------------------------------------S-S-SS---S------------S-------------
--------------------S-----S-------------------S---------------------------------
---------------------S---------------------------------------------------------S
--------------------------------S---------------S--------S----------------------
--SS-----------S------------------------------------------------S---------------
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-----------------S--------------------------------------------------S-----------
-------SS-----------------------------------------------------------------------
---------------------------------SSS--------------------------------------------
----------------------------S--------S----------S------S----S------------S------
--------------S-------S----------------------------------------------------S----
---------------------------------------S---------------------------------------S
--S----------S-S---------------------S---S--------------------------------------
-----SS----S--------------S-SS----------------------------------S---------------
----------S-S----S-----S-S----S------S---------S------S--S---S------------------
------S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_177
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-----------------------------------------------------------------------------GGG
ATGTTGGCGTCACCTAA---------------------------------------------------------------
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>reverse_2447
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----------------------------------------------TTTGGAGGGACAATCACGGG--------------
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