>input_sequence_82569
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-------------------------------------------------------------ATGGTATTGAGTATTTTAA
TATTTAACTTCACATTCATTGCTCGTAATTTCTGGAACAGTGTGATCGCTTCGTCTGCACACTTATTTCTACAAAGACCT
CCCAGTATTATATTGTATGTGGAAATGTCCACCGTTGTTCCACTCTCGTTCATCTCATGGAACATTTTCTTTGCGGCAAC
AGTTCTCCCAGCACGAAACAACCCATCCAACATGATGCCATATGTAACAGTGCCAGGTTTAATTCTCTTACGCGGCATTT
CTCTAAACAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAAAATAGCCATCAAGAAGTGCACTATAAGTAACAACATCA
GACTCAACACCAACTGATTTCATGA-------------------------------------------------------
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--------------------------------------------------------------------
>chr1D_1_TraesCS1D01G055400
TCGGCAACCTCAAAGGCTC-AACATCCATTCTTCCAGGCCCCATTTGCCCTGACATATGAAACAGATAGCTCAACATAGC
ATCAGCAACCTCAAACATCAGTGAGCATTACATTACTAAAAATGCATTCATATGAAGAAAAGTGAACGCATTAGAGATTT
TACAAAATCCCAAGATTGCATACCTTTTCC-AAATCGCCATCAGAAGTCATTACCCCTAACATTCCATAGAAAATTTCTT
TGAATATGCAGTGCAAAAATCCATAAGATAAAACCCAACAAATCAAACAAAGAATTCATATGCAAAA---TCCTTTAAAT
CAAAGAGGCTCCTATGC-TTTC-CAATCGCCATCAGAAGTA---ATTACCCCTAAAATTGTAACCAGTCGCGTTAGACTA
ATTGTCTACCTTTCCTCG-CCCATCCAAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCCGGACACACCGCAA
AATGAACTCGACTATACAAGTAGGCAGTTTGGATTTCTTATACAGTTGTTCTGGCAGGACAGATTTGGCAAGCAATAACA
TAACTGTGCTTTCCGAGGAGTTAGTCTCATATGCAGCA--------TATCAACTAGTCAACCAAATCCATC--GAAAAAT
TGATACTTTGCAGGGAGCAACTTAATATCCTCCTGATGTTTCCCTTTCCTTGAAAAGAGAGACAACATCAATGAGGTAGT
TGAAGCTTCAAGTGAGATCCTCTTCCCATCAACTTTAGACAAATAATTTCCAGCCTTGGCTATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGACAGGAACTGGGAATGATACCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCCGTCTTTTAGAAGATTTCTTATCATTACTGCATAAGTAGATTCATTGGGCACCAACCCATTGGCTGA
CATTGCAGAAAACAAATCCTTAGCCTCTTCCTTTCTTTGAACCGTGTACATTGCATTAATCATGGTATTGAGTATTTTAA
TATTTAACTTCACATTCATTGCTCGTAATTTCTGGAACAGTGTGATCGCTTCGTCTGCACACTTATTTCTACAAAGACCT
CCCAGTATTATATTGTATGTGGAAATGTCCACCGTTGTTCCACTCTCGTTCATCTCATGGAACATTTTCTTTGCGGCAAC
AGTTCTCCCAGCACGAAACAACCCATCCAACATGATGCCATATGTAACAGTGCCAGGTTTAATTCTCTTACGCGGCATTT
CTCTAAACAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAAAATAGCCATCAAGAAGTGCACTATAAGTAACAACATCA
GACTCAACACCAACTGATTTCATGACATCAAGTATTTTGAATGCTTTATCCGTCTTCCCGACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATCAGGCCTCTCACCTATGCCTATAACCAAGTCTAAGACATCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAATTGAAGAACACAATGTTAGGCCGAGGAATACCACCGTTCATCATTTCA
AACATCAGCTCCTTAGCTTTAACCAAATCACCGTCTATGCAACAACCCTGAATCAGTGAGTGATAAACAGTTGTGTCCGG
CTGTACTTCCAAGGCAGTCATCTCATTGAATTTCTCAATAGCATCGGTCAGCCTACCCATTCTGGAAAGTGCGGCTATTA
CAATGGAATAGGTGACTACATCTGGACTCACTCCTTGTCCCCGCATTTCAGTAAATATCAGCATAGCTTCTTCTGTCATT
CCACGTTTTGCATATCCATTAATTAATATGTTGAAAACATGGCAGTCAGCTGCAATACCGTTGCTTTCCATTGAATTAAA
GAGATCAATCATATCAGCAAAGCATCCTTCACTGGCATACCCATGAAGCAAAATACGGTATGATACGATAT---CTGGTT
TGTGGCCCTTGGCAGTCATGGAATCAAGAAATTCTGCAGCTTCCTTGCTTCTCCCATGCTTGCAAAGGGAGGCCAGGAAC
GAGTTGCGAGTGACAATATCTGGTATAAGGTCCCGGCTTTTCATTTCTCTAAGCAATTTAGCAGCCTCTTTCGACTGCCC
AGATGTGGAATATCCATGGATCATGCAATTATATGTCACATTATTGGGTTGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGCCTTGTCCATTGCTCTGGCCTTGCACAATGCATCAATGATTGAGCTATATGTCCACACACTGGGCTCAACA
