>input_sequence_82556
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-----------------------------------------------------ATGTCGCTCGTCACAGCTTTTCTGGCG
GGCTCAGCGGCGCCGGCGGTCGCGCCACGGTCCGCCCGCCCGTCGGTGGGCTTCTTTGGGGTCGGCGGAGGGTGCGCGCT
GTCGGTGGAGTGCTCGTCGCGGCCGCAGAAGAAAGGGACCAAGCACCATATGAAGACGCGGCCCAAGAAGACGCAGCGGT
GGGACATCAAGCGCCGCCCCATTCAGTACGAGCCGCTGCCGGCGCTTCCCGATGACTGGACGCTCGTCGCCGCCGGTGAG
AAGGAAGATGCGGCGCCGCAGGACGAGGAGACCACGCCCGCTGCTGCCGTTGAGGTCGAGGTGGTCGCCGCCCCTGCCGC
CCCTGCCGCCGCAGACTGA-------------------------------------------------------------
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>chr7B_1_TraesCS7B01G164300
GCAGACCTGGCGCAAGCACTATGAGAACAAGGAACTGGTCCACAAAGCCGACGATTCTCACACAAACCTCGGCTTCGAAG
ACTAGTTCGGGGGCTACTGAGGGTGTCCCACACGAAAGGGTCCTCGTGCTGCCGGTCTATCTCTCGTCGGCCGGACAGTT
GAGCCACTCTCA--------TTGGAAGGCCGAAGCTATGCATGACTCCGTGTTCAGGAAGAAAACCTCCGAAGCTTTGGT
GTGTCCTCCAAGTCAAGATAATGAAGACGACATGTTTATCCCCTGGTGGTAACCAACCAGGTGTAACCTTAGGGACCCCT
GGTGTCTATATAAACCAGAGGGTTTAGTCTGTAGAGGGAAGAACCATCATCCTACTCATCTAGGGTTTTGCTCACCTGAT
CTCGAGCTAGATCAACTCTGGAACCATCATATGCACACA--TCAATATAATCAAGGAGGACATAGGGTTTTACCTCTTTC
AGAGGGCCCGAACCTTGGTAAACATCGTCTCTACGCCCCTTGTTACCCATCGATCCAAGATCTACAGCTCGGGACCCCC-
TATCCGAGATCCACCGATTTTGACACCGACAATGACCCCGGACGCACACCCGCGGTCCACCTGTCATGAACCATCCAATT
AGGTCGCCCGAGTTTGAGTCGTTCAGGCAGATCGGACGGCTCGGAGAGCTCGAGATGCCGCAAGCCAGCCGGAATCGGAC
GGCGC-GAGGCTCTCACAGCTTGCGAGCAGCCTAGGAAGGCGGGTACTCCAACATTCTTTGTAGAAGTAATGATTATAGC
CTTCATTTATCATTATCTTTAGTGCAGGGGAAACTTGGACGGCAGGATTTCATACGTTCCAAGATGGACCGTCAGATTTT
GCTCGGCACCTGGGAACCCCGGATGTATATACAAAGCCCAATCCAATCCAAAGCCACCCTCCGTCCTTTCTTATCCCAAA
CACAAC-ACTCGTGTAGCTCTCCCCTGGTCTAAGCAGAGGCATTTCAACGAACATGTCGCTCGTCACAGCTTTTCTGGCG
GGCTCAGCGGCGCCGGCGGTCGCGCCACGGTCCGCCCGCCCGTCGGTGGGCTTCTTTGGGGTCGGCGGAGGGTGCGCGCT
GTCGGTGGAGTGCTCGTCGCGGCCGCAGAAGAAAGGGACCAAGCACCATATGAAGACGCGGCCCAAGAAGACGCAGCGGT
GGGACATCAAGCGCCGCCCCATTCAGTACGAGCCGCTGCCGGCGCTTCCCGATGACTGGACGCTCGTCGCCGCCGGTGAG
AAGGAAGATGCGGCGCCGCAGGACGAGGAGACCACGCCCGCTGCTGCCGTTGAGGTCGAGGTGGTCGCCGCCCCTGCCGC
CCCTGCCGCCGCAGACTGACGCCGTGAAGTCCACTGTGTCCTCTCTGTATTTTATTTCCTTCAACTCTCCGCACGCATGG
TTTTTGCTTGAGATTATTAACCAA--TGCTACACTTTGCAATTACAACCCTGAATTCTACTTCAGTGGCCACTGCACCTT
TAGATTTTAGTGGTTGCTTTGCTCGATGATTTATGGTTCATGGTTCACGTTGTGTGCAATTCGATTTTACCCTGTGTTTC
