>input_sequence_82580
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---------ATGAGCCCCGAGCGGTTCGCGCCCAACGCCCAGGCCGGCCCGCGCGGGGCCTGCGCCGCCGACGTGTGGAG
CCTCGGCGTCACCGTCCTGGAGCTCTTCTTGGGGCACCGCCCTGTCCTGCCTGCCGAACGGACGCCGTCCTGGAAGATGC
TCAAGGAGGCCATCTGCTACGGCGAACCACCGGCGGTGCCGGAGAGCGCGGCGGCATCGGCGGAGCTGCGCGGGTTCGTG
GCCGCGTGCGTGCAGAAGGATCCTCGGAGGCGCGCCACAGTGCCGCAGCTGCTCGCGCACCCGTTCGTGGCGCGCCGGAA
CGTCGAGGCATCGCGCCGCGCGCTACGAGAGATTATCGTGGAGACCATGTAG----------------------------
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>chr1B_1_TraesCS1B01G419600
TATTTTTTCATGCGCGGTTGAATGTTGTGGTGGGCAATGGCGGAGCTACGTTGAAATAAAACAAGGCTATGGCCCGTCCA
GGATTGTACCAAAACAGTGAGCCTAGTGCTAAAATTGGGCCATGCGGATAGAAATCTTAGGGTTAACCTTCAGTTTGGCT
CACCCAACTTATTTGTTGTAGCTCCGCTACTGGTGGTGGGTATGCATGATTGCATGTTAAGATTGGGCCTTATCACATTC
ATAATTGTATGAAATGCCCATGAGCAAAGATC--------------------------------AAAACCAGATGTCAAC
TGCTTGGTTTAAAGATCAAGAGGAATTTCAAACGAAGGCTATCCAAGAATTGAAGAAAACTTTTTTGC----GGATACAT
GCCTTTGAGATTTCGCGAGCGGTAGTAATGCAACACAAGATTGCTGGATCTAAAACCTGCGCTGAACAGACTCGCCTTTG
AAGCCCAGCGAGGATGAGGTTTTACCGACATAGTTGAGGACAATAGGACGAGCCAGATGGAGCACGGCCCGTGGCGACGC
CGCACGGATGTCGGCCGAAGGTTGGTCACCCCCAGAGGAGAGGCCGCCATCGGCGACA-----ACAGTTGTCCATGTCGA
TGGCTATGCCAATGCAAACCGATCTTTAGATGGAAATACATATACATATTTTTTTTA-CTTGTCTACACATATTTATGTT
TTTCGATATATTTG---CAAAAGTTTAGGCCCGCTATTTTTTGGATAGAAATAAATGCAGACCAAAAGTAGAAGGGGGCA
-TTTCCACGTGACACGGCATGCAGCTCATGTGCTGTGCACAA-----GTCGGCCCTGCGCCGTTCACGCGCGGAAGCACA
GCCTGTAACAAAACTATGCTCAAAAAAAAAAAGTAAGTAACAAAACTGGAAAAGTGGAACGCGAGAATCGTGAGCTGTGG
ACTACGCCAG-------------GGTTTTC--------------------------------------------------
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------------TCTCGCGGATCTTCTCCCGCGCCGACGGCCA---CCGCTCTCCTCGGGTCCCCATCGCCGTCGGGACC
ACCGCGTACATGAGCCCCGAGCGGTTCGCGCCCAACGCCCAGGCCGGCCCGCGCGGGGCCTGCGCCGCCGACGTGTGGAG
CCTCGGCGTCACCGTCCTGGAGCTCTTCTTGGGGCACCGCCCTGTCCTGCCTGCCGAACGGACGCCGTCCTGGAAGATGC
TCAAGGAGGCCATCTGCTACGGCGAACCACCGGCGGTGCCGGAGAGCGCGGCGGCATCGGCGGAGCTGCGCGGGTTCGTG
GCCGCGTGCGTGCAGAAGGATCCTCGGAGGCGCGCCACAGTGCCGCAGCTGCTCGCGCACCCGTTCGTGGCGCGCCGGAA
CGTCGAGGCATCGCGCCGCGCGCTACGAGAGATTATCGTGGAGACCATGTAGGATATCGGGACAGAGACAAGATCAATTG
TATTCTTGAGATTAGCTCTACTACTGTAGTTCTTTTTGAGTTATTTGTAGCTT--GATTATGGTGAAGATTTCTTTCGTC
AACCTGAACTTTTAGACAAGCTAGGTACCCC------CTTTTCTTATTAGTATCATG-TTTTTTTTTTGTCTCTCAAAAT
GGATTCGACAATCCAAAGGTAGTTTGGGCAATGCTACACGTCCGTCGAATGATAAATCAATTAAATGGGCTACCTTGGCA
ACCATCAGATGTCTCCGAAACAGTCGTCCGATCTTCTAACCCAGCCAGTTGG----------------GTACCTTTGCAA
CAGCTACCTTGTTATGCTTAGGAGCTTTGCAACAACGACCTTGTTTCAAGGTTCGC------------CAAGATAGCGGT
TGACCGAGAAAGGCCACACCCTTGGCACGAGTGAAGTCGCCGCTCCGTCGCCCCGCCATGGCTTGAGTATCTCGGCCATG