CCTTGCTGCATCATTTCATGGAACAGATTGCATGCCTTGCCTGTTTCACCTTCCTTAAAAAAGCCACG
>chr1B_1
TCGGCAACCTCAAAGGCTCAAACATCCATTCTTCCAGGCCCCGTTTGCCCTGACATATAAAACAGA-TTCTCAACATAGC
ATCAGCAACCTCAAACATCAGTGAGCATTACATAACTAAATATGTATTCATATGAAGAAAAGTGAACGTGTTAGAGATTT
TACAAAATCTCAAGATTGTGTACCTTCCCCAAAATCGCCATCAGAAGTCGTTACCCCTAATATTCCATAGAAAATTACTT
TGAATATGCAGTGCAAAAATCAATCAGATAAAACCCAACAAATCAAAAAAAGAATTCATA--------------------
----GAGGCTCCTATGT-TTTCTCAATCGCTATCAGAAGTA---ATTACCCCTAAAATAGTAACCAGTCATGTTAGACTA
ATTGTCTGCCTTTCCTCACCCCATCCAAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCCGGACGCACAGCAA
AATGAACTCAATTATACAAGTAGGCAGTTTGG-TTTCTCATACAGTTGTTCTGGCAGGAGAGCTTTCGCAAGCAATAACA
TAACTGTGCTTTCTTAGGAGTTAGTCTCATAGGCAGCATATCAAATTATCAACTAGTCAACCAAATCCATC--GAAAAAT
TGATACTTTGCTGGGAGCAACTTAATATCCTCCAGATGTTTCCCTTTCCTTGAAAAGAGAGACAACATCAATGAGGTAGT
TGACGCTTCAAGTGAGATACTCTTCCCATCAACTTTAGACAAATAATTTCCAGCCTTAGCAATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGACGGGAACTGGGAACGATACCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCCGTCTTTTAGAAGATTTCTTATCATTACTGCATAAGTAGATTCATTGGGCACCAACCCACTAGCTGG
TATTGCAGCAAACAAATCCTTAGCTTCTTCTTTTCTTTGAACCTTGTACATTGCATTAATCATGGTATTGAGTGTTTCAA
TATTGAACTTCACATTCATTGCTCGTAATTTCTGGAACAGTGCAATCGCTTCGTCTACACAATTAGTTTGACAAAGACCT
CCAAGTATTATATTGTATGTGGAAATGCGCACTGTTGCTCCACTTTCAATCATCTCATGGAACATTTTCATTGCAGCAAC
AGTTCTCCCAGCACGAAACAACCCACCCAACATGATGCCATATGTAACAGTGTTAGGTTTAATTCTCTTACATGGCATTT
CTCTAAAAAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAAAATAGCCATCAAGAAGTGCACTATAAGTAACAACATCA
GGCTCAACACCAACTAATTCCATGACATCAAGTATTTTGAATGCTGTATCCATCTTCCCAACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATCAGGCCTCTCACCTATGCCTATAGCCAAGTCAAAGACAGCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAACTGAAGAAAACAATGTTAGGACGAGGAATACCTTTGTTCATCATATCA
AACATCAGCTCCTTAGCTTTAACCAAGCCACCATGCATAAGACAACCCTGAATTAGGGAGTGATAAACAGCTGTGTTTGG
CTGAATTCCCATGGCAATCATCTGATTAAATTTGTCCATAGAATCAGTCAACCTACCCATCCTGGAAAGTGCAGCTATTA
CAGTGGAATATGTGACTACATTGGGACTCACTCCTTTTTCCCACATTTCTGTAAATATCAGCATAGCTTCATCCGTCATT
CCACATTTAGCATATCCATTAATTAATATGTTGAAAACATAGCAGTTGGCAGCAATACCGTTTCTTTCCATTGAATTAAA
GAGATCAATCATATCAGCAAAGCATCCTTCATTGGCATACCCATGAAGCAAAATACAGTAGGAGATGACAT---CT---C
TGTGCCCTTTGGCAGTCATGGCATCAAAAAATTCTGCACCTTCTTTGCTTCTTCCATGCTTACAAAGGTAAGTCATTAAG
GAGTTGCAAGTAGAAATATCTGGTATAAGGCCCCGGCTTTTCATTTCTCTAAACAATTTAACAGCCTCTTTCCACCTCCC
AGATGTGGAATATCCATGGATCATGCAATTATATGTCACATTATCGGGTTGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGTCTTGTCCATTGCTCTGGCCTTGCACAATGCATCAATGATTGAACTATATGTCCACACATTGGGCTCAACA
CCTTGATGCATCATTTCATGGAACAGATTGCATGCCTTGCCTGTTTCACCTTCCTTAAAGAAGCCA--
>chr1A_3
--GGCAACCTCAAAGACTCAAACATCCATTCTTCCAGGTCCAGTTTGCCCTGACATATAAAACAGATTTCTCAACATAGA
ATCAGTAACCTCAAATATCTGCGAGATTTACATTACTAAAAATGCATTCATATGAAGAAAAGTGAACACATTAGAGATTT
TACAAAATCTCAAGATTGTATACCTTTCCC-AAATCGCCATCAGAAGTCATTACCCCTAATATTCCATAGAAAATTTCTT
TGAATATGCTGTGCAAAAATCCATAAGATAAAACACAACAAATCAAACAAAGAATTCATATGCAAAA---TCCTTTAAAT
CAAAGAAGCTCCTATCT-TTTCCCGATCGCCATCAGAAGTA---ATTACCACTAAAATTGTAACCAGTCGTGTTAGACTA
TTTGCCTGCCTTTCCTCG-CCCATCCAAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCTGGACACACTGCAA
AATGAACTCAACCATACAAGTAGGAAGTTCGGATTTCTTATACAGTTGTTCTGGCAGGAGAGCTTTCGCAAGCAATAACA