TCGGTTCGGCCATGGGTTGGTGATAGGTTCAAGCTGTCAAATCATTACAAAGGGGGCAACAGGA------ATGTGGCTAC
GATAAAATGCTGGTGGGTAAACTCTCTTGAAGTTTGATCATTTTTTATGACCCTGA------------------------
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--CTGGAGATACTGGGTATAAGAAGTACATTT-------GTGATCACATTGCTGTCAAAGCTAAAA--TACCTTCGCGCC
TGTCTCGTGCCTAGTGATGATTTGCTTCCCAGCAGTTATGTCAGAGGAATTGATCAGCCCTTGAAGGAATTTTGCTTGAC
AACTTACAAGAGCTATGTACAGAAAAATTATGTTCATGATTTGGATGAGCATGGTGTGAAAGTGCCCAGA-GGGATTGGG
AGAATGAAGGCCCTGCACACACTTGGTGTTGTCAACACTGCACGGGGGAAGGCCATTCTGAAGG--ATCTGTGTGAGCTT
AACTCAGTTGCGTAAGCTTGGAACAGAGTGACTGGCATCAACAAGAGAAACTGCAAGGAGCTGTGCTCTGATATCATCGA
TCATGTACGCTTGCTGTCCTTGTCGATGTGCTCTGAGGGTGAGCCTGGGTTAGAACTTAGAAGGATGTCTAGATAAATTG
TCCCCATCTCCAGATGGCCTTCATATTCATAGCCTTAAGT--TGTATGGCTATCTGGTCAAATTGCCTACATGGATTGAA
TAGCTACAGATGCTAGCCAAGTTAACTCTACGGAGTACCCAAGTGAAGCATGCTGACATA---CTTGTAGCACTGGGGAA
GCTGACAAAACTTGCCATTCTACGTCTTCA
>chr7D_1
GCAGACCTGGCGCAAGCACTATGAGAAGAAGGAACGGGTCCACAAAGCCGACGATTCTCACACAAACCTCGACTTCAAAG
ACAAGTTTGGGGGCTACTTAGGGTGTCCCAGACGAAGGGGTCCTCGGGCTGCCGGTCTATCTCTCGTGGGCCGGACAGTT
GAGCCACTCTTA--------TTGGAAGGCCGAAGCTATGTTTGACTCCGTGTTCAGGAAGAGAACCTTCGAAGCTTTGGT
GTGTGCTCCAA-TCAAGATAATGAAGTCGGCATGTTTATCCCCTGATGGTAACTGACCATGTGTAACCTCAGGGACCCCT
GGTGTCTATATAAACTAGAGGGTTTAGTCTGTAGAGAGAAGAACCATCATCCTACTCATCTAGGGTTTTGTTCACCTGAT
CTCGAGGTAGATCAACTCTGTAACCATCATATACACACA--TCAATATAATCAAGCAGGACGTAAGGTTTCACCTCTTCG
AGAGGGCCCGAACCTGAATAAACACCGTCTCTACGCCCCTTGTTACCCACCGGTTCAAGATCTACAGCTCGGGACCA-C-
TACCCGAGATCCGCCGG---------------------------------------------------------------
------------------------------------------------CTCAAGAAGCTGCAAGCCAGCCGGAATCGGGC
GGCATGGAGGCTCTTACAGCCTGCGAGGCGCCTAGGAAGGCAGGTACTCTAACATTCTTTGTAGAAGTAATGATTATAGC
CTTCATTTATCATTATCATTAGTGCAGGGGAAACTTGGACGGTGGGATTTCATACGTTCCAAGATGGACCGTCAGATTTT
GCTCGGCACTTGGGAACCCCGGATGTGTATACAAACG-CAATCCAATCCAAAGCCACCCTCCGTCCTTTCTTATCCCAAA
CACAACAACTCGTGCAGCTCTCCCCTGGTCGAAGCAGAGGCATTTCGACGAACATGTCGCTCGTCACAGCTTTTCTGGCG
GGCTCGGCGGCGCCGGCGGTCGCGCCACGGTCCGCTCGCCCGTCGGCGGGCTTCTTTGGGGTCGGCGGAGGGTGCGCGCT
GTCAGTGGAGTGCTCGTCGCGGCCGCAGAAGAAAGGGACCAAGCACCATATGAAGACGCGGCCCAAGAAAACGCAGCGGT
GGGACATCAAGCGCCGCCCCATTCAGTACGAGCCGCTGCCGGCGCTTCCCGATGACTGGACGCTCGTCGCCGCCGGTGAG
AAGGAAGATGAGGCGCTGCAGGATGAGGAGACCACGCCCGCTGCCGCCGTTGAGTTCGAGGTGGTC---------GCCGC
CCCTGCCGCCGCAGACTGACGCCGTGAAGTCCACCGTTGCCTCTCTGTATTTTATTTCCTTGAACTCTCCGCACGCATGG
