>input_sequence_82429
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---------------------------------------ATGGAGAAGCTGACGCCGAGCAACGCGAAGAAGGCGATGGA
GGGCAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCCAGACGACAGCCTCGCCGACCTCGCCGCCGGGCAGCGGCAGC
CGCAGCTGCAGCGGGAGCGGGAGCACCAG------GCGCCCAACATCTCGGAGATGAAGCCGATGACGCGCGAGGCGTAC
GGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGGAGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGG
GCCGGAGGAGCCCGTGGCCAGGCCCAGGCACCCTCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCATGT
CCTACATCCAGTAG------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G500800
AGACGGCATGATCTTCAACATCGTTCAGAGATCGTCTGTGCACTGTTGTGTGTATAGCAAAGGTTCTTTTGCCCCTCTCC
CACTCCCAAAATACTCCTACAAGATCTTTGCCTGGCTAATTAAACAAAATATAGTTTGGACGGGGACCGCCTCGCCAAGC
ACGGCTGCCCAAACTGCATCCAATGCCCTCTTTGTAGCTGCGCCCGGGAGACGGCGGCGCACATGACCTTTCAACTCTGC
TACTTCATCCGGATTTGGAACATGGTGAAGGATTGACCTAGACTTCACATGTTTGACACTGTCTCCTGTAACGGCGTCGT
CAATGATAAGTGTTGTGCTGGTGGGACTCCCTCATACACCATGATATCCCTAAGCGTAAGGCGATGGCGTCCCTTGCAAT
GTTGGTCACATGGAAGATTTAGAACAAGCATACCATAACCCGCGTGTCTTTAACCACAAGCAGACCCCTCCATCAATCAT
CATCCGGCGCATCCGTAGCGAGGCCACCTTGTGGGTTGCAGGCGGGGGCTAAACATTTGGGTGTTGTCCTCCTTGAGAGA
ACAGGTTTTTCTCCTCTTTTTCGCACTCGCGCGATTGTTCTGTGACACTCTTCTTAATTGAAGAATGTGGCAAATCTTTT
TCCACTTCAAAAAACAAAAAGAAAAAACACTTGCCGCTATGGTCCAGTTAAAATGGCTGTTGTGCAGAGCGGCCGCTTCG
CTTAACATGTGGACGCGGTCCTCCTCCGGCCCGGAGTAGTTGCATTTCGTGGCCAAGTTCGCCAATCCAAGCACGGCACA
AGGATGCG--------CACCTATCCATATGCGCCGGCACATGCAGCTCTATCCACGAGACCTTCCCTCCCG---------
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----------------------------------TCCCGATCCATCATC---CGATCCAACCCGATCCAACGCTTACCTA
TAAAAGCAAGCCCGCCAGAACCATCACCCA-------------------CACTGTTAATTTCTACTAC-AGCCAAAGCTT
GTGCCAGCAGAGACCGATCGAGTCGAGCGGA-----GCGATGGAGAAGCTGACGCCGAGCAACGCGAAGAAGGCGATGGA
GGGCAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCCAGACGACAGCCTCGCCGACCTCGCCGCCGGGCAGCGGCAGC
CGCAGCTGCAGCGGGAGCGGGAGCACCAG------GCGCCCAACATCTCGGAGATGAAGCCGATGACGCGCGAGGCGTAC
GGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGGAGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGG
GCCGGAGGAGCCCGTGGCCAGGCCCAGGCACCCTCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCATGT
CCTACATCCAGTAGGC---AGTCGGTAGCTTTTCTTCCTCC---TGCGTGTCCGTGTGTTTGGACGGTGTGGAGCGTGTA
GAAGTTGTGCCTTGTA------CGTGCGTCTACTACAGCTGCCGTTCTTTGTGT--TTTTCCTTTGTGCATGGCTAACGA
------ATAAAATGTGAGCGCAAATTTTCTTGCCCTAGCCTGC----------------------------ATAGTATGG
AAGGTCATGGTATGGATGCATTGAACCTCTCTGCGGCTCTGCCGGTAAAGAAACAGGCACACTGTACAAAATATGACGCG
CCTGAAGAATAGCAAACACTGTCAGAGCATCTCCAGGTGATGAAAAAACGCCGATGTATAAAAACTGCCGACTAGGACAC
TATAGGCCAAAAGCACTGTTTCAACAGGTCACATGTATATATGGTGATGCAAAAAAT-TTGGACGCCTATAACTGTTGGC
AAGCACGACAAATTTTTCATCTAAACTTGCCATGGTCAACAACCATAAATTGCCAAAAAAAAATTGAGTTGCCATGGTCA
AATCCCGAACGTTTTGGGATTTATCTTTTCCGAATTTTGTTGGCAGCCTCAAATTTTGGCTTCAACTGCTGCATATTTGC
AGCGCCTCTACTAGTCTACTTGCTTCAACTGCTGCAAATTTGCAGTGCCTCTACTTAATGTAGCAAAACCAAACATCACC
CCGTCGCCCATTCCTGCCGAACCTATACTACATTCTTGCCGAACCTATACTCTATTTCTCTTAATTTGTGCCACCCCAAA
TAGTATTTCTTTCATGAAGTATACATGGGACTATGGGATTGGGATCCCCAAATAGTATTTCTTTCATAAAGTATATATGG
GACTATGGGATTGGGATTCAGCGGCCAGTCACGCCGTAACTGACGGGTAGCCCACCGTTGGATGAGGGGGGCGGGCTAGA
TAAATCTTGTATTGTTCACGCGCATCTGTCCGCTGATTTTAGATCAGACAGTTTGGCGAGAGGAACAAGTCACCGTACTG
TTCACTGATGACTAGCCTCAATC
>chr4B_727
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------ATGTCGACGCGGTCCTCCTCCGGCCCGAAGTAGTTGCATTTCGTGGCGAAGTTCGCCAATCCAAGCACGGCACA
AGGATGCTCAGTTGCTCACCTATCC--ATGCGCAGGCACATGCAGCTCTATCCACAAGCCTTGCTGCTTTTGTCGCCGGC
CGTGACGTCCACGAGTCACCCTTCGCCGCCGCGCGAGGTACCGACCAGCCCAGGTGTGCGCCGCGCGGGGGTACCACGCA
