>input_sequence_82555
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---ATACA-CCACTTTCCTTGTTTGTTCCGTGAAGAGGTAGATATAC---ATCACATGGGGAGCTGCGCGTCCAAGGACG
ACATGGCGGCGAGGCCGAGGAGCGCGGCGGTGCATCCGTGCCCGTGGATTATGCCGATGGCGCTGCCGGTGCCCGGCCAG
CGGGTCGCCGTGCGGATGCTCGCCAGCGAGTTGCGCGCTCTGCATGAAGCCACTGGTAGGGATACCAGCGGCGGGGACGC
CGACGCCGGCATCGGCCGTGCCATCCTGGACGGCTGCGTCGCCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACT
TGGCATTGGCAGGCTAGCCACCCATGGTGTGCAAGCAGTC------------------TTGTGTACATAAA---------
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>chr7A_1_TraesCS7A01G317000
CCAGTACGTGCGCGACAGCCTCCTCGGCCTGCCTGTCTGGCTACCGCTCC-------TCTCACTGCTCCGCACCTGCGTG
CATATGCGTATGTTGGCTAGCTCAAAG-----------------------------------------------------
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-------------------------------------------------------TAACAAGTTTCGATCCCGTTTTAGA
GGACGGTTTGGTCACGTGGAAGCTGACATGATGCTGGCGCGGCATA-------------GAAGGCCCTCTGTTTTTGCTC
TGCCACGGG-----------------------------------------------------------------------
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----TAACCTCCTTGTTCAATTAAGCAAC--------------------------------AACCCATGTGTTATATGGT
TGCATGCAACAAGATACTCTAGTGATTTAAACGGTCTTACATTTATTTACAGAGATGTTTAGGACTACTACTCCCTCCAT
CCTTGAAAGTGTGTACTTCGGATCAAACTATCTCAAAGTTTGATCGAGTTTGTACAAAAGTATATCAGTGCTTGTGAAAT
TAAATAGGAGTATAATGAAAATATGTTTATCATGAATCTAGTGCTACTAACTTGATAGCATAAATGTTGGTGTATTATTG
TATAAATACAGTCAAATATAAAAAAGTTTGATTTTTCAACAAAGTTGGAGGTACATTTTCATGGATGAAGGGAGTAGTTG
CCAAGGGAAAGAAAATCTCGATATATATCTTGGTGTTGATATGTAGT----------------------------CCGAA
CGGCCGGGAGCGTTGCTTGCACACAACAACAATTCTAAGTTGCTATGCGCAAAAGGAACCGATGGATCGGAAGCAAGGCA
AGCAACGAGCAACAACATGGATGCATTATTAGCATGATCCAAA-TTAAACCAGCTAGCGAAAGCTGGTATGAACGACATA
ATAATCATCACCCTATAGCTGCTAGTGCT---------------TGTGTTTCTTGCCGTCTCCACCCATTCGATCGATCA
CGCGTAGCGTAGCCATTCTCTTGACGCTTGTCCAACGCCATGGATTCGGTTGCTTCTTGAGTTTGCTTGTGCACATGCAT
GC----ATGGAGGCCGGCTTCAATTCCTTCATCGTCTCGCTCGACGGCACATATATATGCGAGTGCGTCTGGTACAAGTG
TGCATACA-CCACTTTCCTTGTTTGTTCCGTGAAGAGGTAGATATAC---ATCACATGGGGAGCTGCGCGTCCAAGGACG
ACATGGCGGCGAGGCCGAGGAGCGCGGCGGTGCATCCGTGCCCGTGGATTATGCCGATGGCGCTGCCGGTGCCCGGCCAG
CGGGTCGCCGTGCGGATGCTCGCCAGCGAGTTGCGCGCTCTGCATGAAGCCACTGGTAGGGATACCAGCGGCGGGGACGC
CGACGCCGGCATCGGCCGTGCCATCCTGGACGGCTGCGTCGCCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACT
TGGCATTGGCAGGCTAGCCACCCATGGTGTGCAAGCAGTC------------------TTGTGTACATAAATACGTAGTA
CATATGAATTCGCGAAAGAAAGAAAAATACTTGTATGCACATAGCTTCACAAACCACCTGATCAATTCGTCTCTGTACGT
ACGTAGTA----GTTGTAATTATGGAAAGACGAGTTGGATTTGTGGAACAGATTACATGTTCCGTTAGTTCATCGCATGG
CTTTGAGTACTTGCGACTTGCGACCCATGTACAAAAGGCGCACCATCGGATTCCAATTAGGCAGCTAGGAGGCGATTCAT
CAGTCCTAAAGCTAACAAGCTTTATCGCCATGGATTGGACTTTGGACACTGACAGCGATGTTACCCACTAACACACACGC
GCG---GCTCTCTCTCACCCATTCTATGTGCGAACCTTTGGCGTTCTTGGACGAACTGTGTGGTAGGTGCATGCATGGCC
GCCAGGCGCGCGGCACCTGCGACGCATAAGTAGCAGGAGTACATTTTTGTCCAAGGAATCTCTATATCTTTTGTCCGATT