TAAC--TGCTTTCTGAGGAGTTAGTCTCATATGCAGCA--------TATCAACTAATCAACCAAACCCATC--AAAAAAC
TGATACTTTGCAGGGAGCAACTTAATATCCTCCTGATGTTTCCCTTTCCTTGAAAAGAGAGACAACATCAATGAGGCAGT
TGAAGCTTCAAGTGAGATACTCTTCCCATCAACTTTAGACAAATAATTGCCAGCCTTGGCTATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGACGGGAACTGGGAACGATGCCACTGTTGTCTTTTGATGAAAACATATTGTCAGCA
TCTTCTACTGCTCCGCCTTTTAGAAGATTTCTTATCACTACTGCATAAGTAGATTCATTGGGCACCAACCCATTGGCTGA
TATTGTAGCAAACAATTCCTTTGCTTCTTCCTTTCTTTGAACCTTGTACATTGCATTAATCATGGTATTGAGTATTTCAA
TATTGAACTTCACATTCATTGCTCGCAATTTCTGGAACAGTGCAATCGCTTCATCTACACAATTATTTCTACAAAGACCT
CCAAGTTTTATATTGTATATGAGAATGTCCACTGTTGTTCCACTTTCAATCATCTCATGGAACATTTCCATTGCAGCGAC
AGTTCTCCCAGCACGAAACAACCCATCCAACATGATGCCATATGTAACAGTGTCAGGTTTAATTCTCTTACGCGGCATTT
CTCTAAACAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAGAATAGCCATCAAGAAGTGTACTATAAGTAACAACATTA
GGCTCAACACCAACTGATTCCATGACATCAAGTATTTTGAATGCTTTATCCATGTTCCCGACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATTAGGCCTCTCACCTATGCCTATAACCAAGTCTAAGACATCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAATTGAAGAACACAATGTTAGGCCGAGGAATACCACCGTTCATCATTTCA
AACATCAGCTCCTTAGCTTTAACCAAATCACCGTCTATGCAACAACCCTGAATCAGTGAGTGATAAACAGTTGTGTCCGG
CTGTACTTCCAAGGCAGTCATCTCATTGAATTTCTCAATAGCATCGGTCAGCTTGCCCATTCTGGAAAGTGCTGCTATTA
CAATGGAATAGGTGACTACATCTGGACTTACTCCTTGTCCCCGCATTTCAGTAAATATCAGCATAGCTTCTTCTGTCATT
CCACGTTTTGCATATCCATTAATTAATATGTTGAAAACATGGCAGTCAGCTGCAATACCGTTGCTTTCCATTGAATAAAA
GACATCAATCATATCAGCGAAGCATCCTTCAGTACCATACCCATGAAGCAAAATACAGTATGATACGATAT---CTGGTT
TGTGGCCCTTGGCAGTCATGGAATCAAGAAATTCTGCAGCTTCCTTGCTTCTCCCATGCTTGCAAAGGGAGGCCAGGAAC
GAGTTGCGAGTGACAATATCTAGTATAAGGCCCCGGCTTTTCATTTCTCTGAGCAATTTAGCAGCCTCTTTCCACCTCCC
AGATGTGGAATATCCATGGATCATGCAACTATATGTCACATTATTGGGTTGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGCCTTGTCCATTGCTCTGGCCTTGCACAATGCATCAATGATTGAACTATATGTCCACACATTGGGCTCAACA
CCTTGCTGCATCATTTCATGGAACAGATTGCATGCCTTGCCTATTTCACCTTCCTTAAAGAAGCCA--
>chr1B_3
--GGCAACCTCAAAGGCTCAAACATCCATTCTTCCAGGTCCAGTTTGCCCAGACATATAAAACAGATTTCTCAACATAGC
ATAAGTAACCTCAAACATCAGCAAGAATTACATTACTAAAAATGCATTCATATGAAGAAAAGTGAACGCATTAGAGATTT
TACAAAATCTCAAGATTGTATACCTTTCCC-AAATCGCCATCAGAAGTCATTACCCCTAATATTCCATAGAAAATTTCTT
TGAATATGCTGTGCAAAAATCCATAAGATAAAACGCAACAAATCAAACAAAGAATTCATATGCAAAA---TCCTTTAAAT
CAAAGAGGCTCCTATCT-TTTCCCAATCGCCATCAGAAGTA---ATTACCCCTAAAATTGTAACCAGACGCGTTAGACTA
ATTGTCTACCTTTCCTTG-CCCATCCAAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCTGGACACACTGCAA
AATGAACTCAACCATACAAGTAGAAAGTTCGGATTTCTTATACAGTTGTTCTGGCAGGAGAGCTTTCGGAAGCAATAACA
T-ACTGTGCTTTCCGAGGAGTTAGTCTCGTATGCAGCA--------TATCAACTAGTCAACCAAATCCATC--AAAAAAT
TGATACTTTGCAGGGAGCAACTTAATATCCTCCAGATGTTTCCCTTTCCTTGAAAAGAGAGACAACATCAATGAGGTAGT
TGAAGCTTCAAGTGAGATACTCTTCCCATCAACTTTAGACAAATAATTGCCAGCCTTGGCTATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGACGGGAACTAGGAACGATGCCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCCGCCTTTTAGAAGATTTCTTATCATTACTGCATAAGTATATTCATTGGGCACCAACCCATTGCCTGA
TATTGCAGCAAACAATTCCTTAGCTTCTTCTTTTCTTTGAACCTTGTACATTGCATCAATCATGGTATTGAATATTTCAA
TATTGAACTTCACATTCATTGCTCGCAATTTCTGGAACAGTGCAATCGCTTCGTCTACACAATTAGTTTGACAAAGACCT
CCAAGTATTATATTGTATGTGGAAATGCGCACTGTTGCTCCACTTTCAATCATCTCATGGAACATTTTCATTGCAGCAAC
