>input_sequence_82586
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--------------ATGTCGGCGCTTCGATCCTTCCTTGGGAAGCTGCCGCGGCCCTCCTGCCGCCAGGCCGTCCTCGGT
GGCACCGTCGCGTCCGCCGCGGCGGCCGGGATCTGGTACCTCCAACAAAACGGCGACAAAG------CAGCACCAGCACC
TGGTACGTACCTACGGATTTAATCTGATCTTTCCATCCAAATTTGTTACTGTATTTTTCCTCTAAGCGTGACTAATTACG
CCATGCGCGTATTTTCAGTACCCGGTAGGCTTGGTGCCGAGGAGGAGGCCATGAAGAAAGAGACGCAGCGGGCAGCTGAG
GAGGCGGCGGCCAAGAAAGCGCAGCACGCCGGGGAGGAGGCGGCCACGAAGAAGAAGACATAG-----------------
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>chr2A_1_TraesCS2A01G261300
CTTGGTTCTGCAGAG---TACTTAATAGTGAAACAAAATT-CCAAATTAGAGTACGACACCACCAAGAACAGGAGC----
---------------------AAATGCATCATGCACACACAAGCAGATTTGACATGAA--AGTACAGGAAAATAGAAGTA
TACAGATAAATCGTAAATTTACTTGATATAGTAAAATTGGAATGCAACACAAATAGCAAACAAAGTTAACATCTATTTAC
CAGGAAAATGAACAACCGTATCGAGGATTTGTAGGTTCGCACCACGTCGCATGGGGCGGTTGGGAAGGAGCCGAGGAGCT
CACCACCGGCTTGCTGCT-GACGAGGGGGAGGAGGACACGAGCTGATCCTGGTGCGT--GAGAGAGAGA-----------
---GAGGAGGCGACGAACCGACCGCTACCGGAGATTCAGATGAGAGGTTGCGAGCCTGCGACGAGCACACTGC-GAGATG
AGCTTAGTAGCAGAGGAGATCTGATTTGATCTGCCTCAAACAGCACCGCCGGCGACGTGATCGCCAGGAGCCATCGTAGA
TTTTCTGAATTCGCCCAGCTTGAGGATGGATCTGGGC---CGCCGCCGCCGACAGCGTTGGGGCCGCCGCTCTGTACGCG
ATTTGGAATTGAACGACGAGGCCATCGAGACCAAATTAGCTTGCAGGGAAGGACATTTTTGCAAATTATGCGGACAGATC
ACTCCGCCTAAATCTGGGCCATCAGTCTCCCATCCGGTGGTCCACATCCATTTTTTCTATTTTTCTACCACAAGCATGTT
TTCTATTGTAGTTGCTCCCACTTGTTGGCCAAGATGTACCGGCCTTGGAGACGGTATGTTTGTGCCTTGGGAGTTGGATC
GTGTCTGTTGGATCGATCGTTTTTGCTTGGAGAACAAGCTTGATCGATGGGCAGGCGGGCAGGCATATAAAGACGCAGGC
AGCACGGCCTTCCTTCCTCCAACTACAACCTGCAGACCAAGACCAAGCGGCAAGCACCAACGCTTCGTTCA--AAAACCC
GTCGATAGCTAGCAATGTCGGCGCTTCGATCCTTCCTTGGGAAGCTGCCGCGGCCCTCCTGCCGCCAGGCCGTCCTCGGT
GGCACCGTCGCGTCCGCCGCGGCGGCCGGGATCTGGTACCTCCAACAAAACGGCGACAAAG------CAGCACCAGCACC
TGGTACGTACCTACGGATTTAATCTGATCTTTCCATCCAAATTTGTTACTGTATTTTTCCTCTAAGCGTGACTAATTACG
CCATGCGCGTATTTTCAGTACCCGGTAGGCTTGGTGCCGAGGAGGAGGCCATGAAGAAAGAGACGCAGCGGGCAGCTGAG
GAGGCGGCGGCCAAGAAAGCGCAGCACGCCGGGGAGGAGGCGGCCACGAAGAAGAAGACATAGATTA--TTATTATTATT
TTTGATGAAAAAGGAGATGGTAGG-TTTTTTTAGGGAGACATAGTTAGAACTAGTTATAATGGCGGTTGTG--CCAAATT
AGTTAATTATCTC---ATATACGAACGTTTAATTATGATTTGATGCGAGACAAATCTTTGTGAATGGGATCCT---TTTT
TGCAGTTTGGAGTTGTTTGGAGTTTTTTTTCCTAAGTACACTATAATA-----TAGTACGATTTCTGT-CACTGCAAAAA
GAACAATGATTTCTGAAAAAGAAGACGCTAGATCTTAAAATACTTTC-AGTCTTTGTGTCCCCGATTCCATAACTTTCTT
AGTATCCAAGAATCTACTCTTCACCCTGGCCAGGCACATGCGCTCTGTTCCCCGCCATCGTTGGTGGCTCGGTATTCTCC