TCCATCACGCCAAACGCGACTAA--TACTTATGTCGTGAACAGGTTAGTTTCGGAGCTGGACTAGATAAATCCTAGATCT
GTCCGCATGCATGTGCATGAACCGACCGACACATCACCAGTCTCGATCCTTTCCTGGTCTCATCCGTCCCCAGTCACCAG
ACGCATATTTGTGATCTACGGATGCATGTGTGCGCTCTAAACACCGATCCAGCTGCCATGGATAACTCATGTCGAGTCCC
GGTTGCCCATGTCTCCAAACCAGATGGCATTTTCAACGCGGATTCTCAAACCGTCTGCGTATCTTCGGATCAAAAAAATC
ATCAACGTGGGTCTGTATTGATCTGCCAAACGGTCCGGACACACTACTTTCCATAAACCAAAGACAAAGTTTGGGGTTGG
GGGTGGCCGGGTGGGGGCTTTGTGGGTCTTCGGACCACTGCCACGCTTGCTCCTAACTACCCGACCCACCAAAAACCCTC
TTCCAGCCGCCCACATTCATGCCGCTGTAAAGCGGCCACT
>chr7D_3
--AGTACGTGCGCGACAGCCTCCTCGGCCTGCCTGCCTGGCTACTGTCAAGAGACTGTCTCACTGCT------CTGCATG
CATATGCGTATGTTGGCTAGCTCAAAATACGTAGTAGTACAGCAAACTTCACGGCGCGACCCCATCCTATCCGGTGTGTC
CGTTTGTGGTAAAACGGACATACCAGACGACCCAGCACGTGACCCCATTTTAAAAACGTCCGTTTTCTGTCCGCTTCGCC
CCATCCTGGGAGCAAAGTAGGGCTGGCTTTGCGTCTGAAACGGACACGGGCGGATGCTCTCTGTCTCGTCCTCGTCCAGG
GCATGCTGTCCTTTTGCATGTGACCCTGACCCGCCTGTTATTGGCCCACACACCCACCCACCCACCCCTCTCTCTTTCCT
TCTTTTCTCTCCCTGGCCCACCACGCACACACACCACCACGAGGCACGCGGACGCGCGCGGCCGCAAGCGAGCGCGAGTG
GCGGCGGCGGCAAGCTACTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCAGGGCGCGGGCGCGGCAGGCGGTGCGAGGCGGAGTGCGGGCGGACGAGGCGCTAGGGCTGGACAGTT
TGGGGTCATCTGCCGCGTTGGGCGCCTCCAACGAAAGCCGGACACACATGTCCGTTTTCACACCTATAGCCACCCCAAAC
GGACAAAATTCGCATAAAACGGACGTCCGTTTGGGGTCGCGCGGTGGAGTTGGCCTAACAAGTTTCAACCCGGTTTTCGA
GGACGGTTTCGTCACGTTGAAGCTGACGTGATGCTGACGCGGCATACTCTGGGTGAACAGAAGGCCCTCTTGTTTCACTC
CCTAGTTAACTTTTTTGTGTCTTATTTATATTATAAAAATCAAAGTACAAGTCACGTAAGGATCGTCATGACAAAATTGT
AAAGATAGCAGAACATATCTGAGCTTGACACCGATGTCCGTCACCTCCCTCTGGCACCAGCATAGCAGCCACCGAAAAAA
GAGTGACGGATCACCTCCTCACCCGAGCTTGACGCGGTTCCATTGCTGATATGCAGCTTTGCAGACCTCCAAAGTGTCTC
ACCAAAAATAAAGTCATTGCTGTTGAACGAATGAGACCGGGGCAACACCCCGGACACACCATCGAACTCCAGATCAGGCT
TCCCACCCGACTAAGACGCCAAAGAAGGAAACCACACCTGCCATCCATCAACCACGAACCCAGCACATGTTCCATCTTCG
AAATGTCGTCGATGCAAATCATAATCTGCATCCGCTCTTGGGCTACCTCCCACGCTCCGCACCGACGTTGGAGCAGACGG
CGGAGCCCGAGGACACATGTCGACCACGAGAATGCCGCCGTCGCCACATCATCCTTGCTTCAACAGACTGGTTTCCAAAA
TCATCCCCAACTATAGGGCCGATCGCCTTGTCGGGGAATGATCCGAAGATTCTTTATTCAGCGCCGCCATCACCGTCGTC
GAAGCCAAGATAATGAACATCCTTAAAATGAAGCTACTTTAGCTTAAAACTTTTCATACAAGTGGATCTGATGATCCCCT
CACCACTAACGACCGAGGTCATCGGCGGAGGGAAACTGCCGGAGGACGGCGGCGAAGAAACTCTCTTTGGGAGAGACGGT
GGCAAGGGGGCCCTTTTTCTTCTGGAGGAAGAAAGAACGACCCGTCTGTATTTGGGGATGGCCGCGGCGGCGATGCTCTC
TTGTTAACGTCCTTGTTTAATTAAGCAACAACCCGTGTGTCATTTTCTTTTTTTGCGATGAAACCCATGTGTCATATGGT
TGCATGCAACAAGATATATACTGTAGTACGTACCCTACTTGCCAAAGGGT------------------------------
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-----------AAAAAATCAATATATACCTTGGTGTGAGTATGCAGTCACATATCTCATCTGTGCTGCAGTCAGCCCGAA
CGGCCGGGAGCGTTGCTTGCACACAACAGCAATTTGCAGTTGCTCTGCGGACAAGGAACCAATGGATCGGAAGCAAGGCA
AGCAGCGAGCAACAACATGGATGCATTATTAGCATGGTCCAAAATTAAAGCAGCTAGCCAAAGCTGGTATGAAGGACATA
ATAATCATCATCGTATGGCTCGCTAGTCCGCTAGTGTGTGTGTGTGTGTTTCTTGCCGTCTCCACCATTCGGTCC-ATCA
CGCGTAGCGTAGCCATTCTCTTGACGCTTGTCTAACGCCATGGATTCGGTTGCTTCTTGAGTTTGCTTGTGCACATGCAT