GAGCACCGCCGCTCGCCAAAGTTGCTGCTTCTCCTCAGCCTTAGCCCCGTGAGTAGCTGGCAGCTCTACTTTAGCACCAT
GTCGACAACCTCTCATGTTGGGCGCTCGTTTGGCGTTTCCTTCAAATGCAGCTATGTTTCTGAAACACGCATGTTGAATG
TCCGACCCCTCACTCTCTAACGCCAGTCACCCCGTCGGCACTTTCTGCAACAGGGACTATGTTTTTGAAACAAGACTCCT
GTTGCAGAAAGAAAAACCTTCATCGCCAAACCCATTTTTTCTTTCTGAAACAAGACGTCAATAGCAGAAATCTTTTGGAA
CAAGACCTCCATTGCAGAAAAAAGCCCTTCACCAACAAATCTA---TTTTTTCCTGAAGATAGTCCTCTATTGCATAAAT
CTACCGAAACAAGACCCTTGTCGCACGAAAAAAAAGCTGGCTGCGCGAGACTTGCGTGAGCGCTCGATTAGGATTGATCC
AATGGCTACGCAAGCGGCGGACATTGCGCATGCATCAGCCAGC-GAAGGGTAG
>chr1B_3
--TTTTTTCATGCGCGGTTGAATGTTGTGGTGGGCAGTGGCG-AGCTACGTTGAAACAAAACAAGGCTATGGCCCGCCCA
GGATTGTACCAAAACAGTGAGCCTAGTGCTAAAACTCGGCCATGCGGATAGAAATCTTAGGCTTAACCTTCAGTTTGGCC
CACCCAACTTATTTGTTGTAGCTCCGATACTGGTGG---GTATGCATGATTGCATGTTAAGATTGGGCCTTATCACATTC
ATAATTGTATGAAATGCCCATGAGCAAAGATC--------------------------------AAAACCAGATGGCAAC
GGCTTGGTCTAAAGATCAAGAGGAATTTCAAATGAAGGCTATCCAAGAATTGAAGAACACTTTTTTGC----GGATACAT
GCCTTTGAGATTTCGCGAGTGGTAGG-----AGAACAAGATTGTTGGATCTAAAACATGCGCCAAATGGACTCGCCTTTG
AAGCCCGACTAGGATGAAGTTGAACCGACATAGTTGAGGACAACAGGACGAGCCAGATGGAGCACAACCCGTGGCGACGG
CACACGGATGTCGACCGAAGGTTGGTCACCCCCAGAGGAGAGGTTGCCATTGGCGGCACGGCAGCAGTTGTCCATGTCGA
TGGCTATGCCGATGCAAACCGATCTTTCGATGAAAGTACATATATGTATTTTTTTTTGCTTGACTGTACATACTTATGTT
TTTCGATATATTTGTACTAAAAGTTTAGGCACGCTTTTT-TTGGATAGAAATAAATGTGGACCAAAAGTAGAAGGGGGCA
TTTTCCACGTGACACGGCATGCAGCTCATGTGCTGTGCACAGCACAGGTCGGCCCTGCGCCGTTCACGCGCGGAAGCACA
GCCTGTGAA--TG--------------AAAGAGTAAGTAACAAAACTGGAAAAGTGGAACGCGACAATCGTGAGCTGTGG
ACTGCGCCAC-------------GGTTTGGTTTGAACGACGATGACGACGGACGGCTCTTTCC----TTCCTTGGTCTCT
ACTCCAAGTCGCTTTCCAACTCCGATCCCTCCTCCTCTCTCCGACACTCGGTCCACCGCTGGCAGTCGCTGGCAGGTGGT
CCCCGTGGACTCCTGTCCTTGCCTGCGGGCCGCTAAAGACGGAACAAGAACGGGCCGGGCGCGTCCGGCCGAGCTATAGC
TGCTTCTGGAAAAAACCGCTGGCCCGCGTCCGCATGGCGCCCGGCGGCACGATGCCCCCGTGCGCGCCCCACCTCATGTT
CCGCCGCCCGGGCCTCGCCGCGCCTGCGCCTCACGCCG---TCGTGCCGCCGCCTGCCGCCGCTGGCATGGACAAGGAGG
ACGG------------GGAGCGCCGGCTGAGGCTGTCCGACCTGGAGTGGCTGGCCGACCTCGGCGAGGGCGCGAGCGGG
GTGGTGACCAAGGTGCGCCTCCGCGG---CACCGCCGGCCCCGCGTTCGCGCTCAAGGTCGCGCACTACCCCGACGACAC
CGACGCGGGGAGGGAGCAGGACGAGGTGCTCCGCCGCGCGTGCGGGGCCGGGCCGCCGTCGCCGTACGTGGTGCGCTGCC
ACGCCGTCCTCCGCGGCGAAGGCGGCGAGCCCGCGTGCCTCCTCGAGCTCATGGACGCCGGGTCGCTCCACGACGTCCTC
CGCCGCCGGGGCGGCCTCCCT---------GAGCCCGCGCTCGCCGAGGTGGCCGCGCGCTGCGCCCTCGGGCTCGCGCA
CCTCCACGCGCGCGGCGTCGCGCACCTCGACCTCAAGCCCGACAACCTGCTCGCCAGCGCCCGCGGGGACGTCAAGATCG
CCGACTTCGGCGTCTCGCGGATCTTCTCCCGCGCCGACGGCCATCAGCGCTCTACCCGGGTCTCCGTCGCCGTCGGGACC
ACAGCGTACATGAGCCCCGAGCGGTTCGCGCCTAACGCCCAGGCCGGCCCGCGCGGGGCCTGCGCCGCCGACGTCTGGAG
