>input_sequence_82475
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------------------------------------------------ATGGCTGCCACCATGAAGCTGACAATCACCTT
CCTCCTCCTCGTCTCCGGTATGTCTCCCCAACCGTGTCCTTGACTCCTTATGCTTCAGACCATGTACGCACACCTGTGTG
ACACGCTTTCTCTGACCGCTTCACTC-----TTGCTTGTTCATTGTCGTGGATCGAGCAGGGCTGGTGGTGTTCGGCGAC
GCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTCCAGGGAGGGCACATCACCTGCGACAACTACCCCGGGCAGAAGCTCGA
CGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCA
CCACCACGCCGGAGTACTGA------------------------------------------------------------
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>chr4B_1_TraesCS4B01G064600
AGTGTCGTTTCACTAGGAGACTTTGGGGCTTGATCAAGGACTGGCTTGGGCTAGACGGCATGGACACTTCTGGCTGGAAT
GACGAGCGCTCCATCAAGGATTGGTGGATCAACATGTCCGAGGAAAACGTGGCAAATCGGAAGGCAATGGCAACCCTCAC
CATGCTGTCTTGCTGGACTATTTGGTGTGAGCGAAATGCTAGGGTGTTCCAACAAAAATCGACGCTACCATCCATCATAT
TTGGTAACATCAAGAATGAGGCTAGGCTTTGGATCAGGTGCGAAACACTTGGGAAACATCATGCCGCGAGAGTAGAATCT
ATGTATCTTATCTTGCTTTTCTGTTGTGAAAGCAACTCTAAACTTCTTCTTAATTAATGGATGAGGCAAATCTTTTGCCT
CCGTTTCGGAAAAAAAATCCAGAGTAAAATGATTTTCTTTTTTGTGGGTGATCCAGAGTAAAATGTTGAATGCCAGAAAA
CTTTTCCAAGCTCAAGGTAAGAAGGTCAACAAAATCCAGGCCAGGAAAGTTGTTGCTAACTTCAGAGCTCATCTCCCGCG
CTATGTGAACCCCACGACGCGACTTTTGAGCGGTCAAC-----------------------------TTGCAAAAGATTG
G-----ACGCGGATCCATCCAGCACGGCACC--------CCTCACATACTCAGATCCGCGCGCCACGTGATGCTGCTTCA
AGTCAGAGGAGGCGCGCGACCAAGTCAGCAACCTATTCTGACTCTTCGCCCTGGATCGAATCGGCCGGACAAAGCGTGCT
GAGATCAACGCGAAGCCTGGCCATAGTTATGAA--------ATCCACGACGCCGGCGTCGACGCAAGCACGTACGCACCG
GAGTACGTACATCAGTACCTTGCGC-------------------------------------------------------
--------CATGCAGTTTGGCTGAACCGAAAGCCCTACGTACAC------------------------------------
-------------------CCACAGCTCCCCTATATAAACGCACCGGCGCCGCGCTGCAAAGTGCAAACACAGATCGCAC
GGCCCCAAAGCAACACACGAAATTAAGCAAGCGCACACACACGCCAGCATGGCTGCCACCATGAAGCTGACAATCACCTT
CCTCCTCCTCGTCTCCGGTATGTCTCCCCAACCGTGTCCTTGACTCCTTATGCTTCAGACCATGTACGCACACCTGTGTG
ACACGCTTTCTCTGACCGCTTCACTC-----TTGCTTGTTCATTGTCGTGGATCGAGCAGGGCTGGTGGTGTTCGGCGAC
GCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTCCAGGGAGGGCACATCACCTGCGACAACTACCCCGGGCAGAAGCTCGA
CGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCA
CCACCACGCCGGAGTACTGAGATGAATTACATGCGTTCGTCAT---TGCTGGCTTGAGACCGT--TCAATGAAGCTGCAA
GTGTGT------CGTGGAATAAGTAA------------------------------------------------------
--------------------------------AGTATAATGTAAGCTTGTGTCAGTGGAATAAATAACGAAAGGAACGCA
GTCTGTGGATCAAGTTTCATAGCAGGGCCAGGCACATAAAA-GGAAACCGAAAAAACACCGAATTAGCTAGGAGTATCGG
AAACAGCCGAGTGAGCGCACATGATCAAAACAATAGCTCAAAATG-----------------------------------
-GTTATTTTTGTAGCGGCGGGACAGTGTGTCGATGTGAATTTTGTGAGGAAATAACGACCATAATTTTGGTATTGACGGC