GGAGTGATGGAGGCCGGTTTCAGTTACTCCATCATCTCGCTCGACGGCACATATATATGCGAGTGCGTCTGGTACAAGTG
TGCATACACCCACTTTCCCGGCCTGTTCCGTGAAGAAGTAGATATACTACATCACATGGGGAGCTGCGCGTCCAAGGACG
ACATGGCGGCGAGGCCGAGGAGCGCGGCGGTGCACCCGTGCCCGTGGATTACGCCGACGGCGCTGCCGGCGCCCGGCCAG
CAGGTCGCCGTGCGGATGCGCGCCAGCGAGTTGCGCGCTCTGCATGAGGCCGCTGGTGGGGATACCAGAGGCGGGGACGC
CGACGCCGGCATCGGCCGTGCCATCCTGGACGGCTGCGTCGCCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACT
T------GGCAGGCTAGCCACCCATGCTGTGCACGCAGTCATGCACATACTAGACGACTTGTGTACATAATAC---AGTA
CATATGAATTCGTCTCTGTA-----------------CACATAGCTTCACAAACCACCTGATCCATTCGTCTCTGTACGT
AC---GTACTCGGTTGTAATTAAGGAAAGACGAGTTGGGTTTGTGGAACAGATTACACATTCGGTTGGATCATCGATCGC
ATGG----CTTTG--ACTTGCGGTCCATGTACAAAAGGCGCACCATCGGATTCCAATGAGGCAGCTGGGAGGCAATTCA-
--GTCCTAAAGCTAACAAGCTTTATCGCCATGGATTGGACTTTGGACACTGACAGCGATGTTACCCACTAACACACACGC
GCGCGCGCTCTCTCTCACCCATTCTATGTGCGAATCTTTGGCGTTCTTGGACGAACTGTGTGGTAGGTGCATGCATGGCC
GCCAG-CGCGCGGCACCTGCGGCGCA-------------TCCATTTCTGTCCAAGGAATCTCTATATCTT--GTCCGATT
TCCAGCACGCCAAACGCAACTAA--TA----TGTCGTTCACAGGTTAGTTTCGGAGCTGGACTAGATAAATCCTAGATCT
GTCCGCATACATGTGCATGAACCGACCGACACATCACCGGTCTCGATCTTTTCCTGGTCTCATCTGCCCCCGGTCACCAG
ACGCATATTTGTGATCTATGGATGCATGTGGGCGCTCTAAACTCCGATCCAGCTGCCATGGATAACTCATGTCGAGTCCG
GGTTGCCACGTGTCTCCAA-------------------------------------------------------------
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>chr7B_610
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--------------------------------------------AGT----------------------------CCGAA
-GGCCGGGGGCGTTGCTTGCACACAACAACAATTCTATGTTGCTCTGCGCACAAGGAACCGATGGATCGGAAGCAAGGCA
AGCAACGAGCAACAACATGGATGCATTATTAGCATGATCC-AAATTAGACCAGCTCGCGAAAGCTGGTATGAACGACATA
ATAATCATCATCCTATAGCTAGCTA----------------GTGTGTGTTTCTTGCCGTCTCCACCCATTCGATCGATCA
CGCGTAGCGTAGCCATTCTCTTGACGCTTGTCCAACTCCATGGATTCGGTTGCTTCTTGAATTTGCTTGTGCACATGCAT
GC----ATGGAGGCCGGCTTCAATTCCTTCATCATCTCGCTCGACGCCACATATATATGCGAGTGCGTCTGGTGCAAGTG
TGCATACA-CCACTTTCCTTGTTTGTTCCGTGAAGAAGTAGATATACTGCATCACATGGGGAGCTGCGCGTCCAAGGACG
ACATGGCGGCGAGGCCGAGGAACGCGGCGGTGCACCCGTGCCCATGGATTACGCCGACGACGCTGCCGGCGCCCGGCCAG
CGGGTCGCCGTGCGGATGCGCGCCAGCGAGTTCCGCGCTCTGCATGAAGCCACTGGTAGGGATACCAGCGGCAGAGATGC
CGACGCCGGCGTCGGCCGTGCCATCCTGGACGGCTGCGTCACCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACT
TT------GCAGGCTAGCCACCCATGCTGCGCATGCAGTCATGCACA---TAGATGACTTGTGTACATAATAC--TAGTG
CATATGAATTCGTCTCTACA-----------------TACATAGCTTCACAAACCTCCTGATCCATTCGTCTATGTGCGT
AT---GTA----GTTGTAATTGAGGAAAGACGAATTGGATTTGTGGCACAAATTACATACTCGGTTGGATCATCGCATGG
CTTTGAGCCTTTA--ACTTGCGATCCAAGAACAAAAGGCGCACCATCGGA--------------------GGCAATTCA-
--GTCCTAAAGCTAACAGGCTTTACCGCCATGGA-------TTGGACACTGACAGCGATGTTACCCACTAACACACACGC
GCTCG----CTCTCTCACCCATTCTATGTACGAATCTTTGGCGTTCTTGGACGAACCGTGTGGTAGGTGCATGCATGGCC
GCCAG-CACGCGGCACCTGCGACGCA-------------TACATTTTTGTCCAAGGAATCTCTATATCTT--GTCCGATT
GCCATCACGCCAAACGCAACTAAAATA----TGTCGTTAACAGGTTAGTTTCGGAGCTGGACTAGATAAATCCTAGATCT