CCTCGGCGTCACCGTCCTGGAGCTCTTCTTGGGGCACCGCCCTGTCCTGCCTGCCGAACGGACGCCGTCCTGGAAGATGC
TCAAGGAGGCCATCTGCTACGGCGATCCTCCGTCGGTGCCGGACAGCGCGTCGGCGTCGGCGGAGCTGCGCGGGTTCGTG
GCCGCGTGCGTGCAGAAGGATCCCCGGAGGCGTGCCACGGTGCCGCAGCTGCTCGCGCACCCGTTCGTGGCCCGCCGGGA
CGTGGAGGCATCGCGCCGCGCGCTACTAGAGATTATCGTGGAGACCATATAGGATATCGGGACAGAGACAAGATCAATTG
TATTCTTGAGATGAACTCTATTACTGTTGTTCTTTTTGAGTTATTTGTAGCTA--GATTATGGTGAAGATCTCTTTCATC
AACCTGAACTTTTAGACAAGCTAGGTAC----------------------------------------------------
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>chr1D_202
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-----------------------------------------ATGCATGATTGCATGTTAAGAT-GGGCCTTATCACGTTC
ATAATTGTATGAAATGCCCATGAGCAATAGATCAAAAACTAGATGTCAGTTGGCTTACCCTAAAAAAAAAAGATGTCAGC
TGGCTTGGTTAAAGGTGAAGAGGAATTTCAAATGAGGGGTATCCAGAAATTGGAGTTCACTTTTTCTTTCGGGGATACAT
GCCTTTGAGATTTTGCGAGTGGTAGTAATGCAGAATAAGATTGCTGGATCTAAAACCGCC---GAACAGACTCGCCTTTG
AAGCTCGGCAATGATGAAGTTGAACCGACATAGTTTCGGACAACACGACGAGCCAGATAGAGCACGATACGGTGCGACGC
CACATGGATGTCGACCGAAGGTTGGTCATCCCCAGAGGAGAGGCTGCCATTGGCGGCA-----GCAGTTGTCCATGTCGA
TGGCTATGCCGATGCAAACCGATCTTTCGATGGAAGTACATATATGTCTTTTTTT--GCTTGTCTACAGATATTTATGTT
TTTTAATATATTTG---TAAAAGCTTAGGCACGCCATTT-TTGGACAGAAATAAAAGTGGACCAAAAGTAGAAGGGGGCA
TTTTCCACGTGACACGGCATGCAGCTCATGTGCTGTGCACAG-----GTCGGCCCTGCGCCGTTCACGCGCAGACGCACA
GCCTGTGATTGTG--------------AAAGAGTAAGTAATAAAACTGAAAAAGTGAAACGCGACAATCGTGAGCTGTGG
ACTGCGCCAGGCGACCACGGTTTGGTTTGGTTTGAACGACGACGACGGACGACGGCCCTTTCCTTCCTTCCTTGGTCTCT
ACTCCAAGTCGCTTTCCAACTCCGATC---CCTTCTCTCTCCGACAGTCGGTCCACCGCTGGCAGTCGCTGACGGGTGGT
CCCCGTGGACTCGTGTCCTTGCCTGCAGGCCGCTAAAGCCGAAGCACG--------GGGCGCGTCCGGCCAAGCTATAGC
TGCTTCTGGAAAAACT-GCTGCCTCGCGTCCGCATGGCGCCCGGCGGCACGATGCCCCCGTGCGCGCCCCACCTCATGTT
CCGCCGCCCGGACCTCGCCGCGCCTGCGCCTCACGCCGCCGTCATGCCGCCGCCTGCTGCCACTGTCACGGACAAGGAGG
AGGAGGAGGATGGTGTGGAGCGCCGACTGAGGCTGTCCGACCTTGAGTGGCTGGCCGACCTAGGCGAGGGCGCGAGCGGC
CTCGTGACCAAGGTGCGCCTCTGCGGCAGCACCGCCGGCCCCGCGTTCGCGCTCAAGGTCGCGCACTACCCCGACGACAC
CGACGCGGGGAGGGAGCAGGACGAGGTGCTCCGCCGCGCGTGCGGGGCCGGGCCGCCGTCGCCGTACGTCGTGCGCTGCC
ACGCCGTCCTCCGGGGCGCCGGGGGCGAGCCCGCGTGCCTCCTCGAGCTCATGGACGCCGGGTCGCTCCACGACGTCCTC
CGCCGCCGGGGCGGCCGCGGCGGCCTCCCGGAGCCCGCGCTCGCCGAGGTGGCCGCGCGCTGCGCCCTCGGGCTCGCGCA
CCTGCACGCGCGCGGCGTCGTGCACCTCGACATCAAGCCCGACAACCTGCTCGCCAGCGCCCGCGGGGACGTCAAGATCG
CCGACTTCGGCGTCTCGCGGATCTTCTCCCCCGACGG------TCACCGCTCTCCCCGGGTCTCCGTCGCCGTCGGGACC
ACCGCATACATGAGCCCCGAGCGGTTCGCGCCCAACGCCCAGGCCGGCCCGCGTGGGGCCTGCGCCGCCGACGTCTGGAG
CCTGGGCGTCACCGTCCTGGAGCTCTTTTTGGGCCACCGCCCTGTCCTGCCTGCCGAACGGACGCCGTCCTGGAAGATGC
TCAAGGAGGCCATCTGCTACGGCGATCCTCCGTCGGTGCCGGAGAGCGCGGCGGCGTCGGTGGAGCTGCGCGGGTTCGTG