CGCTTTTATCACCTCTGAATTTACTTCCATGGTTACTAAAATGAGGAATGATTACACCCCCTTAAAAGTTGAACGGAGCT
CTAGTAATCCCTGTTTTCGAACCATCGCTTGGTTAA-CGCCTTTGAAAAAGTAGCATCTACACGATGTGATCCCTTGG--
------------------------------------------------ATTGTATATATAGCCTTGCTCATCGTCAATAA
AAACAGTAGCTCATTCTCAATCTCATTTTTACTTCAACATTGCCAATTGTTTGGCATTGTGATTCCGT------------
--------------TGCACGGTTCGAATAAATTCTATGAGCATAATGTGCTGAGACACATCAAAGATTTTAGGCGCATGA
TAGATTCAGTTCAGCGAGCGTGCACAGAGAATTGACCAGATGTGTTGCCCTACTCACTTTTCACTCTTCCTT-GTTAACT
TTGGACGAGAAAGCAAGAAGAGTTGTGTTCTTGAGAAGCACTAAGCGCTGCTTTCCATTAACGAA----GTAGTAGTGAT
TGGCACTTCGATAAAAGAATGCAATATAATGGCCATGTGTTTCAAACTTTCAATGATCCACTAACTCTGGATCCAAGCTG
CGACCACTGATAAACAACACTGGAAGTAAAGAAATGAAACAATGATGGTTGTTTGAGTGGACTATCTTTGATCGAGAGCC
CGATGTTGGATGCAAGATAAGTTTTCTAAGCACCAA
>chr4D_462
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-------------------------------------------------------------AATGTTGAATGCCAGAAAA
CTTTTCCAAGCTCAAAGTAAGAAGGTCAACAAAATCCAGGCCACGAAAACTGTTGCCAACTTCAGAGCTCATCTCCAACG
CTGTGTGAA-CCCACGACGCGACTTTTGAGCGGTCAACCCGATCCGCATCGACGAAGCAGTGGCAACTTGCAAAAGATTG
G-----ACGCCGATCCATCCAGCACGGCAACCCTCACGGCCTCACATACTCAGATCCGCGCGCCACGTGATGCTGCTTGA
AGTCAGAGGAGGCGCGCCACCAAGTCAGCAACGTCCTCTGACTTTTCGCCCTC------------------------GCT
GAGATCAACGCGAAGCCTGGCCATTGTTCTGAA--------ATCCACGAAGCAGGCGTCGACGCAAGCACGTACGCACCG
GAGTAC----ATCAGTACCGCGCGCCACGTGATGTCGCTTCTAGTCTCCAGTGAACCCACGTACGCGGCACAGGGTCAGA
GATCCCGGCATGCAGTTTGGCTGAACCCAAGCCGGACGTACACCCACATCCCCGG-------------------------
----------------------------CCCTATATAAACGCAACGGCGCCGAGCTC-------CAAACACAGATCGCAC
CGCGCAAACGCAGCACACGTA------------------------AGCATGGCTGCCACCATGAAGCTCACAATCACCTT
CCTCCTCCTCGTCTCCGGTACG--TCCCCAGTCGTGTGCTTAACTCCTTATGCTTCAGACCATGTACGCACACCTGTGTG
ACACGCTTTCTCTGACGCTCTATGCTTTGCTTTGCTTGTTCTTTGTCGTGGATCGAGCAGCGCTCGTGGTGTTCGGCGAC
GCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTCCAGGGAGGGCACATCACCTGCGACAACTACCCCGGCCAGAAGCTCGA
CGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCA
CCACCACGCCGGAGTACTGAGATGAACTACATGCGGTTCGGCATGATGCTGGCTCGAGTCCGACCTCAATGAAGCTGCAA
GTGTGTGTGTGTCGTGGAGTTAGTAAATACCCCCTCCGTATCAAAATATAAGA---------------------------
-----CATCTTACGTTT---TAATACAAAGGGAGTATGATGTAAGTTTGTGTC-GTGGAATAAATAACGAAAGGAATGCA
GTCTGTTGATCAAGTTTCATAGCAGGGCCAGGCACATAAAAAGGAAACCGAAAAAACACCGAAGTAGCTAGGAGTATCTG
AAACAACTGACCGAGCGCACATGATCAAAACAATGCTAGTAAAAAGGTTTTTAACGATGGGATATGTGGTCGTTCAAAGT
TGTTATTTTTGTAGCGGCGGGACAGTGTGTCGATGTTAATTTTGTGAGGAAATAACGACCATAGTTTTGGTATTGGCGGC
CACTTTTATCACCTCTAAAATTACTTCCATGGTTACTAAAATGTGGAATGCTTACACCCCCTTTAAAGTTGAACGGAGCT
CTAGTAATCCCTTCTTTGCAACCATCGCTTGGTTAACCGCCTTTGTAAAAGTAGCATCTGCACGATGTGATCCCTTGG--
------------------------------------------------ATTGTATATATAGCCTTGTTCATCATCAATAA