AGTTCTCCCAGCATGAAACAACCCACCCAACATGATGCCATATGTAACAGTGTTAGGTTTAATTCTCTTGCGCGGCATTT
CTCTAAACAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAAAATAGCCATCAAGAAGTGCGCTATAAGTAACAACATCA
GACTCAACACCAACTGATTCCATGACATGAAGTATTTTGAATGCTTTATCCATCTTCCCAACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATTAGGCCTCTCACCGATGCCTATAGCCAAGTCAAAGACAGCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAACTGAAGAAAACAATGTTAGGACGAGGAATACCTTTGTTCATCATTTCA
AACATCAGCTCCTTAGCTTTAACCAAGCCACCATGCATAAAACAACCCTGAATTAGGGAGTGATAAACAGCTGTGTTTGG
CTGAATTCCCATGGCAATCATCTGATTAAATTTTTCCATAGAATCAGTCAACCTACCCATCCTGGAAAGTGCAGCTATTA
CAGTGGAATATGTGACTACATTGGGACTCACTCCTTTTTCCCACATTTCTGTAAATATCAGCATAGCTTCATCCGTCATT
CCACGTTTAGCATATCCATTAATTAATATGTTGAAAACACGGCAGTTGGCAGCAATACCGTTTCTTTCCATTGAATTAAA
GAGATCAATCATATCAGCAAAGCATTCTTCATTGGCATACCCATGAAGCAAAATATAGTAGGAGATGACAT---CT---C
TGTGCCCTTTGGCAGTCATGGCATCAAAAAATTCTGCACCTTCTTTGCTTCTTCCATGCTTACAAAGGTAAGTCATTAAG
GAGTTGCAAGTAAAATTATCTGGTATAAGGCCCCGGCTTTTCATTTCTCTAAACAATTTAACAGCCTCTTTCCACCGCCC
AGATGTGGAATATCCATGGATCATGCAATTATATGTCACATTATCGGGTTGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGCCTTGTCCATTGCTCTGGCCTTGCACAATGCATCAATGATTGAACTATATGTCCACACATTGGGCTCAACA
CCTTGCTGCATCATTTCATGGAACAGATTGCATGCCTTGCCTGTTTCACCTTCCTTAAAGAAGCCA--
>chr1A_208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATTACGCCTAATATTCCATAGAAAATTTCTT
TGAATATGCTGTGCAAAAATCCATAAGATAAAACGCAACAAATCAAACAAAGAATTCATATGCAAAAAAATCCTTTAAAT
CAAAGAGGCTTCTATATTTTCC-CAATCACCATCAGAAGTA---ATTACCACTAAAATTGTAACCAGTCGCGTTAGACTA
ATTGCCTACCTTTCCTCG-CCCATCCAAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCTGGACACACTGCAA
AATGAACTCAACCATACAAGTAGGAAGTTCGGATTTCTTATACAGTTGTTCTGGCAGGAGAGCTTTCGCAAGCAATAACA
TAAC--TGCTTTCTGAGGAGTTAGTCTCATATGCAGCA--------TATCAACTAGTCAACCAAATCCATC--AAAAAAT
TGATACTTTGCAGGGAGCAACTTAATATCCACCTGATGTTTCCCTTTCC---------GAGACAACAACAATGAGGTAGT
TGAAGCTTCAAGTGAGATACTCTTCCCGTCAACTTTAGACAAATAATTGCCAGCCTTGGCTATCTCACCTTTTTTCAACA
ACATTCTGATGATATCATTTATAAGACGGGAACTGGGAACGATGCCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCCGCCTTTTAGAAGATTTCTTATCATTACTGCATAAGTAGATTCATTGGGCACCAACCCATTGGCTGA
TATTGTAGCAAACAATTCCTTTGCTTCTTCCTTTCTTTGAACCTTGTACATTGCATTAATCATGGTATTGAGTATTTCAA
TATTGAACTTCACATTCATTGCTCGCAATTTCTGGAACAGTGCAATCGCTTCATCTACACAATTATTTCTACAAAGACCT
CCAAGTATTATATTGTATATGAAAATGTCCACTGTTGTTCCACTCTCAGTCATCTCATGGAACATTTCCATTGCAGCGAC
AGTTCTCCCAGCACGAAACAACCCATCCAACATGATGCCATATGTAACAGTGTCAGGTTTAATTCTCTTACGCGGCATTT
CTCTAAACAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAGAATAGCCATCAAGAAGTGCACTATAAGTAACAACATTA
GGCTCAACACCAACTGATTCCATGACATCAAGTATTTTGAATGCTTTATCCATGTTGCCGACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATTAGGCCTCTCACCTATGCCTATAACCAAGTCTAAGACATCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAACTGAAGAACACAATGTTAGGCCGAGGAATACCACCGTTCATCATTTCA
AACATCAGCTCCTTAGCTTTAACCAAATAACCGTCTATGCAACAACCCTGAATCAGTGAGTGATAAACAGTTGTGTCCGG
CTGTACTTCCAAGGCAGTCATCTCATTGAATTTCTCGATAGCATCGGTCAGCCTACCCATTCTGGAAAGTGCGGCTATTA
CAATGGAATAGGTGACTACATCTGGACTCACTCCCTGTCCCTGCATTTCAGTAAATATCAGCATAGCTTCTTCTGTCATT
CCACGTTTTGCATATCCATTAATTAATATGTTGAAAACATGGCAGTCAGCTGCAATACCGTTGCTTTCCATTGAATAAAA
GACATCAATCATATCAGCGAAGCATCCTTCAGTACCATACCCATGAAGCAAAATACGGTATGATACGATAT---CTGGTT