GAGGCGTGCGTGGTCAAGGATCCTCGGAGGCGCGCCACGGTGCAGCAGCTGCTCGCGCACCCGTTCGTGGCCGGCCGGGA
CGTCGAGGCGTCGCGCCGCGTGCTACGAGAGATCATCGTGGAGACCATGTAAGATATCGGGACAGAGACAAAATCAACTG
TATTCTTGAGATGAACTCTACTACTGTAGTTCTTTTTGAGTTATTTGTAGCTATAGATTATGGTGAGGATTTCTTTCATC
AACCTGAACTTTTAGACAAGTTAGGTACTCTTTTTAACTATTCTTATTAGTATCATGGTTTTTTGTTTGTCTCTCTTTTT
GGATTTGACAATCCCAAAAGTAGTTT------------------------------------------------------
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>chr1A_927
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------------TCTCGCGGATCTTCTCCCCCGACGG------CCACCGCTCTCCTCGGGTCTCCGTCGCCGTTGGCACC
ACCGCGTACATGAGCCCCGAGCGGTTTGCGCTCAACGCCCAGGCCGGCCCGCGTGGGGCATGCGCCGCCGACGTCTGGAG
CCTGGGCGTCACCGTCCTGGAGCTCTACTTGGGGCACCGCCCTGTCCTGCCCGCCGAACGGACGCCGTCCTGGAAGATGC
TCAAGGAGGCCATCTGCTACGGCGATCCTCCTTCGGTGCCGGAGAGCGCGGTGGCGTCGGCGGAGCTGCGCGGGTTCGTG
GAGGCGTGCGTGCAGAAGGATCCCGGGAGGCGCGCCACGGTGCCGCAGCTGCTCGCGCACCCGTTCGTGGCCCGCCGGGA
CGTGGAGGCGTCGCGCCGCGCGCTACGAGAGCTTATCGTGGAGACCATGTAGGATATCAGGACAGAGACAAGATCAATTG
TATTCTTGAGATGAACTCTACTACTGTAGTTCTTTTTGAGTTATTTGTAGCTATAGATTGTGGTGAAGATTTCTTTCATC
AACCTCAACTTTTAGACAAGCTAGGTACTCTTTTTAACTATTCTTATTAGTATCATGGTTTTTTATTTGTCTCTCAAAAT
GGATTTGACAATCCCAAAAGTAGTTT------------------------------------------------------
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>chr1B_1600
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---------------------------------------------------------CACTTACATGGGCTACCTTGGCA
ACCACTAGACGTCTCCGAAACAGTCGTCCGATCTTCTAACCCAGCCAGTTGAGTACCCAGCCAGTTGAGTACCTTTGCAA
CAGCTACCTTGTTATGCTTAGGAGCTTTGCAACAACGACCTTGTTTCAAGGTGAGTTTCAAGGTTCGTCAAGATAGCGGC
TGACCGAGAAAGGCCACACCCTTGGCACGAGCATAGTCGCCGCTCTGCCACCCCACCATGGCTTGAGTGTCTCGGCCATG
GAGCACCGCCGCTCGCCAAAGTTGCTGCTTCTCCTTAGCCTTAGCCCCGTGAGTAGGTGCCAGCTCTACTTTAGCACCAT
GTCGACAACCTCTCATGTTGGGCGCTTGTTTGGCGTTTCCTTCAAATGCAGCTATGTTTCTGAAACACGCATGTTGAATG
TCCGATCCCTCACTCTCTAATGCCAGTCACGCCGTCGGCACTTTCTGCAACAGGGACTATGTTTTTGAAACAAGACTCCT
GTTGCAGAAAGAAAAACCTTCATCGCCAAACCT-TTTTTTCTTTCTGAAACAAGACGTCAATAGCAAAAATCTTTTGGAA
CAAGACCTCCATTGCAGAAAAAAGCCCTTCACCCCCGAATCTTTTTTTTCTTTCTGAAAATAGTCATCTATTGCATAAAT
CTACTGAAACAAGATCCTTGTCGCATGAAAAAAACTGGCC--GCGTGAGACTTGTGTGAGCACTCGATTAGGATTGATCC
AATGGCTACGCAAGCGGCAGACATTGCACATGCATCAGCCGGCTGAAGGGTAG
>SNPs
SS----------------------------------S-----S-------------S-------------------S---
----------------------------------S-S------------------------S-----------------S
--------------------------S---------SSS-----------------------------------------
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--------------------------------S------------------------S----------------------
