>input_sequence_82433
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-------------------------------------------------ATGGCGCAGGCCAAGCGGTACGTGCTGCGCC
TCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCGTGGTCACCGCCTCCACCGTC
GAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCGGCCGTCGGCGAGGTGCTCGC
CATGCGCCTCCGGGTCGACGGCCTGGCGCGCGAGCCCATCCACGCCGACGCCGCCAAGGAGGTCGAGAAGAAGGGCTTCA
AGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCCACGTCGACGACGACGGCGAC
CATAGGCGGCATGTCTGA--------------------------------------------------------------
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>chr5B_1_TraesCS5B01G351100
CAGGGTTAAACCCTAGGCAGATCAGGGCCTCCCACGTTGCCGCCGTGATGCGGGCGTTGGTGTCCTCTTGCTGCGCGGCG
ACGGCGAGGTCGGCAGTGGCCACTGCTTTGTCCCTTGCTTCTGTCGCGTGCCTCCGACCCTTCCTCTTCGTTGACTCGGC
GGCCCGCTCCTCGGGCGTCAGTTGCTTCTTCTTCTTGGACGCCGTGGCGGTCTTGCAGGGGGAAGGGTAGGGGTTTTGCA
GGGGGGTGAGGGGCTTGCCTTTGTCGAAGGGGGTGAAGGTGATGCCGGACGAGGCGAGGGAAGCGAGGCCGGCGGCTGCA
TCGAGGGCGTCGTCCATGGCGAGCGGCCGGGAGCGCGCGGGGGCGGGAGAGTTTTTGGGAAAGTGGAGGGAAATGGTAGA
AGCTTTGCTACTGACTGGCGGGCATCGTGTCTGTGCCAATGCAAATCAGGCTAAAAAATGAGCTGTGAATGTGTCGACAG
ACGGATAAAAGCTGATGTACGTTTGTTTGGGTCGACGCTTTGGGCGGACTTTTCTGTCCGCTGTGACACAAACAGAGGGG
CACGGACAAAACAGGTGGCCGCCTTGGAGTTGCTCTAAAGATTTATTTAGAGGTGAGGGCTCATTTGCGTTGAGTTCGGC
AACCACAGAGTTTATTTCAGACTTCGCTGGGAAAATAGCAGTAACTCCTGCATCTGGTCTATCACGTCCTCTGCCTCTCC
CCGCACAGACGGCGCAACCACGCCGGACGACGTCGCCCCGCCTCCCCCCTCCCCCCTC------CCTTCTTCCTCAGCGT
AGACCCTCCTCCGGCCTCGCCAACCGGCGGTCCTCCCCGCCCAGTC--CTGCCGTCCTTCCCCGTCGCACGGCCCCCTGT
CCCCCTCTTTCAA-CCGGGCGCGCCCCAGCTGCTCGTCGAAACGCCGCAGAGGCGTTCGACTGCCTCCACGCGTGCTAGG
CGCGCCCCCGGCAGCTCCCGCGGCGGCGGACGCGGCGGGCCAGGTCCCCATGGCGCAGGCCAAGCGGTACGTGCTGCGCC
TCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCGTGGTCACCGCCTCCACCGTC
GAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCGGCCGTCGGCGAGGTGCTCGC
CATGCGCCTCCGGGTCGACGGCCTGGCGCGCGAGCCCATCCACGCCGACGCCGCCAAGGAGGTCGAGAAGAAGGGCTTCA
AGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCCACGTCGACGACGACGGCGAC
CATAGGCGGCATGTCTGACAACCATCAGTGCGTCTCTGGAACTCTGC-CCCCCGTGCCTGTCATTTGTGTACTCCCTCCG
TTCGGAATTACTAGTCGCGAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACATCCATGTCCGCGACAAGTAATT
TGGAACGGAGGGAGTACATGTGTGCGTTGATTTGCAATACACAGCAGGCTAGTAAAAAAATGCGGAAATTTAG--GCTTT
GATTGTAACATGCTGTTCAATGTTGTCTCACTTTCCTAGTCTCAGCTCCCAGATAATTTGATACTCATGTTATTAACTCT
GAACCAGTGAACATCTACAGAGGAAA------------------------------------------------------
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-----------------------------------------------------------------------------ATT
ATACATTTGGTTTGATTTGTTGCAAGGTCATTGCTGAATCTTAACTTG----TATCTAGACAGAGGCAACTCTGCAATGT
TTCTGAATCACTTCTCAGTAAAAAGAAAAGAAATGCAGTAAAAAAAATGCACAAAAAGGTCAAGCAGGGTTACTGCTGTA