TGTGGCCCTTGGCAGTCATGGAATCAAGAAATTCTGCAGCTTCCTTGCTTCTCCCATGCTTGCAAAGGGAGGCCAGGAAC
GAGTTGCAAGTGACAATATCTGGTATAAGGCCCCGGCTTTTCATTTCTCTGAGCAATTTAGCAGCCTCTTTCCACTGCCC
AGATGTGGAATATCCATGGATCATGCAATTATATGTGACATTATTGGGTTGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGCCTTGTCCATTGCTCTGGCCTTGCACAATGCATCAATGATTGAACTATATGTCCACACACTGGGTTCAACA
CCTTGCTGCATCATTTCATGGAACAGATTGCATGCCTTGCCTGTTTCGCTTTCCTTAAAGAAGCCA--
>chr1A_328
TATCTTTCCCAATAGCCATCAGAAGTAATTACCCCTAAAATTACAGGTGGCTAGTAGAAAAAGATTGTGTACC-------
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------------------TTTCCCAATCGCCATCAGAAGTA---ATTACTCCTAAAATTGTAACCAATCGTGTTAGACTA
ATTGTCTACCTTTCCTCG-CCCATCAAAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCCGCACACACCACAA
AATGAACTCA-CTATACAAGTAGGCAGTTTGG-TTTCTTATACAGTTGTTCTGGCAGGAGAGCTTTCGCAAGCAATAACA
TAACTGTGCTTTCCGAGGAGTTAGTCTCATATGCAGCA--------TATCAACTAGTCAACCAAACCCATC--GAAAAAT
TGATACTTTGCAGGGAGCAACTTAATATCCTCCTGATGTTTCCCTTTCCTTGAAAAGAGAGACAACATCAATGAGGCAGT
TGAAGCTTCAAGTGAGATACTCTTCCCATCAACTTTAGACAAATAATTTCCAGCCTTGGCTATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGAAGGGAACTGGGAACGATACCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCCGTCTTTTAGAAGATTTTTTATCATTACCTTATAAGTAGATTCATTGGGCACCAAGCCACTGTGTGA
TATTGCAGCAAACAAATCCTTAGCTTCTTCTCTTCTCCCAACCTTGTACATTGCATTAATCATGGTATTGAGTATTGCAA
TATCAAACTTTACATTCATTGTTCCTAATTTCTGGAACAGGGTGATAGCTTCGTCTGCACAATTATTTCTACAAAGACCT
CTAAGTATTATACTGTATGTAGAAATACTCACTGTTATTCCATTTTCCGTCATCTCATGGAACATTTTTCTTGCGGCAAC
AGTTCTCCCAGCACGAAACAACCCATTCATTATTATGCAATATGAAACAGTGTCAGGTTTAATTCTCTTACGCGGCATCT
CTCTGAACAGAGTCAAACTATCATCGATCCTTCCATTTCTACAATAGCCATTAACAAGTGTATTGTATGTAATAACATTA
GGCTCAACACCAACTGATTCCATGACATCAAGTACTTTTAATGCTTTATCCATATTGCCGACTAAGCAATATCCGTCAAT
CAGTGAACTGAATGTAATGGCATCAGGCCTCTCACCTATGTCTATAACCAAGTCAAAGATATCGTGTGCATCCATAATCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAATTGAAGAACACAATGCTAGGACGAGGAATACCTTTGTTCATCATTTCA
CAAACCAGCTCCTTGGCTTTAACCAAATCACCATGTATACAACAACCCTGAATCAGGGAGTGATAAACAGTTGTGTCCGG
TTAAACTCCCATGGCAATCATCTGACTGAACTTGCCCATAGCATCGGTCAACCTACCCATTCTGGAAAGTGCGGCTATTA
CAGTGGAATAGGTGAACGCATCAGGACCTACTCCTTTTTCCCGCATTTCCGTAAATATGAGCATAGCTTCATCCGTCATT
CCATGTTTAGCATACGCATCGATTAATATGTTGAAAACACGGCAGTCGGCTGCAATGCCATTCCTTTCCATTGAATTAAA
GAGGTCAATCATATCAGCAAAGCATCCTTCATTGGCATACCCATGAAGCAAAATAGAGTATGAGACGACAT---TAGCTC
TGTGGCCTTTGGCAGTCATGGAATCAAATATTTGTCTAGCTTCTTTGCTTCTTCCATGCTTGCAAAGGGAAGTCATTAAC
GAGCTGCAAGTAAAGTTATCTGGTATAAGACCCTGACTTGTCATTTCTC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr1D_332
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTCCCAATCGCCATCAGAAGTA---ATTAC-CCTAAAAATGTAACCAGTCGCGTTAGACTA
ATTGTTTACTTTTCCTCG-CCCATCCGAGATTAAAAGATTCATAGACATGTCACTTTCATGTGATCCGGACACACCGCAA
AGTGAACTCAACTATACAAGTAGGCAGTTTGGATATCTTATACAGTTGTTCTGGCAGGAGAGCTTTCGCAAGCAATAACA
TAACTGTGCTTTCCGAGGAGTTAATCTCATATGCAGCA--------TATCAACTAGTCAACCAAATCCATC--AAAAAAT
TGATACTTTGCAGGGAGCAACTTAATATCCTCCTGATGTTTCCCTTTCCTTGAAAAGAGAGACAACATCAATGAGGCAGT
TGAAGCTTCAAGTGAGATACTCTTCCCATCAACTTTAGACAAATAATTTCCAGCCTTGGCTATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGACGGGAACTGGGAACGATACCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCTGTCTTTTAGAAGAATTTTTATCATTACTGCATAAGTAGATTCATTGGGCACCAAGCTACTGGGTGA