-------------------S------------SS----------------------------S-----------------
------S--S-------S---SS--------------------S----------------------S-------------
-S-----------S------------------------------S-----S----S-------S----------------
----------S----------------S-------S--------SS----------S-----------------------
-----------------S------------S--------S-----------------SS---------------------
-----------------------------------------S--------------------------------------
------S-SSSSSSSSSSSSSSSSSSS---S---------------------------------S---------------
---S------------------------SS--------------------------------------------------
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--------------------------------------------------------------S--S--------------
--------------------------------------------------------------------------S-----
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-------------------------S--S---S----------------------S------------------------
--------------------------------------S--------------------------------S------S-
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------------S-S-------------------------------------S------------------------S--
----------------------------S-S--------S------------------------S---------------
-----S--------S--SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S----------------
----SS---S-----------------------------------------S----------------------------
----------------------------------------------------SS-S-----------------------S
-------------------------------SSS-----------S-S-S----S-------------S-----------
-----------------------------------S--------------------S--S--------------------
--------------------------S-----------------------------------------------------
-----S--------------S---------S-------------------------------------------------
--------------------------------SS--------------------------------S-------------
---------------------------------SS-S-----S------S--S-----S------S--------------
----S---------S----------S--------SSSSSSSS---S--------S------S------------------
------------------S--------S------------S------------
>forward_503
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---CCCAGCGAGGATGAGGTTTT---------------------------------------------------------
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>reverse_3255
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------------------------------------------------------CGTGAGCGCTCGATTAGGAT------
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