CAAATTTTTGCTGACAAAGTCGGCCCTTTTAATGAAAGCACTTACT----GGTGCACTTCATAGTTGGCACGTTTAGTCC
ATCCTCAACGAGCACCAGACGCACGTCAGATCTTAATTACGGCAGTAGAAGCAGCCAGCAGCAACTCTAGCAGAGACCTC
CAATGTGACGCTCTCTGCGTCGAACGCTAACTATGACTAAAAATATATATGCAGTGGCGGGGATCACAGGCAGAGCTCCC
GGTAGGGCGAGGCAGGGCGCCCGCCCTACCTTGATTTTTGGCAGAAAGATTTATACATGTACGCATACGCTGAGTGGTTG
GCTGATTCTGTATGCGTGGAGTCAGGTCGCTAGGAAAAGGGAAAAAGAAGAAAAAGGAGTGGGCCTAGTCGCTCAGCTTC
GGTCCACACTGTTTAGGCCCACTAGTTCCTGCTGCCAGGCATCGTTCCCTAAGCGGAACTGTACAGCTAAGAATGAAGGA
GGGCTAGGTATTAGAAACCTCCAAGTCATTAATGAAGGCCTTATTCTTATTTCAGCTTGGAGACTTGCAGATGCTCCTAA
CTCTTATTTGTACCTTGTACTTAAATCCAAATACTTTCCGAACTT
>chr1A_1
CTTGGTTCTGCAGAG---TACTTAACAGTGAAACAAAATT-CCAAATTAGAGTACGACACCACCAAGAACAGGA-C----
---------------------AAATGCATCATGCACACACAAGCAGATTTGACATGAA--AGTACAGGAAAATAGAAGTA
TACAGATAAATCGTAAATTTACTTGATATAGTAAAATTGGAATGCAACACAAATAGCAAACAAAGTTAACATCTATTTAC
CAGGAAAATGAACAACCGTATCGAGGATTTGTAGGTTCGCACCACGTCGCATGGGGCGGTTGGGAAGGAGCCGAGGAGCT
CACCACCGGCTTGCTGCT-GACGAGGGGGAGGAGGACACGAGCTGATCCTGGTGCGT--GAGAGAGAGA-----------
---GAGGAGGCGACGAACCGACCGCTACCGGAGAATCAGATGAGAGGTTGCGAGCCTGCGACGAGCACACTGC-GAGCTG
AGCTTAGTAGCAGAGGAGATCTGATTTGATCTGCCTCAAACAGCACCGCCGGCGACGTGATCGCCAGGAGCCATCGTAGA
TTTTCTGAATTCGCCCAGCTTGAGGATGGATCTGGGC---CGCCGCCGCCGACAGCGTTGGGGCCGCCGCTCTGTATGCG
ATTTGGAATTGAACGACGAGGCCATCGAGACCAAATTAGCTTGCAGGGAAGGACCTTTTTGCAAATTATGCGGACAGATC
ACTCCGCCTAAATCTGGGCCATCAGTCTCCCATCCGGTGGTCCAGATCCATTTTTTCTATTTTTCTACCACAAGCATGTT
TTCTATTGTAGTTGCTC---------------------------------------------------------------
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>chr3B_1
CTTGGTTCTGCAGAG---TACTTAACAGTGAAACAAAATTTCCAAATTAGAGTACGACACCACCAAGAACAGGAGC----
---------------------AAATGCATCACGCACACACAAGCAGATTTGACATGAA--AGTACAGGAAAATAGAAGTA
TACAGATAAATCGGAAATTTACTTGATATAGTAAAACTGGAATGCAACACAAATAGGAAACAAAGTTAACATCTATTTAC
TAGGAAAATGAACAACCGTGTCGAGGATTTGTAGGTTCGCACCACGTCGCATGGGGCGGTTGGGAAGGAGCCGAGGAGCT
CACCACCGGCTTGCCGCT-GACGA---GGAGGAGGACACGAGCTGATCCTGGTGCGT--GAGAGAGAGAC----------
------GAGGCGACGGACCGACCGCTACCGGAGATTCAGATGAGAGGTTGCGAGCCTGCGACGAGCACACTGC-GGGCTG
AGCTTAGTAGCGGAGAAGATCTGATTTGATCTGCCTCAAACAGCGCCGCCGACGACGTGATGGCCAGGAGCCATCGGAGA
TTTTCTGAATTCGCCCAGCTTGAGGATGGATCTGGGCT---GCCGCCGCGGCCAGCGTTGGGGCTGCCGCTCTGTACGCG
ATTTGGGATTGAACGACGAGGCCATCGAGATCAAATTAGCTTGCAGGGAAGGACCTTTTTGCAAATTATGCGGACAGATC
GCTCCGCCTAAATCTGGGCCATCAGTCTCCCATCCGGTGGTCCAGATCCATTTTTTCTATTTTTCTACCACAAGCATGTT
