>input_sequence_82542
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----------------------------------------------------ATGGAGTCCAACGGTGGCGAGGGAGAGG
GCAACATCGACCTCAACCTCTCCCTGCAGCGGGCCTCGTCGCCGGAGTGGTTTGGTTACTTCTCCTGCTCCTACTGCACC
AAGAAGTTCTACTACTCCCAGGCGCTAGGCGGCCACCAGAACGCCCACAAGTCCGAGCGCAGCGTCGCCAAACGCACGCG
GGAGCTGGCCTACACGCGCCGCCAGGGCCACGTGGGCCAGCTCGGT---------GAGGCCAGCAGGAGAGAGAAGGACC
CGACTAGCAATGCCACGGGGAGCTCCTCGCACAGGAGGGCGTCCCCGCCGGAGGCAGCTCGCCGGGACCTCATCAACGAG
GAGATCGATCTGTCCCTCAAGCTCTGA-----------------------------------------------------
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>chr5A_1_TraesCS5A01G526100
TGTCTCCGGCAGATTTGTCTCTAGTGGATCTCCTCGGATCTGGTTGTCGTTCGTCTATATTCGTGTGTCTTCAGGTGTGA
TCCTTCCGATCTACACTACTCTTCATCAGCGACAATTGTTGTTTTGATGCGCTACTCCTATGAGGCCTTCACACGACAAC
TTTCAGACCGTCTACTACAACAAGTTTTGCCCGGCACCGACGAGGGAGGGCCAGTGATGGTGACATGCCTTCAGCTCGCT
TTAGTGCTTGTAGTCTTCGCTAGGTGGTCTACGGGTCTAGATATAACTTTTATTATTTCTGATGTTTGTTGTACTATCAT
AATTGAAAATGAATAACTCGGAAGTTTTCTCGGAAAAAAAGTTGTCTCATTAAAAGGATATAAGAAGCTAGCATTAAGGG
CATCTCCAAAGCAGACCCTCAGACATTTACTATATGTTCGAACCATAGTGTCCGGAGCACTTTTGTCATCCAACCGGAAT
CTATATATGTTTGCTTAGCAGTCCGAGTGTACAGATTTCGATATCCAAGAGACAAATTTGGAGGCTTTGCCACAGTCCGG
ATATGCACTTGACCAATCACATGCATGGTGCTTCTGTTCTGTCTCTTCTCCCGACCACACATGCATGGTCCATCTCTCCT
TTCTCCTCTCAACTGGACACTAAACCATAAATATCCCAACCGAATACTGTATAATTAGCATTGGATGGCTCCCTCTCGCA
TCATGTCTGTGGATCATTTTGTGAAATAGTTTCAAATTAGGTTCATTTTGTGTTGAACTTTGCGAAAAGGGTTAGTTTCA
CTACACCACCTTCTTCTCCCCAGGGCTCTCCCTCTCTCTGCTAGGGTTAGCTACTAC----TTAATCATTTGGCTCAGAA
ATTGGGGCAGCGCT-----GCATCAGTTCTCCTAGACAACTAGAATACGCGAGC---CTAACTAGCTAATTCCTGCTGAG
GCCACCGTGCGCACCACCTTTGCGCTTTTACCACCGGCCGTCCGGCAAACATATGGAGTCCAACGGTGGCGAGGGAGAGG
GCAACATCGACCTCAACCTCTCCCTGCAGCGGGCCTCGTCGCCGGAGTGGTTTGGTTACTTCTCCTGCTCCTACTGCACC
AAGAAGTTCTACTACTCCCAGGCGCTAGGCGGCCACCAGAACGCCCACAAGTCCGAGCGCAGCGTCGCCAAACGCACGCG
GGAGCTGGCCTACACGCGCCGCCAGGGCCACGTGGGCCAGCTCGGT---------GAGGCCAGCAGGAGAGAGAAGGACC
CGACTAGCAATGCCACGGGGAGCTCCTCGCACAGGAGGGCGTCCCCGCCGGAGGCAGCTCGCCGGGACCTCATCAACGAG
GAGATCGATCTGTCCCTCAAGCTCTGATATTAATTGCTTATTGCCTACTGGATTGAGGTTTTTGTAACTGCAAACTTCTG
GTCGATTCTCCTTATTATTATTATTTTCTTGATGCTGGTTAATTCCTCTTTTCTTGATTCTACTGGAGTAGTTCTCAGTC
GGTGATTACCTAACGAGGAGCTTCTGAGAATATATTTTGTTGAGGATATAAGACGTTTTAGATCACTACTGATGTCTAAC
AGTCTTATATTAGTTTACAGAGGAATTACTTCAATACCAGAGTCTTTATAATGCATGCACCTGTCCTTGAGATGAATAAT
CTAAAGGCCTCTTTGGTTTAGAGAAATCTTATAGGAATTTTATAGGATAGGATTTTTATAGGATTTTTTTAAAGCCCTTT
GGTTTGTAGGAATGGAATCCTATTTCTGTGCAGGAATTCTTTCTATCCCTCACATTTCATAGGAAAATAAACATTAGCCT
AGGCCTAATGAAAAAAAATTCTATGATGTGAATCAAAGAACATCTCCTTTCCTATTCCTACTCATAGGATTTGAGATACA
TGTCATCTCATTTTTTATGACTTTTCTATTCCTATGATTTTCCTATCGTATGAACCAAAAGAGGCCTAAATATTCATTTA
CTTACACTATATCCACCTGCTCTATGACTCCATTCAGTGTGTAGATTTATGTCAGTCAACTTTAACACCTGTATTTCGGT
CGTGGATGAATACTACTGGTGTTCTCATGGCCATGTCCATGTATGCGGATACTATAAACATATGCCCCTTTTTCGCAAGC
TACATATTTGAAAAACAAAAAGTTGCTCTTACTAACCAAAGTCTACTGGACTAAGAGCATCTTTAGCAGATCTCGCAACC
AGCCATCATGCAAAACTCATTTATGGTATCCCGGAAACGTTTTTTTGCAGGACCCGTACCCTTAGCCACAATAGATCCTT
CATACCGATACCGCGTATTTAAATTTGTAGTTCACACTTTAAACATAGATCACTGGAGTTCATACAT
>chr5A_828
CTCTCTA-------------------------------------------------------------------------
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---------------------------------CTCCCTTCTAGGGTTGTGCTGTACCGCTTAAATCATTTGGGTGGGAA