AAACAACACCTCATTCTCAATCTCATT-TTACCTCAACATTGCCAATTGTTTGGCAGTGTGATTCCGTGGGAGTCCATGT
AGATAATCCAACTTTGCACGGTTCGAATAAATTCTCCGAGCAAAATGTGCTGAGACACATAAAAGGTTTTAGGCGCATGA
TAGATTCAGTTCAGCGAATGTGAAC--AGAATTGACCAGATGCGTTGCCCTACTCACTTTCCACTCTTCCTTGGTTAACT
TTGGACGCGAAAGCA-----------------------------------------------------------------
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>chr4A_596
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-----------------------------------AAC-----------------------------TTGCAAAAGATAG
GATAGTACGCCGATCCATCCAGCACGGCAGT--------CCTCACATACTCAGATCCGCGCGCCACGTGATGCTGCCTCA
AGTCAGAGGAGGCGCGCGACCAAGTCAGCAACCTCCTCTGACTTTTCGCCCTCGATCGGCCAT---GGACAAAGCATGCT
GAGATCAACCCGAAGCCTGACCATAGTTCTGAACTTCTGAAATCCACGAAGCTGGCGTCGACGCAAGCACGTACGCACCG
GAGTAC----ATCAGTGCCGCGCGCCACGTGATGTTGCTTCTAGTCTCCAGTGAACCCACGTACGCGGCAGAGAGTCAGA
GACCCCAGCATGCAGTTCGGCTGAGCCGAAGCCGGACGTACTCCCCGATCTAGATATATTCATTTATACAACGAGTAATT
TGAAACGGAGGGAGTACCTCCATAGCTCCCCTATATAAACGCACCGGCGCCGAGCTACAAAGTGCAAACACAAATCGCAC
GGCGCAAACGCAACACAC--A------------------------ATCATGGCTGCCACATTGAAGCTCACAGTCGCCTT
CCTCCTCCTCGTCTCCGGTACG--TCCCCAGCCGTGTCCA--------TATGCTTCA-ACCATGCACGTACACCTGTGTG
ATGCGCTCTCTCTGACGCTCTATGC-TTGCTCTGCTTGTTC-TTGTCGTGGATCGAGCAGCGCTGGTGGCGTTCGGCGAC
GCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTGCAGGGAGGGCACATCACCTGCGACAACTACCCCGGGCAGAAGCTCGA
CGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCA
CCACCCCGCCGGAGTACTGAGATGAATTACACGCGGTTCGGCATG---CTGGCTCGAGTCCGAGCTCTATGAAGATGCAA
GTGTGTGT--GTCGTGGAGCAACTATAGATACACTTCCTATCAAAATGTAAGACCATTTTTGACATTATGATAGTGTCAA
AAAAGCATCTTACATTTTAGTAATACAAAGGGAGTATCATGTAAGTTTGTGTC-GTGGAATAAATAACGAAAGGAATGCA
GTCTGTCGATCAAGTTTCATATCAGGGCCAGGCACAGC-AAAGGAAACCGGCAAAACACCAAATT---------------
---------ACCGAGCGCACATGATCAAAACAATACTAGTAAAAGGGTTTTTAACGATGGAGTATGTGGTTTTTTTCTTT
TCAAAACACAATACAGACGCAAGCGCTTATACATACGTGTATACACTCACCCCTATAACGCACACACACACGCACATGCA
TTGCCGAAAATTCTGAAATAAATCCAGAAATAATGTAAGCAGCAGGACTTGAACCCTGATGGGCTGGGGATAACA-----
-TTGTCATTCTAACCATCCAACCATAGGTTAGTTCA-TGAATATGTGGTTGTTCAGAGTTAAAATGTGATTGTTGAAAGT
CTTTGGTAAGGTTATGGGCCCCGTTATGTGATCGTTGAAGTCTTAAAAATGATAGATTTAGTTTAGCTATTCGCAAAAAA
AAAG----------------------------------------------------------------------------
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--GATTCAGTTTAGCGAGCGTGAACAGAGAATTGACCAGATCCGTTGCCCTACTCACTTTCCACTCTTCCTTGGTTAACT
TTGGACGAGAAAGCAGTAAGCGCTGTGTTCTTGAGCAGCACTAAGCGCTGCTTTCCGTTAACGAAGAACGTAGTAGTGAT
TGGCACTTGGAGAAAAGAATACAATGGA-----CATGTGTTTCAAACTTTCAATGGTCCACTGACTCTGGATCCAAGTAG
CGACCATTGATAAACAACACTAGAAGTAAAGAAATGAAACAATGATGGTTGTTTGACTGGGTTATCTTTGATCCAAAGCC