TATTGCAGCAAACAAATCCTTAGCTTCTTCTCTTCTCCCAACCTTGTACATTGCATTAATCATGGTATTGAGTATTGCAA
TATCAAACTTCACATTCATTGTTCCTAATTTCTGGAACAGGGTGATAGCTTCGTCTGCACAATTATTTCTACAAAGACCT
CCAAGTATTATACTGTATGTGGAAATACTCACTGTTATTCCACTTTCCGTCATCTCATGGAACATTTTCCTAGCAGCAAC
AGTGCTCCCAGAACGAAACAACCCATCCAGTATGATGCCATATGTTACAGTGTCAGGTTTAATTCTCTTATGCGGCATTT
CTCTAAACAGGGTCAAACCATCATCGATCCTTCCGTTTGTACAGTAGCCATTAACAAGTGTATTATATGTAACCACATTA
GGCTCAATGCCAAATGATACCATGGAATCAAGCACTCTGAGTGCTTTATCCATCTTATCAACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATCAGGCCTCTCACCCATGTCTATAACAAGGTCAAAGATATCATGTGCATCCATAACCC
TGCCTTCTTTGCATAAATAGTTTATCACTGAACTGAAGAACGCAATGCTAGGACGAGGAATACCTTTGTTCATCATTTCA
GAAACCAGCTCCTTGGCTTTAACCAAATCACCATGTATACAACAACCCTGAATCAGGGAGTGATAAACAGCTGTGTCCGG
TTGAACTCCCATGGCAATCATCTGACTTAACTTGCCCATAGCATCGGTCAACCTACCCATTCTGGAAAGTGCGGCTATTA
CAGTGGAATAGGTGAACGCATCGGGACCTACTCCTTTTTCCCGCATTTCCGTAAATATGAGCATAGCTTCATCCGTCATT
CCATGTTTAGCATACGCATCGATTAATATGTTGAAAACAC-GCAGTCGGCTGCAATGCCATTCCTTTCCATTGCATTAAA
GAGGTCAATCATATCAGCAAAGCATCCTTCAGTAGCATACCCATGAAGCAAAATACGGTATGAGACGATAT---CCGGTT
TGTGGCCCTTGGCGGTCATGGAATCAAAAAATTCTGCAGCTTCTTTGCTTCTTCCATGCTTGCAAAGGGAGGACAGGAAG
GAGTTGCAAGTAACAATATCTGGCATAAGACCCCGGCTTTTCATTTCTCTGAACATTTTAGCAGACTCTTTCAACCGCCC
AGATGTGGCATATCCATTGATCATGCAATTATATGTCACTGTATCGGGTTGAGCACCATTAGCAACCATCTGCCGAAGGA
CTAGCTCTGCCCTGTCCATTGCTCTGGCCTTGCACAACGCATCAATGATCGAGCTATATGTCACCACACTGGGCACAATC
CCTTGCTGCATCATTTCATGGAATAGACTGCATGCCTTCCCTGCTTCACCCTCCTGAAAAAAGCCA--
>chr1B_333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTC-CGATGGCCATCCGAAGCAATTATTACCCCTAAAATTGTAACCAGTCGCGTTACACTA
ATTGTCTACCTTTCCTCG-CACATCCAAGATGAAAAGATTCATAGACATGTCACTTTCATGTGATCCGGACACACCGGAA
AATGAACTCAACTATAAAAGTAGGCAATTTGG-TT----------TTGTTCTGGAAGGAGAGCTTTCGCAAGCAATAACA
GAACTGTGCTTTC-GAGGAGTTAGTCTCATATACAGCA--------TATCAACTAGTCAACCAAATCCATCGAAAAAAAT
TGATACTTTGCTGGGAGCAACTTAATATCCTCCTGATGTTTCCCTTTCCTTGAAAAGAGGGACAACATCAATGAGGTAGT
TGAAGCTTCAAGTGAGATACTCTTCCCATTAACTTTAGACAAATAATTTCCAGCCTTGGCTATCTCACCTTTTTCCAACA
ACATTCTGATGATATCATTTATAAGACGGGAACTGGGAATGATACCACTGTTGTCCATTGATGAAAACATATTGTCAGCA
TCTTCCACTGCTCCATCTTTTAGAAGATTTATTATCATTATGCTGTAAGTAGAAGCATTGGGTATCAAGCCACTGGGTGA
TATTGCAGCAAGCAAATCCTTAGCTTCTTCTCTTCTCCCAACCTTGTACATTGCATTAATCATGGTATTAAGTATTGCAA
TATCAAACTTCACATTCATTGCACCTAATTTCTGGAACAGAGCGATAGCTTCATCCGCACAAGTA--TCTACAAAGACCA
CCAAGTATTATAGTGTATGTGGAAATACTCACTGTTATTCCACTTTCGATCATCTCATGGAACATTTTCCTTGCAGTAAC
AGTGCTCCCAGAACGAAACAACCCATCCAGTATGATGTCATATGTTACAGTGTTAGGTTTAATTCTCTTATGCGGCATTT
CTCTAAACAGAGCCAAACCATCATCGATCCTTTCGTTTGTACAATAGCCATTAACAAGTGTATTATATGTAACAACATCA
GGCTCAACACCAACTACTTCCATGACATCAAGTACTTTGAATGCTTTATCCATCTTCCCAACTAAGCAATATCCGTCAAT
CAGTGAATTAAATGTAATGACATCAGGCCTCTCACCTATGCCTATAACCAAGTCTAAGACATCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAATTGAAGAACACAATGTTAGGCCGAGGAATACCTCTGTTCATCATTTCA
GAAACCAGCTG--TGGCTTTAACCAAGCCACCATGCATAAAACAACCCTGAATTAGGGAGCGATAAACAGGTCTGTCCGG
CTGTACTCCCATAGCAATCATCTCACCAAATTTGCCAATTGCATCAGCCAGCCTACCCACTCTACAAAGTGCGACTATTA
CAGTTGAATATGTGAACGCATCAGGACTCACTCCTTGTCGCCGCATTTGAGTAAATTTGAGCATAGCTTCATCCATTAAT
TCACATTTAGCATACGCACCGATTAATATGCTGAAAACATGGCAGTCGGCTGCAATGCCGTTCCTTTCCATTGAATTAAA