ATTGGGGGCACCGCCGTACGCATCAATTCTCCTAGACAACTAGAATACACAAGCTAGCTAGCTAGTTCGCACCTGCTGAG
ACCCCCGTTCGCACCACCTTTGAGCCTTTTCCGCCGGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGG
GCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCAAC
AAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCG
GGAGCTGGCCGCCGCGCGCCGCCACGGCCACGTGGGCCAGGTCGGCGCCGGCGAGGAGGCCAGCAGGAGAGGGAAGGACC
CGACCAGCAATGCCGCCGGGAGCTCCTCGCACAGGAGGGCGTCTCCGCCGGAGGCAGCCCGCCGGGACCTCATCGCCGAG
GAGATCGATCTGTCTCTCAAGCTCTGAATTA-------------------------------------------------
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>chr5D_828
CTCTCTA-------------------------------------------------------------------------
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---------------------------------CTCCCTTCTAGGGTTGTGCTGTACCGCTTAAATCATTTGGGTGGGAA
ATTGGGGGCACCGCCGTACGCATCCATTCTCCTAGACAACTAGAATACACAAGCTAGCTAGCTAGTTTGCACCTGTTGAG
ACCCCCGTTCGCACCACCTTTGCACCTTTTCCGCCGGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGG
GCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCAAC
AAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCG
GGAGCTGGCTGCCGCGCGCCGCCACGGCCACGTGGGCCAGGTCGGCGCCGGCGAGGAGGCCAGCAGGAGAGGGAAGGACC
CGACCAGCAATGCCGCCGGGAGCTCCTCGCACAGGAGGGCGTCTCCGCCGGAGGCAGCCCGCCGGGACCTCATCACCGAG
GAGATCGATCTGTCTCTCAAGCTCTGATATTA------------------------------------------------
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>chr5B_828
CTCTCTA-------------------------------------------------------------------------
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---------------------------------CTCCCTTCTAGGGTTGTGCTGTACCGCTTAAATCATTTGGGTGGGAA
ACTGGGGGCACTGCCGTACGCATCGATTCTCCTCGACAACTAGAATACACAAGCTAGCTAGCTAGTTTGCACCTGCTGAG
ACCCCCGTTCGCACCACCTTTGCGCCTTTACCGCCTGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGT
GCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCGAC
AAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCG
GGAGCTGGCCGCCGCGCGCCGCCACGGCCACGCGGGCCGGGTCGGCGCCGGCGAGGAGGGCAGCAGGGGAGGGAAGGACC
CGACCAGCAATGCCGCGGGGAGCTCCTCGCACAGGAGGGTGTCGCCGCCGGAGGCAGCTCGCCGGGACCTCATCACCGAG
GAGATCGATCTGTCTCTCAAGCTCTGATATTA------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S--------SSSSSS--------S----------S-SS---
-------SSS-SSS-----------S----------------------S-S---------S----S-SSSS---------
S--S----S----------------S------S-------S---SSSSS-----------------S-------------
--S-------------------------S-----S------------SS-S-S--S------S-----S---------S-
-------------S------S-----S-------------------------S---------------------------
----------SS-S----------S---------------S----S-------------------------S--------
----S---------S----------------------------S-------------------------------S----
--------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_416
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----------------------------------------------------------------------------AGGG
CATCTCCAAAGCAGAC----------------------------------------------------------------
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>reverse_2235
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--------------------------------------------------------------------------GCAACC
AGCCATCATGCAAA------------------------------------------------------------------
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