>input_sequence_82418
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------------------------------------------------------------------ATGGAGGATGACAA
GAAGGAGGGCAAGTACCGCGGCGTGCGGAAGCGGCCATGGGGCAAGTTCGCGGCGGAGATCCGAGACCCAGAGCGCGGGG
GCTCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCGCGCGCCTACGACCGTGCCGCATTCGCGCAGAAG
GGCGCCACCGCCATCCTCAACTTCCCCGGCGAGGCTGGCAGGATGAGTGGCGGGTCTTCTTCGTCGTCGGCCGCCGCTCA
GGCGGCCGCGAGCAGGCGCGTCCCTGACACGGAGAAGGTGGAGCTGGAGTACCTCGACGACAGGGTCCTGGACGAGCTCC
TCGCGGAGGACTACTACAGCACTAAGAAGAAGTAG---------------------------------------------
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>chr4B_1_TraesCS4B01G316800
CGGCACAGTGATGCACGGTGCAAGCTGATTCCCAGTGCATGCATCCCCAGTGCTCCAATTCCGTCCGTCCGTCCGTCCGT
GACATGCATGCAGATCTGATTGCATGCCTAGCTAATGGTCAAT-------AAATGACGACGACGACATAGATACACAGAC
CTACCTGTAAGGTCGACCGATAGACATAGAC------GATGGAGCTCAGCTGGCTGGTGGCGCCGGCGTGCGAAAATTCT
CCGTCCGTGC--GGGGGCTTGCTTTTCTCGGCTTAGTCCCGCCGTCCGGGC--CGCGCCCCCACGTGAACCGGGATTCCG
ATGCCCCCGCTTTCCAGCGCCAGTCCGCCGACGTACGCATCGGCATCCGTCGAGCGTCACGCCCGGCCACGCACCAGGAT
GGAATGGAACTCACGCGCG--GGCGCAGGCGCAGTCGCCGCCCGCCCAATCTCCATACATCTTTAACTGTCGGGGTCATG
TCGATCGATCGATCACCAGTAAATTCAAACTGACATAGCTTTCTCG------------ATCGATCGGAGAATATGCATTC
CCTATCCCATCCCAACTGCGTGATTGCGGCTGATTATTCGTCCATGTCGATC----GACCAGCCCGTCGCGGTAGTAGAA
TGGCCTACGGCCTAGCTGCCGAGACTGGTCAGCAGAGCGCGCCCGGTAGTGCAGTGCAGCTATGGCCTGCCTTGTG----
------------------TGGTGATGTGATCGTAAGATAGATAGATA--------CGCCTGCGCGCATGATGCAAACGCC
CTAAGCTAGCTCGCTCGCTA--GCTGCTGCATGCACCGCCAATTCT---GTATAAATAGCC----AGCTGCACCTGCATA
TGCCGGCAGCCACATATACGCAGCT----AGCTACGAGTATCTACATA--------GCTAGCAAGCTAGATACTAGTGCT
ATCTAGCTCCTTCTAGATTATAACCTCACCAAGCTATAGCTGCATCTGCCCTGCCTGCATG----CGAGCTGGTTAAGTG
AGCGCTGCTGCCTGCATAT-----AGACCGACCCTCAGCAAGCTAGCAATAGCAC-----------ATGGAGGATGACAA
GAAGGAGGGCAAGTACCGCGGCGTGCGGAAGCGGCCATGGGGCAAGTTCGCGGCGGAGATCCGAGACCCAGAGCGCGGGG
GCTCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCGCGCGCCTACGACCGTGCCGCATTCGCGCAGAAG
GGCGCCACCGCCATCCTCAACTTCCCCGGCGAGGCTGGCAGGATGAGTGGCGGGTCTTCTTCGTCGTCGGCCGCCGCTCA
GGCGGCCGCGAGCAGGCGCGTCCCTGACACGGAGAAGGTGGAGCTGGAGTACCTCGACGACAGGGTCCTGGACGAGCTCC
TCGCGGAGGACTACTACAGCACTAAGAAGAAGTAGCTAGCTAGCTAGCACGCACACCCGAAAGAAGAAGAATAAGCTACT
ACTACTCC-----TAATTAAGCTGCTTGGAGTCAAGGAGGAGAATGGTCTTCG----TTGGTTTGGTCGGTGGGTGCATG
GCAGGACTAGTCATGGCTTGCATGGACACAC--TCACACACGTGTAGAACAAACCACTGAC-------ACGTCCTTTGTC
CTGGCGAGCCCATGCAGCGTGCTTTAATTTGTTACCGACAAGATGGAACGAAGTAATTAATGGGTATAT-----------
-----------------ATACGCAAATGAAAGTAATTTATTTTTCTGCAAAGACGTGTGTGTACGTACAATGGTCGCATC