GAGATCAATCATATCAGCAAAGCATCCTTCATTGGCATACCCATGAAGCAAAATACTGTATGAGACGATAT---CCGGCT
TGTGGCCTTTGGCAGTCATGGCATCAGAAATTTCTGCAGCTTCTTTGCTTCTTCCATGCTTACAAAGGTAAGTCATTAAG
GCGTTGCAAGTAAAAGTATCTGGTATAAGGCCCCGGCTTTTCATTTCTCTAAACAATTTAGCAGCCTCTTTCCACCTCCC
AGATGTGGAATATCCATGGATCATGCAATTATATGTGACATTATTGGGTTGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGCCTTGTCCATTGCTCTTGCCTTGCACAATGCATCAATGATTGAACTATATGTCCACACACTGGGCTCGACA
CCTTGCTGCATCATTTCATGGAACAGATTGCATGCCTTGCCTGTTTCGCCTTCCTAAGAAGCCA----
>chr1A_538
CAAGC---------------------------------------------------------------------------
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----------------------------------------------------------------------------AATA
AAACTGTGCTTTCTGAGGAATTAGTCTCATATGCAACG--------TATCAACTAGTCAACCAACT-CATC--GAAAAAT
TGATACTTGGCAGGGAGCAATTTCATGTGCTCCTTATATTTGCCTTTCATTGAGAAGAGAGAAAACATCAATGAAGTAGT
TGAAGCTTCAAGTGATATGCTCTTCCCATCAACTTTAGACAAATAATATCCGGCCTTGGCGATCTCACCTTTTTCCAACA
ACAATCTGATGATGTCATTGATGAGACGGGAGCTGGGGACTATACCACTCTTGTCCATTGATGAAAACACATTGTTAGCA
TCTTCCACTACTCCATCTTTTAGAAGATTTTTTATCATTACTCCGTAAGTAGATTCATTAGGCACCAACCCACGGGCTAA
TATTCCAGCAAATAGTTCCTTAGCTTCTTCTCTTCTCCCAACCTTGTACATTGCATTGATCATGGTATTGACTATTGCAA
TATTGAACTTCACATTCATTGCACCTAATTTGTGGAACAGGGTGATAGCTTCGTCTGCGCAATTATTTCTACAAAAACCT
CCAAGTATTATAGCGTATATGGAAAAGGTCACTGTTGTTCCACTTTCGATCATCTCATGGAACATTTTCCATGCAGCAAC
AGTTCTCCCAGAACGAAACAACCCATCCAGTATGATGCCATATGTAACAGTGTCAGGTTTAATTCTCTTTCGCGGCATTT
CTCTGAACAGAGTCAAACCATCGTCTATCCTTCCATTTTTAAAATAGCCATCAAGCAGTGTACTGTAAGTAACAATATCA
GGCTCAACACCAACTGATTCCATGGCATTAAGCATTCCGAATGCTTTATCCATCTTGCCGACTAAGCAATATCCGTCAAT
CAGTGAACTAAATGTAATGGTATCAGGCCTCTCACCTATGTCTATAACCAAGTCAAAGATATCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAATTGAAGAACACAATGTTAGGACAAGGAATACCTTTGTTCATCATTTCA
GAAACCAGCTCCTTGGCTTTAACCAAATCACCATCGATGCAAAAACCCTGAATCAGGGACTGATAAACAGGTATGCTTGG
CTGTACTCCCATTGCAATCATCTCATCAAATTTGTCCACAGCATCGGTCAACCTACCCATTCTGGAAAGTGCGGCTATTA
CAGTGGTATAGGTGACTACATCAGGACTCACTCCTTTTTCCCGCATTTCAGT-AATATCAGCACAGCTTCATCCATCATT
CCACGTTTAGCATATCCATTAATTAATATGTTGAAAACATGGCAGTCGGCTGCAATACCGTTGCTTTTCATTGAATTAAA
GAGATCAATCATATCAGCAAAGCATCCTTCATTGGCATACCCATGAAGCAAAATAGAGTATGAGACGACATTAGCT---C
TGTGGCCTTTGGCAGTCATGGAATCAAATATTTGTCTAGCTTCTTTGCTTCTTCCATGCTTGCAAAGGGAAGTCATTAAC
GAGCCGCAGGTAACAATATTTGGTGTAACACCCCGGCTTTTCATTTCTCTGAACATTTTAGCAGCCTCTTTCAACCGCCC
AGATGTGGCATATCCATTGATCATGCAATTATATGTCACTGTATCGGGTTGAGCACCTTTAGCAACCATCTGACGAAGGA
CTAGCTCTGCCTTGTCCATTGCTCTGGCCTTGCACAATGCATCAATAATCGAGTTATACGTCCACACATCGGGCTCAATC
CCTTGCTGCATCATTTCATGGAACAGACTGCATGCCTTGCCTATTTCACCTTCCTTAAAGAAGCCA--
>chr1D_767
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-------------------------------------------------------------------CCTTTTTCCAACA
ACAATTTGATGATGTCATTGATGAGACGGGAGCTGGGGACTATACCACTCTTGTCCATTGATGAAAACACATTGTTAGCA
TCTTCCACTGCTCCATCTTTTAGAAGATTTTTTATCATTACTCCGTAAGTAGATTCATTAGGCACCAACCCACGGGCTAA
TATTCCAGCAAATAGTTCCTTAGCTTCTTCTCTTCTCCCAACCTTGTACATTGCATTGATCATGGTATTGACTATTGCAA
TATTGAACTTCACATTCATTGCACCTAATTTGTGGAACAGGGTGATAGCTTCGTCTGCACAATTATTTCTACAAAAACCT
CCAAGTATTATAGCGTATGTGGAAATGTCCACCGTTGTTCCACTCTCGTTCATCTCATGGAACATTTTCTTTGCGGCAAC
AGTTCTCCCAGCACGAAACAACCCATCCAACATGATGCCATATGTAACAGTGCCAGGTTTAATTCTCTTACGCGGCATTT