TTCTATTGTAGTTGCTCCC-------------------------------------------------------------
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>chr5A_1
CTTAGTTCTGCAGAGTACTACTTAACAGTGAAACAAAATTTCCAAGTTAGAGTACGAAACCACCAAGAACAGGAGCAATA
CACCATCAAATCGAAGTTACTAAATGCATCATGCACACACAAGCAGATTTGACACGAACAAGTGCAGGAAAATATAACAG
TACAGATAAATT---------------------AAACTGGGATGCAACACAAATAGCAAACAAAGTTAACATCTATTT--
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------------GCCGCT-GACGAGGGGGAGGAGGACACGAGGTGATCCTGGTGCGT--GAGAGAGAGAGACAAAGAGAG
AGAGAGGAGGCGACGAACCGACAGCTACCGAAGATTCAGATGAGAGGTTGCGAGCCTGT-ACGAGCACACTGCAGGGTGG
AGCATAGTAGCCGACGATATCTGATTTGGTCTGCCTCAAACCGCGCCGCCGGCGACATGACAGTCAGGAGCCATCGGAGA
TTTTCTGACTTCACCTAGCTTGAGGATGGATTTGG------GCCGCCGCCGCCAGCCTTGGGGCTGCCGCTCTGTATGCG
A-TTGGGATTGAACGACGAAGCCATTGAGACCAAATTTGCTTGCAGCGAAGGACCTTTTTGCAAACTATGCAGACAGATT
GCTCCACCTAAATCTGGGCCATCAGTCTCCCATCGGGTGGTCGAGATCTATTTTTTCTATTTTTCTACCACAAACATGTT
TTCTATTGTAGTTGCTCCCGCTTG--------------------------------------------------------
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>chr2A_73
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---------------------AAATGCATCATTCACACACAAGCAGATTTGAGACGAACAAGTACAGGAAAATAGAACTG
TACAGATAAAGCATAAATTTACTTGATATAGTAAAATTGGGCTGCAGCACAAATAGCAAACAAAGTTAACATCTATTTAC
CAGGAAAATGAACAACTGTGTCGAAGATTTGTAGGTTTACACCAAGTCGCATTGGGCGGTTGGGAAGGACCTGAGGAGCT
CACCACCGGCTTGCCGCTAAACGAGGGGGAGGAGGTCACGAGCTGATGTGCCTG--------------------AGAGAG
AGAGAGGAGGCGACGAACCGACTGCTACCAGAGATTCAGATCAGAGGCTATGAGACTG--ACGAGCAAACTGCGGGGCGG
AGCTTATTAGCCGGGGAGATTTGATTTTGTCTACCTCAAACTGCACCGTCGGCGACACGACGGCCATCAACCATCGGAGA
TTATCTGAACTCGCCCAGCTTGAGGAGGGATCTGG------GCCGCCGCCGCCAGCGTTGGGACTGCTGCTCTGTAGGGG
ATTTGGGATTGAACGACGAGGGCACTGAGACCAAATTAGCTTGCAGGGAAGGACCTTTTTGCAAATTATCCGGATAGATT
ACTCCACCTAAATCTAGGCCATCAGTCTCCCATCCGGTGGTCCAGATCCATTTTT-CTATTTTTCTACCACAAGCCTCTT
TTCTATTGTAGTTGCTCCCTCTT---------------------------------------------------------
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>chr3A_73
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---------------------AAATGCATCATTCACACACAAGCAGATTTGAGACGAACAAGTACAGGAAAATAGAACTG
TACAGATAAAGCATAAATTTACTTGATACAGTAAAATTGGGCTGCAGCACAAATAGCAAACAAAGTTAACATCTATTTAC
CAGGAAAATGAACAACTGTGTCGAAGATTTGTAGGTTTATACCAAGTCGCATTGGGCGGTTGGGAAGGACCCGAGGAGCT
CATCACCGGCTTGCCGCT-AACGAGGGGGAGAAGGTCACGAGCTGATGTGCCTG--------------------AGAGAG