TTTTTGCTTGAGATTATTATAACCGCTGCTACACTTTGCAATTACAATCGTGAAGTCTACTTCAGTGGCCACTGCACCTT
TAGA-TTTAGTGGTTGCTTTGCTCGATGATTTATGCT------TTCACGTTGTGTGCAATTCGATTTTACCCAGTGTTTC
TCGGTTCGGCCATGGGTTGGTGATAGGTTCAAGCTGTCAAAGCATTACAAAGGGGC-------AGCAGGAATGTGGCTAC
AACAAAATGCTGGTGGGTAAACTCTCTTGAAGTTTGATCGTTTTGGATGACCCTAGTGCTGCCTACTCCCTAGATACATC
CGTTTGTTTGAGTGTCAATTAATATGGGACGGAGGTAGTACTGTATATACCATCTCCCAGATTGATTTTTGGTCTGTCAG
AGCTGGAGACACTGGGTATAGGAAGTACATTT-------GTGATCACATTGCTGTCAAAGCTAAAAAATACCTTCACGCC
TGTCTCGTGCCTACTGATGATTTGCTTCCCAGCAGTTATGTCAGATGAATTGATCAGCCCTTGAAGGAATTTTGCTTGAC
AACTTACAAGAGCTATGTACAGAAAAGGTATATTCATGATTTGGATGAGCATGGTGTGAAAGTGCCCAGA-GG-ATTGGG
AGAATGAAGGCCCTGCACACACTTGGTGTTGTGAACACTGCACGGGGGAAGGCCATTTTGAAGGGGATCTGGGTGAGCTT
-ACTCAGTTGCGTAAGCTTGGAACGGAGTGACTGGCATCAACAAGAGAAACTGCAAGGAGCTCTGTTCTGATATCATCGA
TCATGTCCGCTTGCTGTCCTTGTCGATGTGCTC--AGGGTGAACCTGGGTTAGAACTT----GGACGTCTAGATAAATTG
TCCCCACCTCAAGATGGCCTTCATATTCATAGCCTTAAGT--TGTATGGCTATCTGGTCAAATTGCCTACATGGATTGAA
TAGCTACAGATGCTAGCCAAGTTAACTCAACGGAGTACCCAAGTGAAGCATGCTGACATAGTACACGTAGCACTGGGGAA
GCTGACCAAACTTGCCATTCTACGTCTTCA
>chr6D_1
GCAGACCTGGTGCAAGCACCATGGGAAGAAGGAACTGGTCCACAAAGCCGATGATTCCCACACAAACTTTGGCTTCGAAG
ACTAGTTCGAGGGCTACTGAGGGTGTCCCGGATTAACGAGTCCTCGGGCCGCCGGTCTATGTCTTATGGGCCGGATAGTT
GAGCCACTATTA--------TTGGAAGGCCGAG-CTATAAGCGACTCCGTGTTCAAGAAGGAAACCCCCGAAGCCTTGGT
GTGTCCTCCAAGTCAAGATGGTATAATTGGCATGTTTATTCCCTGATGGCAACCGACCATGTGTAACCCTAGGTACCCCT
GGTGTCTATATAAACCAGAGGGTTTAGTCCATAGAGGCAAGAACCATCATCCTACTCATGTAGGGTTTAGTTCACCCGAT
CTCGTGGTAGATCAACTCTGTAACCATCATAT--ACACA--TCAATATAATCAAGCAGGACATAGGGTTTTACCTCTTCG
AGAGGGCCCGAACCTGGGTAAATATTTTCCCCGCATTCACTGTTCCCCATTGATCCAAGATCCACAGCTCGGGACCCCC-
TACCCGAGATCCGCCGGTTTTGACACTGACA-------------------------------------------------
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>chr2A_1
GCAGACCTAGCCTGGGCACTACGGGAAGAAGGAACTAGTCCACAAAGCCAACGATTCCCACACAAACCTCGGCTTTGAAG
ACTAGTTTGGGGGCTATTGAGGGTGTTCAGGACTAAGGGGTCCTCGGGCTGCCGGTCTATCTCTCGTGGGTCGGATAGTT
GGGCCACTCTTA--------TTGGAAGGCTGAG-CTATGTGCGACTTCGTGTTCAGGAAGAAAAGCTCCAAAGCTTTGGT
GTGTCCTCCAAGTCAAGATAATGAAGTCGGCATTTTTCTCCCCTAATGGTGACCGACCATGTGTAACCCTAGGGACCGCT
GGTGTCTAAATAAACCAGAGGGTTTAGTCCATAGAGCCTAGAACCATCATCCTACTTATCTAGGGTTTACTTCATCCGAT
CTCGTGGTAGGTCAACTCTATAATCATCATACCAACATA--TTAATACAATCAAGCAGGACGTAGGGTTTTACCTCTTTG