CGATATTGGATGCAAGATAAGTTTTCTAAGCACCAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
---------------S---------------------------S----SS------S-------------------SS--
--S------S----------------------------------------------------------------------
----------S------------------S--------------------------------------------------
----------------------------------SS-------S--------S-----SSSSSSSS---------S----
----------------------------S--------------------S--S---------------------------
------SSSS---------SS-----------------------------------------------------------
------------------------------SS-SSSSSSSSSS-------------------------------------
----------------------S-----------------------------S---S-----------------------
---S-S--S----------S-SSSSSSSSSSSSSSSSSSSSSSSS-----------------------S-----------
--------------------S-SS------S----------S--------------------------------------
----------------SSSS-SSSSS---------------S------------------S-------------------
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-----------------------------------S-SSSSSS-----------S---S---S-----------------
------------------S-------------------------------------------------------------
-------------------------------------S-------S-------S----------------------S---
------S-----------------------------------------------------------------------S-
-----S-S--SS-----------------------SSSSS---S------------------------------------
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-S--------------S--S------------------------------S------------S----------------
------------SS----S--------------------------S-------------S--------------------
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-----SS-S------------------S----S-----------------------S-----------------------
-----------------------------------SS-----S-----------------S----S--------------
----------------------S-------------------S-----------------S-------------------
---------------SS---S-S------------S--------------------S-----------------------
--------S--S--------S----SS-SSSSS----------------------S------S--------------SS-
------S--------------S----------------------------------S---SS-----------S-S----
----S-------------------------------
>forward_1162
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----------------------TTAAGCAAGCGCACACACAC--------------------------------------
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>reverse_2623
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--------------------------------------------------------------AACTCTGGATCCAAGCTG
CG------------------------------------------------------------------------------
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