GCCAACCGTACCACAGCGCCCACAGCCAGCGCTCGCCCGGCCTACAGGCGACACGCGTTGCCCCCACTGCGCAGCACGCA
GGCAGTGCACGCACACGAACATCGCGAGTCTTCCTCCCGATCCATGCATCATCGATCCAATCCAATCCAACGCTTACCTA
TAAAAGCAAGCCCGCCTGAACCATCACTTCACTGCCAGTCTTGCTCAGCCACTCTTAATTTCTACTACCAGCCAAGTTTT
GTGACAGCAGAGACCGATCGAGCCGAGCCGAGCAGCGCGATGGAGAAGCTGACGCCGAGCAACGCGAAGAAGGCGATGGA
GGACAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCCGGACGACAACCTCGACGACCTCGCCGCCGGGCAGCGGCAGC
CGCAGCTGCAGA------GGGAGCACCAG------GCGCCCAACATCTCGGAGATGAAGCCGATGACGCGGGAGGCATAC
GGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGGAAGCCGCGGGCCAGCGCCACGCAGAGCGCCGACGG
GCCGGAGGAGCCCGTGGCCAAGCCCAGGCACCCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCATGT
CCTACATCCAGTAGGCGGTAGTAGCTAGCTTCTCTTCCTCCTTTTGCGTGCCCGTGTGTTTGG-----------------
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>chr4D_950
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--------------------------------------------------------------TACTAC-AAGCCAAGCTT
GCTACATCAGAGACCGATCGTGCCGAGCGGA-----GCGATGGAGAAGCTGACGCCGAGCAACGCAAAGAAGGCGATGGA
GGACAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCCGGACGACAGCCTCGACGACCTCGCCGCCGGGCAGCGGCAGC
CGCAGCTGCAGC------GGGAGCAGCAGCACCAGGCGCCCAACATCTCGGAGATGAAGCCGATGACGCGGGAGGCGTAC
GGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGGAGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGG
GCCGGAGCAGCCCGTGGCCAGGCCCAGGCACCCCCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCATGT
CCTACATCCAGTAGGCGGTAGTAGCTAGCTTCTCTTCCTCCTTTTGCGTGTCCGTGTGTTTGGACGGTGTGGCGCGGGTA
GTAGTTGTGCTTTGTATACGTGCGTGCGCCTGCTAGAGCTGCCGTTCTTCGTTGTGTTCTCCTTTGTGCATGACTGACGA
ATAAAAATAAAATGTGAGCGCAAATTTTCTTGCCCTTGGGCCGTTCTGACAGAGTATGGCAACTAGCCGGTATAGTATGA
AAAGTCATGGTACGAAGGAAATGAACCTCG--------CTGCCGCTAAAGAAACAGACACCCTGTACAAAATATGACGCG
CCTGAAGAATATCAAACACCGTG--------TCCAGGTGATGAAAAAACGCCGATGTA--AAAACTGCCGAGTAGGACAC
TCAAGGCAAAAAACACTGCTTCGACAGGTCAAATGTA---ATGGTGGTGCAAATTTTGTTGGACGCCTATAAC-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S----------------------S-------------------S--------------------------
-------S-----------------SS------S---------------------S--S-S-S-SSSSSSS---------
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---------------------------------------------SSSS-----------S--S----------------
----------------S----------SSS-----------------------S--------------------------
---S------------------S---------------------------------------------------------
--S------------------------------------S-------------S--------------------------
------------SSSSSS----------------------------------------------------S---------
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---------------------------------S----------------------------------------------
----------------------S-S------S----------------------------------------S---S---
-S--------S-----------------S--S---S-------------S--SS----S-------------S--S----
------------------------------------S-SSSSS------------------------------------S
--S---------S-S-S-S-S--------SSSSSSSSS------S-----------S---S-------------------
-----------S-------S--SSSSSSSSS---------------------------SS-----------S--------
-SS----S----S-----S---S--------S-----SSS------S------SSS-----------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_52
--------------------------------CGTCTGTGCACTGTTGTGTG----------------------------
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>reverse_2201
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----------------------------------------TGGCAGCCTCAAATTTTGGC--------------------
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