CTCTAAACAAAGTCAAAGCATCATCAATCCTTCTGTTTTTAAAATAGCCATCAAGCAGTGTATTGTAAGTAACAATATCA
GGCTCAACACCAACTGATTCCATGGCATCAAGTATTTTGAATGCTTTATCCGTCTTCCCGACTAAGCAATATCCGTCAAT
CAGTGAACTAAATGTAATGGTATCAGGCCTCTCACCTATGCCTATAACCAAGTCTAAGACATCATGTGCATCCATAACCC
TTCCTTCTTTGCACAGACTGTTTATTACTGAATTGAAGAACACAATGGTAGGCCGAAGAATACCACCGTTCATCATTTCA
AGCATCAGCTCCTTAGCTTTAACCAAATCACCGTCTATGCAACAACCCTGAATCAGTGAGTGATAAACAGTTGTGTCCGG
ATGTACTTCCAAGGCAGTCATCTCATCGAATTTCTCAATAGCATCGGTCAGCCTACCCATTCTGGAAAGTGCGGCTATTA
CAATGGAATAGGTGACTACATCTGGACTCACTCCTTGTCCCCGCATTTCAGTAAATATCAGCATAGCTTCTTCTGTCATT
CCACGTTTTGCATATCCACTAATTAATATGTTGAAAACATGGCAGTCAGCTGCAATACCGTTGCTTTCCATTGAATTAAA
GAGATCAATCATATCAGCGAAGCATCCTTCACTGGCATACCCATGAAACAAAATACGGTATGATACGATAT---CTGGTT
TGTGGCCCTTGGCAGTCATGGAATCAAGAAATTCTGCAGCTTCCTTGCTTCTCCCATGCTTGCAAAGGGAGGCCAGGAAC
GAGTTGCGAGTGACAATATCTGGTATAAGGTCCTGGCTTTTCATTTCTCTAAGCAATTTAGCAGCCTCTTTCCACTGCCC
AGATGTGGAATATCCATGGATCATGCAATTATATGTCACATTATTGGGTAGAACACCTTTGTTAACCATCTGCTGAAGCA
CTAGCTCTGCCTTGTCCATTGCTCTGGCCTTGCACAGTGCATCAATGATTGAGCTATATGTCCACACACTGGGTTCAACA
CCTTGGTGCATCATTTCATGGAACAGATTGCATGCCTTGCCTGTTTCACCTTCCTTAAAAAAGCCA--
>SNPs
----------------------------------------------------------S--------S------------
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---------S--------S--------S--------------------------------S-------------------
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----------------S---------------------------------------------------------------
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---------S-------------------------------------------------S--S---S-------------
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------------------S-------------------------------------------------------------
---------------------------S----------------------------------------------------
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S-------S---------------S------------------S---------------------------------S--
----S--------------------------------------------------------S------------------
--S-----------------------------------------------------------------------------
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-------------------S------------------------------------------------------------
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------------------------------------------------------------------------S-------
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------------------------------------------------------------------SS
>forward_490
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---------------------------------------------------------------------ACACACCGCAA
AATGAACTCG----------------------------------------------------------------------
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>reverse_2153
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------------------------------------------------------------------------GACTGCCC
AGATGTGGAATATC------------------------------------------------------------------
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--------------------------------------------------------------------