GTGGCT--GAAATTTATACCCCATATCTTGTTGTCACTTCAGGAAAGGCATCTCAGATGCACGAAAACCTCAAGAATGTT
TTGATTTGCATACTAGCTAACAACAAGGTTTACAGCGAACATGCTGTTATTATAATAGCATCTACCTCCGACTCGATGAC
GACGGCGACCGTAGGTGGCATGTCTGACAGACAGGCATCAGTGTTCAGTGCGTTCCTTCAATTCTCTGCCTTTGCGCCAT
ACTACTATGTGTTGCTTTGCAAATGTGTAAGGGGCAACAAAATAAAGTGTTAACATGCTACTTCGATGTTGCCTCATGCC
ACCGTACTGTTCTAGTTCTCAGGTCTCAACTAGTTCACATATTAATGTGGATAAGCATGAACTGTTCTAGTTCTCAGTTC
TCTAGTTGCCA----------------------AGCAGGAACAATTGAGCACCTACAGAGGCACATGATACATGTAGTTT
GCTTTTTTGCAAGGTCACAGCTGAAAATTAACTTATGTGTTCTGTCTAAATAGCCATTTC
>chr5D_714
CCTCTCCT------------------------------------------------------------------------
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--GCGCGGACGGCTACACCGCGCCGGTCGACGTCGCTCCGGCCCGCCCCCGCCTCC---CTCCTCCTCCTTCTTCAGCGT
CGATCCTCATCCGGCCTCGCCCACCGGCGGTCCTCCCCGCCCTGTCTCTCGCCGTCCTTCCCCGTCCCACGACTGCCTCA
TTCGCCCGGTCGCGTCGGGCGCCCCCCAGCTGCTCGTCGAAACGCCGCAGAGGCGTTCGACCCCCTCCGAGCGTGCTAGG
CGCGTCCCCGGCTGCTCCCGCGGCGGCGAAGGCGGCGGACCGGATCCCCATGGCGCAGGCCAAGCGGTACGTGTTGCGGC
TCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCGTGGTCACCGCCTCCACCGTC
GAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCACCGCCGTCGGCGAGGTGCTCGC
CATGCGCCTCCGGGTGGACGGCCTGGCGCACGAGCCCATCCACGCCGACGCCGTCAAGGAGGTCGAGAAGAAGGGCTTCA
AGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCCACGTCGACGACGACGGCGAC
CATATGCGGCATGTCTGACGAGCATCAGTGCGT-----------------------------------------------
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>chr5B_737
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----------------ACCGCGCCGGTCGACGCCGCTCCGCCCCGCCCCCGCCCGGCTCTCCCTCCTCCTCCTTCAGCGT
CGATACTCATCCGGCCTCGCC----GGCGGTCCTCCCGGCCCTGTC--TCGCCGTCCTTCCGCGTCCCGCTACAGTCTCA
TTCGGCCGGTCGCGCCGGGCGCCCCCAAGGTGCTCGTCGAAACGCCGCAGAGGCGCTCGGCCTCCCCCACGCGTGCTAGG
CGCGTCCTCGGCTGCTCTCGCGGCGGCG---------GACCGGGTCCTCATGGCGCAGGCTAAGCGGTACGTGCTGCGCC
TCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGTCGCGTCGTGCTCACCGCCTCCACCGTC
GAGAAGCCCCTCCAGGATGGGCTGGAGAGCGGCCGCGCCTGCAACGCCAAGGCAGCCGCCGCCGTTGGCGAGGTGCTCGC
CATGCGCCTCCGGGTCGACGGCCTGGCCCGCGAGCCAATCCACGCCGACGCCTCCAAGGAGGTCGAGAAGAAGGGCTTCA
AGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCCACGTAGACGACGACGGCGAC
CATAGGCGGCACATCTGATGAGCATCAGTGCGTCCCTCCAACTCT-----------------------------------
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>chr5A_737
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----------------ACCGCGCCGGTCGACGTCGCTCCGGCCCGCCCCCGCCTCCCTCCTCCTCCTCCTCCTTCAGCGT
CGATCTTCATCCGGCCTCGCCCACCGGCGCTCCTCCCCGCCCTGTC--TCGCCGTCCTTCCGCGTCCCACCACAGCATCA
TTCGCCCGGTCGCGCCGGGCGCCCACCAGCTGCTCGTCGAAACGCCGCAGAGGCGTTCGACCGCCTCCACA---------
--CGTCCTCGGCTGCTCTCGCCCTCGC---GGCGGCGGACCGGGT-CCCATGTCGCAGGCCAAGCGGTACGTGCTGCGCC
TCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCGTGGTCACCGCGTCCACCGTC
GAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCTGCCGTTGGCGAGGTGCTCGC
CATGCGCCTCCGGGTGGACGGCCTGGCCAGCGAGCCCATCCACGCCGACGCCGCCAAGGAGGTCGAGAAGAAGGGCTTCA
AGAACCGCACCAAGGTCTGGGCCATCCTGAACGCGCTCCGCAGCCACGGCGTCAACCTCCACGTCGACGACGACGGCGAC
CATAGGCGGCATGTCTGACGAGCATCAGTGCGTTCCTTCAACTCTCTGCCTCCGTGCCTGTCATTTGTTTATG-------
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------------------TGTGTGCGTTGATTTGCCATGTGCAGGAGGCTAGTAAAAAAGTGCAGAAATTTTAGTGCTCT
GATTGTAACATGCTGTTCAATGTTGTCTCACTATCCTAGTCTCAGCTCCCAGATAATTTGATACTCATGTTATTAAGGCT
GAACCAGTGAACATCTACGGAGGAAA------------------------------------------------------
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-----------------------------------------------------------------------------ATG
ATACATTTAGTTTGATTTTCTGGAAGATCATTGCTGAATCTTAACTTTTTACTACCTAAACAGAGGAAACTCTGCAATGT
TTCTGCATCACTTTTCAGTAAAAAGAAATGAAATGCAGTAAC--AAATGAACAAAAAGATGGAGCAGGGTCACTGCTGTA
GTGGCATGGAAATTTATACCCCATATTTTGTTGTCACTTCAGACAAGGCATCTCAGATGCACGAAAACCTCAAGAATGTT
TTGATTTGCATACTAGCTAACAACAAGGTTTACACCGAACATGCTGTTATTATAATAGCATCTACCTCCGACTCGACAAT
AATGGCGAACATAGGTGGCATGTCTGACAGACAGACATCAGTGTTCTGTGCGTTCCTTCAATTATCTGCCTTTGCGCCAT
ACTACTATGCGTTGCTTTGCAAATGTGTAAGGGGCAACAAAATAAAGTGTTAACATGCTACTTCGATGTTGCCTCATGCC
ACTGAACTATTCTAGTTCTCAGGTCTCAATAAAGTGT--------------TAAGCATGAACTGTTCTAGTTCTCAGCTC
TCAACTAGTTTAATACACATATTAATGTGGCTGAGCATGAACAATTGAGCATCTATAGAGGCACATGATACATGTAGTTT
GCTGTGTTGCAAGGTCACAGCTGAAAATTAACTCATGTGTTCTGTCTAAATAGCCATTTC
>chr5D_969
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-----------------CCGCGGCGGCGGAGGCGGCGGGCCGGGT-CCCATGGCGCAGGCCAAGCGGTACGTGCTGCGGC
TCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCGTGGTCACCGCCTCCACCGTC
GAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCCGCCGTCGGCGAGGTGCTCGC
CATGCGCCTCCGGGTGGATGGCCTGGCGCACGAGCCCATCCACGCCGACGCCGCCAAGGAGGTCGAGAAGAAGGGCTTCA
AGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCCACGTCGACGACGACGGCGAC
CATAGGCGGCATGTCTGACGAGCATCAGTGCGTCTCTTGAACCCTGC-C-TCCGTGCCTGTCATTTGTTTACG-------
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------------------TGTGTGTTTTCATTTGCAATGTGCAGGAGGCTAGTAAAAAAGTGCAGAAATTTTAGTGCTTT
GATTGTAACATGCTGTTCAATGTTGTCTCACTATCCTAGTCTCAGCTCCCAGATAATTTGATACTCATGTTATTAAGGCT
GAACCAGTGAACATCTACGGAGGAAATGCTGCATTTAGTTTGATTTGTTGCAAGGTCACTTCTGAATCTTAACTTGTATC
TAGACAGAGGCAACTCTGCAGTGTTTCTGAATCACTTTTCAGTAAAAAGAAAAGAAATGCAGTAAAAAAAAAATGCACAA
AAAGATCAAGCAGGGTTACTGCTGTAGTGGTTGAAATTTATACCCCATGTCTTGTTGTCACCTCAGGCAACAATACTGTA
ACATCAGCCATCTGAGATGCACGAAAACCTCAAGAATGTTTTGATTTGCATACTTCTGTAGCTAACAACAAGGTTTACAC
CGAACATGCTGTTATTTTTTTTTAGAAATGGAGGAAGACCCCCGGCCTCTGCATCTGGACATGCTGTTCAATGTTGCCTC