AGAGGTCCCGAACCTGGGTAAATATTATCCCTGCATTCCTTGTTCCCCATCGACT-AAGATCCACAACTCGGGACCCCC-
TACCAGAGATCCGCCGGTTTTGACACAGACA-------------------------------------------------
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>chr7D_3
--AGATCTAGCGCAAGCACTATGGGAAGAAGGAACTGGTCCACAAAGCCGACGATTCCCACACAAACCTTGGCTTCGAAC
ACTAGTTCGTGGGCTACTGAGGGTGTCTCGGACTAGGGGGTCCTCGGGCTGCCGGTCTATCTCTTGTGGGTCGGACAGTT
GGGCCACTATTA--------TTGGAAGGCCGAG-CTATAAGCGACTCCGTGTTCAGGAAGGAAACCTCCGAAGCCTTGGT
GTGTCCTCCAAGTCAAGATGATAGAATCGGCATGTTTATTCACTGATGGCAACCGACCATGTGTAACCCTAGGGACCCCT
GGTGTCTATATAAATAAGAGGGTTTAGTCCGTAGAGGCCAGAACCTTCATCCTACTCATCTAGGGTTTAGTTCATCTGAT
CTCATGGTAGATCAACTCTATAACCATCATAT--ACACA--TCAATATAATCAAGTAGGACGTAGGGTTTTACCTCTTCA
AGAGGGCCCGAACCTGGGTAAATATTGTCCATGCGTTCACCGTTCCCCATTGATCCAAGATCCACTGCTCGGGAC-CCC-
TAGCCGAGATCCGCCGGTTTTGAGACCGACAA------------------------------------------------
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>chr1D_3
--AGACCTGGCGCAAGCACTATGGGAAGAAGGAGCTGGTCCACAAAGCCGATGATTCCCACATAAACCTTGGCTTCGAAG
ACTAGTTCGGGGGCTACCGAGGGTGTCCCGGACTAAGGGGTCCTCGGGTTGTAGGTCTATCTCTCGTGGGCCGGACAGTT
GGGCTACTATTA--------TTGGAAGGCCAAG-CTATAAGTGACTCCGTGTTCAGGAAGGAAACCTTCAAAGCCTTGGT
GTGTCCTCCAAGTCAAGATAATAAAGTTGGCATGTTTATCCCCTGATGGTAACTGACCATGTGTAACCCTAGGGACCCCT
GGTGTCTATATAAACCAGAGGGTTTAGTCCTTAGAAGGAGGAACCATCATCCTACTCATATAGGGTTTAGTTCATCCGAT
CTCGAGGTAGATTGACTCTGTAACCATCATAT--ACACACATCAATATAATCATGAAGGACATAGGGTTATACCTATTCG
AGAGGGCCCGAACCTGGGTAAATATTGTCTATGCGTTCACTGTTACCCATCGACCCAAGATCCACAGCTCGGGAC-CCCC
TACCCGAAATCCGCTGGTATTGACACCGACA-------------------------------------------------
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>chr3B_5
----ACCTGGCGTAAGTACCATGGAAGGAAGGAACTGGTCCACAAAGCCAATGATTCCCCCACATGCCTCGGCTTCGAAG
ACTAGTTCGGGGGCTACTGAGGGAGTCCTGGACTAAGGGGTCCTCGGGGTGCCGGTCTATCTCTTATGGGCCAGACATGT
GGGCCGCTCTTGATCCGTTGTTGGAAGGCCGAA-CTATGAGCGACTCCGTGTTCAAGAAGGAAACCTCCGAAGCCTTGGT
GTATCCGCCAAGTCAAGATAATGAAGATGGCATGTTTATCCCCTGACGACACTTGATCATATGTAACCCTAGATACCCCT
CATGCCTATATAAACCAGAGGGCT------------AGAAGAACCATCATCCTACTCTTCTAGGGTTTAGTTCATTCGAT
CTCGTGGTAGATCAACTCTGTAACCATCACAT--ACACG--TCAATATAATCAAGCAGGACGTAGGGTTTTACCTCTTCA
AGAGGGCCTGAACCTGGGTAAACACCATCTCTATGCCTCATGTTACCAATCGATCCAAGATCCGCAGCTTGGGAC-CCCC
TACCCGAGATCTGCCTATTTTGACACCGACA-------------------------------------------------