AGAGAGGAGGCGACGAACCGACTGCTACCGGAGATTCAGATCAGAGGCTACGAGATTG--ACGAGCAAACTGCGGGGCAG
AGCTTATTAGCCGGGGAGATTTGATTTTGTCTACCTCAAACTGCACCGTCGGCGACACGACGGCCAGCAGCCATCGGAGA
TTTTCTGAACTCGCCCAGCTTGAGGAGGGATATGG------GCCGCCGCCGCCAGCGTTGGGACTGCTGCTCTGTAGGGG
ATTTGGGATTGAACGACGAGGGCACTGAGACCAAATTAGCTTGCAGGGAAGGACCTTTTTGCAAATTATCCGGACAGATT
GCTGCACCTAAATCTGGGCCATCAGTCTCCCATCCGATGGTCCAGATCCGTTTTT-CTATTTTTCTACCACAAACCTCTT
TTCTATTGTAGTTGCTCCCAGCTT--------------------------------------------------------
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>chr3A_73
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---------------------AAATGCATCATGCACACACAAGCAGATTTGACACGAACAAGTGCAGGAAAATAGAACAG
TACAGATAAATT---------------------AAACTGGGATGCAACACAAATAGCAAACGAAGTTAACATCTATT---
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-----------TGCCGCT-GACGAGGGGGAGGAGGACACGAGGTGATCCTGGTGCGTGAGAGAGAGAGAGACAAAGAGAG
AGAGAGGAGGCGACGAACCGACAGCTACCGAAGATTCAGATGAGAGGTTGCGAGCCTAT-ACGAGCACACTGCAGGGTGG
AGCATAGTAGCCGACGATATCTGATTTGGTCTGCCTCAAACCGCGCCGCCGGCGACATGACAGTCAGGAGCCATCGGAGA
TTTTCTGACTTCGCCTAGCTTGAGGATGGATTTGGGCCGCCGCCGCCGCCGCCAGCGTTGGGGCTGCCGCTCTGTATGCG
ATT-GGGATTGAATGACGAAGCCATCGAGACCAAATTTGCTTGCAGCGAAGGACCTTTTTGCAAACTATGCAGACAGATT
GCTCCACCTAAATCTGGGCCATCAGTCTCCCATCGGGTGGTCGAGATCTATTTTTTCTATTTTTCTACCACAAACATGTT
TTCTATTGTAGTTGCTCCC-------------------------------------------------------------
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>chr2D_202
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------------------------------------------------------------------------CTATTTAC
CAGGAAAATGAACAACCGTGTTGAAGATTTGTAGGTTTACACCAAGTCACATTGGGCGGTTGGGAAGGACCCGAGGAGCT
CACCACCGGCTTGCCGCT-AACGAGGGGGAGGAGGTCATGAGTTGATGTGCCTG--------------------AAAGAG
AGAGAGGAGGCGACGAACCAAGTGCTATCGGAGATTCAGATCAGAGGCTACGAGATTG--ACGAGCAAACTGTGGGGCGG
AGCTTATTAGCCGGGGAGATTTGATTTTGTCTACCTCAAACTGCACCGTCGGCGACACGACA-CCAGCAGCCATCAGAGA
TTTTCTGAACTCGCC-AGCTTGAGGAGGGATCTGG------GCCGCAGCCGCCAGCATTGGGAATGCTGCTCTGTAGGGG
ATTTGGGATTGAACGACGAGGGCACTGAGACCAAATTAGCTTGCAGGGAAGGACCTTTTTGCAAATTATCCGGACAGATT
GCTCCACCTAAATCTAGGCCATCAGTCTCCCATCCGATGGTCCAGTTCCGTTTTT-CTATTTTTCTACCACAAGCCTCTT
TTCTATTGTAGTTGCTCCC-------------------------------------------------------------
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>chr2D_768
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-------------------ACTTGTTGGCCAAGATGTACACGCCTTGGAGACGGTATGTTTGTGCCTTGGGAGTTGGGTC