GTCCGCATGCATGTGCATGAACCGACCGACACATCACCGGTCTCGATCTTTTCCTAGTCTCATCTGCCCCCGGTCACCAG
ACGCATATTTGTGATCTATGGATGCATGTGTGTGCTCTAAACTCCGATCCAGCTGCCATG--------------------
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>SNPs
SS---------------------------------S--------S-SSSS-----------------SSSSSS----S--
--------------------------S-----------------------------------------------------
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------------------------------------------------------------------S-S--S-----S--
---------S-------S---------S--------S---------------------------------SS---SS---
SSSSSSSSS-----------------------------------------------------------------------
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--------S--------S------------------------------------------------------S-------
----------------SSSSSSSS-S-SSSSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----SS--S-------S--------SSS----S------------------------------------
--------------------------------------------S------S----------------------------
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----------S---------SSSSSSS-S---------------------------------------------------
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---------------------------------S----------------------------------------------
------------------------------------S-------------------------------------------
----------------------------------S----------------S-----S-----------S----------
-------------------S------------------------------------------------------------
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-SSSSSS-------------------S------S------------------------------------SSSSS-----
------------SSSSS-S-SSSSSSSSSSSSSSSSS--------------------------S----------------
--SSS-----------------S-----------------------------------S---S---S-S-----------
-------SSS---SS--------S---------------------------------S--------S------S-----S
SS------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-----S--------------------SSSSSSSSSSSSS-------------------------------SS--------
-----------------S---------SSSS------S------------------------------------------
--------------------------------------S---------S---------------S-S----S--------
------------------S-----------------------S------------------------------------S
-------SSSSSSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1363
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---------------------------------------------------------------GCCCTCTGTTTTTGCTC
TGC-----------------------------------------------------------------------------
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>reverse_4347
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--------------------------CAAACGGTCCGGACACACTA----------------------------------
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