ACTGTCCTAGTCTCAGCTCCCAGCTAGTTTGATACTCATGTTATTAACTCTGAACCAGTGAACATCTACAGAGGAAAATT
ATACATTTAGTTTGATTTGCTGGAAGGTCATTGCTGAATCTTAACTTTTTACTCTCTAAACAGAGGAAACTCTGCAATGT
TTCTGAATCACTTTTCAGTAAAAAGAAATGAAATGCAGTAAC--AAATGAACAAAAAGATGAAGCAGGGTCACTGCTGTA
GTGGCATGGAAATTTATACCCCATATTTTGTTGTCACTTCAGGCAAGGCATCTCAGATGCACGAAAACCTCAAGAATGTT
TTGATTTGCATACTAGCTAACAACAAGGTTTACACCAAACATGCTGTTATTATAATAGCATCTACCTCCGACTCGACGAT
GATGGTGAACATAGGT-GCATGTCTGACAGACAGACATCAGTGTTCAGTGTGTTCCTTCAATTATCTGCCTTTGCGCCAT
ACTACTATGTGTTGCTTTGCAAATGTGTAAGGGGCAACAAAATAAAGTGTTAACATGCTACTTCGATGTTGCCTTATGCC
ACTGAACTATTCTAGTTCTCAGGTCTCAATATAGTGT--------------TAAGCATGAACTGTTCTAGTTCTCAGCTC
TCAACTAGTTTAATACACATATTAATGTGGCTGAGCATGAACAATTGAGCATCTGTAGAGGCACATGATATATGTAGTTT
GCTGTGTTGCAAGGTCACAGCTGAAAATTAACTTATGTGTTCTGTCTAAATAGCCATTTC
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--S-S------SSS---S------S---------S-----S-S----SS-----SS---------S----S-------
S--S----S------------S--------------------S-----SS----------------S----S-SS---SS
SS-S-S-SS--SS---------S--------------------------------------S------------------
----S-------S-----------------S----------S--------------------------------------
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-------------------S-S---------------S------------S-----------------S---SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------------SSS---S--------------S---S-------SS-------
--------------------------------S-------------------------------------------SS--
------------------S-------------------------------------------------------------
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--------S----------S--S------------------------S----------S-------S-------------
-------------S--------------S------------SSS-----S--------S-S---------S---------
-----S--------------------S----------------S------------------------------------
----------------------------------S-----------------------------------------S--S
--S-----S-S-----------------------S----------------------------S----------------
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--S-S---S--------------------SS-SS-SSSSSSSSSSSSSSSS--------------------------S--
--S-S-S-SSS--------------------------S-------------S---S------------------------
---S-S------------------------------------------------------
>forward_628
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------------------------------------------------AGAGGTGAGGGCTCATTTGC------------
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>reverse_1528
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-------GAGGGAGTACATGTGTGCGT-----------------------------------------------------
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