GTGTCTGATGGGTCGATCTTTTTTGCTTGGAGAAGAAGCTTGATCGATGGGCAGGCGGGCAGGCATATAAAGACGCAGGC
GGCACGGCCTTCCTTCCTCCAACTACAACCTGCAGACCAAGACCAAGCGGCAAGCACCAACGCTTCGTTCGG--AAACCC
GTAGATAGCTAGCAATGTCGGCGCTTCGGTCCTTCCTTGGGAAGCTGCCGCGCCCCTCCTGCCGCCAGGCACTCCTCGGT
GGCACCGTCGCGTCCGCCGCGGCGGCCGGGATCTGGTATCTCCAACAAAACGGCGACAAGCCAGCACCAGCACCAGCACC
TGGTACGTACCTACGGATTTAATCTTTTCTTTCCATCGAAATTTGGTACTGTATTTTTCCTCTAAGCGTGACTAATTACG
CCATGCGTGTATGGACAGTACCCGGCAGGCTGGGTGCAGAGGAGGAGGTCATGAAGAAAGAGACGCAGCGGGCAGCTGAG
GAGGCGGCGGCCAACAAAGCGCAGCACGCCGGTGTGGAGGCGGCCACGAAGAAGGAGACATAGATTTATTTTAT-TTATT
TTTGATGAAAAAGGAGATAGTAGGGTTTTTTTAGGGAGACATAGTTAGAACTAGTTATAATGGCGGTTGTGTGCCAAATT
AGTTAATTTATCTCATACATACGAACGTTTAATTATGGTTTGATGCGAGAC-AATCTTTGTGAATGGGATCCATCCTTTT
TGCA----------GTTTGGAGTTTCTTTTCCTAAGTACACTATAATATAGAGTAGTACGATTTCTGT-CCC-GCAAAAA
GAACAATGATTTCTGAAAAAGAAGACGCTACACCTTAAAATACTTTC-AGTCTTTGTGTCCCCGATTCCATAATTTTCTT
AGTATCCAAGAATCTACTCTTCACCCTGGCCAG-----------CTGTTCCCCGCCATCGTTGGTGGCTCGGTATTCTCC
CAAAAAATTTCTAACAAAGTGGGCCCTTTTAATGGAAGCA----CT----GGTGCACTTCATAGTTGGCACGTTTAGTCC
ATCCTCAACGAGCACTAGACGCACGCCAGATCTAAATTACGGCAGTAGCAGCAACTAAGAGCAACTCTAGCAGAGACCTC
C-------------------------------------------------------------------------------
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>chr2B_768
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-------------------ACTTGTTGGCCAAGATGTACACGCCTTGGAGACGGTATGCTTGTGCCTTGGGAGTTGGGTC
GTGTCTGATGGATCGACCTTTTTCGCTTGGAGAACAAGCTTGACCGGTGGGCAGGCAGGCAT--ATATAAAGACGCGGGC
AGCACGGCCTTCCTTTCTCCAACTACAACCTGCAGACCAAGACCAAGCGGCAAGCACCAACGCTTCGTTCGAGAAACCCC
ATAGATAGCTAGCAATGTCGGCGCTTCGATCCTTCCTTGGGAAGCTGCCGCGCCCCTCCTGCCGCCAGGCCGCCCTCGGT
GGCACCGTTGCGTCCGCCGCGGCAGCCGGGATCTGGTATCTTCAACAAAACGGCGACAAACCAGCACCAGCACCAGCACC
TGGTACGTACCTACGAATTTAATCTTTTCTTTCCATCAAAATTTGTTACTGTATTTTTCCTATAAGCGTGACTAATTACG
CCATGCGTGTATGGACAGTACCCGGAAGGCTGGGTGCAGAGGAGGAGGTCATAAAGAAAGAGACGCAGCGGGCAGTTGAG
GAGGCGGCGGCCAACAAAGCGCAGCACGCCGGGGAGGAGGCGGCCACGAAGGAGA---CATAGATTT--TTTAT-TTATT
TTTAATGAAAAAGGAGATAGCAGG-TCCTTTTTAGGGAG-------AGAATTAGTTATAATGGCGGTTGTG--CCAAATT
AGTTAATTTAACTCATATATACAAACGTTTAATTATGGTTTGATGGCAGAAAAATCTTTGTGAATGGGACCCATCCTTTT
TGCA----------GTTTGGAGTTTTTTTTCCTAACTA-----TAATA-----TAGTACGATTTCTGTCCCC-GCAAAAA
GAACAATGATTTCTGAAAATTTAGACACTACACCTTAAAATACTTTGTAGTCTTTGTGTCCCCGATTCCAT---------
---------------------------------------GCGCTCTGTTCCCCGCCATTGTTGGTGGCTCGGTATTCTCC