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>chr7A_777
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--------------------------------------------------------------------AATGATTATATC
TTTCATTTGACATTAT------TGCAGGGGAAACTTGGACGGTAGGATTTCATATGTTCCA-----GACCGTCAGATTTT
GCTCCGCACTTGGGAACCCAGGATATACTAAAC---------CCAATCCAAAGCCACCCTCCGTCCTTTCTTATCCCAAA
CACAAC-ACTCGTGTAGCTCTCCCCTGGTCGAAGCAGAGGCATTTCGACGAACATGTCGCTCGTCACAGCTTTTCTGGCG
GGCTCAGCGGCGCCGGCGGTCGCGCCACGGTCCGCCCGCCCGTCGGTGGGCTTCTTTGGGGTCGGCGGAGGGTGCGCGCT
GTCGGTGGAGTGCTCGTCGCGGCCGCAGAAGAAAGGGACCAAGCACCATATGAAGACGCGGCCCAAGAAGACGCAGCGGT
GGGACATCAAGCGCCGCCCCGTTCAGTACGAGCCGCTGCCGGCGCTTCCCGATGACTGGACGCTCGTAGCCGCCGGTGCG
AAGGAAGATGAGGTGCCGCAGGATGAGGAGACCACGCCCGCCGCCGCCGTTGAGGTCGAGGTGGTC---------GCCGC
CCCTGCCGCCGCAGACTGACGCCGTGAAGTCCACCGTTGCCTCTCTGTATTTTATT---------TCTCCGCACGCATGG
TTTTTGCTTGAGATTATTAACT--GCTGCTACACTTTGCAATTACAATCCTGGATTCTACTTCAGTGACCACTGCTCCTT
TAGA-TTTAGTAGTTGCTTTGCTCGATGATTTATGGT------TTCAAGTTGTGTGCAATTCGATTTTACCTAGTGTTTC
TCGGTTCGACCACGGGTTGGTGATAGGTTCAAGCTGTCAAAGCATTACAAAGGGGC-------A------ATGTGGCTAC
CACAAAATGCTGGTGGGTAAACTCTCTTGAAGTTTGATCATTTTGGATGACCCTAGTGCTGCCTACTCCCTAGATACATC
----------------AATTAATATGGGACGGAGGTAGTA--GTATATACCATCTCCCAGATTGATTTTTGGTATGTCAG
AGCTGGAGACACTGAGTATAAGAAGTACATTTGTGATCAGTGATCACATTGCTGTCAAAGCTAAAA--TACCTTCGCGCC
TGTCTCGTGCCTACTGATGATTTGCTTCCCAGCAGTTATGTCAGAGGAATTGATCAGCCCTTGAAGGAATTTTGCTTGAC
AACTTACAAGAGCTATGTACAGAAAAATTATATTCATGATTTGGATGAGCATTGTGTGAAAGTGCCCAGAGGG-ATTGGG
AGAATGAAGGCCCTGCACACACTTGGTGTTGTCAACACTGCACGGGGGAAGGCCATTCTGAAGG--ATCTGTGTGAGCTT
AACTCAGTTGCGTAAGCTTGGAACGGAGTGACTGGCATCAACAAGAGAAACTGCAAGGAGCTCTGCTCTGATATCATCGA
TCATGTCCGCTTGCTGTCCTTGTCGATGTGCTCTGAGGGTGAGCCTGGGTTAGAACTTAGAAGGATGTCTAGATAAATTG
TCCCCACCTCCAGATTGCCTTCATATTCATAGCCTTAAGTTGTGTATGGCTATCTGGTCAAATTGCCTACATGGATTGAA
TAGCTACAGATGCTAGCCAAGTTAACTCTACGGAGTACCCAAGTGAAGCATGCTGACATAGTACTTGTAGCACTGGGGAA
GCTGACAAAACTTGCCATTCTACGTCTTCA
>SNPs
---------------------------S----------------------------------------------------
------------------------------S-----S---------S--------------------S------------
----------S----------------------------SS---------------------------------------
-----------------------------S---------------S--------S----S--------------------
----------------------------------------------------------------------S---------
------S-------------S-----------S----------------------S-----------------------S
---------------S----------------------------------------------------------------
--S---------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S--S-------------------S-
---SS---------S-----S------SS------------S-------S------------------------------
-----------------S------------------------S-------------------------------------
---------S-------------------------SSS------------------------------------------
------------------------------S---------------S---------------------------------
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----------S------------S--------------------S---------------------SSSSSSSSS-----
----------------------------------S--SS----------------------S------------------
---------------------SSS-----------------------S--------------------------------
----S--------------------------------SSSSSS-----------------------------S-------
-----------------------------------------S-------------SSSSSSSS-----------------
S-S-----------------------------------------SS--------SS------------------------
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---------S----------------------------------------------------------------------
-------------S------------------------------------------------------------------
-------------------------------S-----------------------------------------S------
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------------------------S-------------------------------------S-----------------
------S-------------------------------------------------------------------------
------S-------------------------------------------------------------------------
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>forward_651
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-----------------------------------------------------------------------CATCCAATT
AGGTCGCCCGA---------------------------------------------------------------------
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>reverse_1656
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-------------------------------------------------------GCAACAGGAATGTGGCTACG-----
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