CAAATTTTTGCTGACAAAGTCGGCCCTTTTAATGGTAGCA----CTTACTGGTGCACTTCATAGTTGGCACATTTAGTCC
ATCCTCAACGAGC---AGACGCACGTCAGATCTTAATTAAGGCAGTAG--------------------------------
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>SNPs
-------------------------S------------------------------------------------------
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-----------------------------------------------------------------------------S--
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------------------------------------------------------S-------------------------
--------------------------------------------S-----------------------------------
---------------------------------------SS------------------------------------S--
-------S----------S-------------------------------------------------------------
----------------------------------------------------------------------S---------
--S-------------------------------------------------S---------------------------
--------------------------------------S---------------------S-------------------
-------------------------SS----------S------------------------------------------
-------S----SSS----------S-----S-----S----------S-------------------------------
--------------S---------------------------------------------------S----SS-S-----
------------------S-------------------------------------------------------------
--------SSSSS------------------------S----------------------------------S-------
----SSSSSSSSSS--------------------------------------------------------S-S-------
------------------------------S-S----------------------------------------S------
---------------------------------SSSSSS-----------------------------------------
----------------------------------S-----SSSS------------------------------------
---------------S--------------------------------S----S-S-SS---------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_878
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----------------------------------------------------------TTTGTGCCTTGGGAGTTGGA--
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>reverse_2239
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------------------------------------------------------------------------------TC
GGTCCACACTGTTTAGGC--------------------------------------------------------------
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