AAATCTATAGTATACTGCATTTACCCATGTTCATTTTTTTCCC----------TGGCTAAAAATGGTGCCTATAAATTTT
GTCATGGATTTTTCACCAATTTTTACGAGTCTTC--TCTTCTGGGAAGGAAGGATAACAAT----------------GTC
CACTCCATGCTGTGATTTACCCACCATCG-TCAAGCTCGCTTGATAAATCGTCGACCGCTGGTCAATGTTCGGTCGCAGC
TAGCAACAAAGCTGATTCCCCGACAGTGGCACGCACGAAAAACACAGGCCCAAAAAAGAAGTGAATCCTCGGTTGCCAGC
CCCGCCTTCAGAATCATCAGTACTTGTCACAAC---------ACGTCGCGGTCCTGCGTGGTAACAGCACTCTATTGATC
GACCAGGCGCCATCCTGAACCGAACCGCGTACGAGGTTAAGGGCCTCTCTGATTTTTATAGGTTTTCGATTCGAGGATTG
AAACCCTTACGAAAAA----------------------------------------------------------------
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------------------------------------------------------------TTTCTTTGCCGGTCGTTTGA
TTTGCTATACTGAATCAT--------------------------------------------------------------
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---------------------------------------------------------------------------ATAGA
AGTTTTGTCTACATATTCCTTTTACGA--------------------AAATTATGCATTCACTAAATACTCTTGGAATGA
ATCATCATTTTT-TTTCTTTGATACAATTAAACAAATCAATTCCTATGGAAGTTGGATAGACATGACCAAGAAAAACAGA
TAGACACCATATTGCAATCATGTGTTTCTTCTATTGCGTTT
>chr4D_1
CGGCACAGTGATGCACGGTGCAAGTTGATTCCCAGTGCATGCATCTCCACTGCTCAAATTCCGTCCGTCCGTCCGTCCGT
GACATGCATGCAGATTGCAA------CCTAGCTAATAGTCAATCGGAAGAAAATGACGACGACGACATAGATACACAGAC
CTACCTGTAAGGTCGACCG------ATAGAC------GATGGAGCTCAGCTGGCTGGTGGCGCTGGCCCGCGAAAATTCT
CCGTCCGTGC--GGG--CTTGCTTTTCTCGGCTTAGTCCCGCCGTCCGGGT--CGCCCC--CACGTGAACCGAGATTCCG
ATGCCCCCGCTTTCCAGCGCCGGTTGGCCGACGTAGGCAACGGCATCCGTCCAGCGTCACGGCCGGCCACACACAAGGAT
GTAATGGAGCTCACGCGCGCAGGCGCAGGCGCAGCCGCCGCCCGGCCAATCTCCACGCATC-TTTACTGTCGGGGTCATG
TCC----ATCGATCATCAGTAAATTTAAACTGACTTAGTTTTCTCGATGGATCGATCGATCGATGGGAGAATATGCAT--
---ATCCTATCTCAACTGCTTGATTGCGGCTGATTATTCGTCCATGTCGATC----GACCAGCCCGTCGCGGTAGTAGAA
TGGTCTAAGGCCTAGTTTCTGAGAATGATCAGCCAAGCGCCGTAGTGCACT-AGTGCAACTATGACTTGCCTTGCGCGCG
CTTGCTAGCCAGTTGCGCTGCTGATGTTACCGTAAGGCACATACGC-----------------CGCATGATGCAACC---
-----CTAGCTCTCTAGCTGCTGCTGCTGCATGCACCGCCAATTCTCGTGTATAAATAGCTGCCTAGCTGCACCTGCATA
TGCCGGCAGCTACATGTATGCAGCTAGC------------------TA--------GCTAGCAAGCTAGATACTAGTGCT
ATCTAGCTCCTTCTAGATTGCAACCTCGCAAAGATATAGCTGCATCTGCCTTGCCTGCATGCACGCGAGCTGATTAAGTG
AGCGCAGCTGCCTACTTGCTGATCCCTTCTCCT---AGCTAGCTAGCAATACCGAATTAGCATCATATGGAGGATGACAA
GAAGGAGGGCAAGTACCGCGGCGTGCGGAAGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGGGACCCGGAGCGCGGCG
GCTCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCGCGCGCCTACGACCGCGCCGCATTCGCGCAGAAG
GGCGCCACCGCCATCCTCAACTTCCCCGCCGAGGCTGGCAGGATGAGTGGCGGGTCTTCTTCGTCGTCGGCCGCCGCTCA
GGCGGCTGCAAGCAGGCGCGTCCCTGACACGGAGAAGGTGGAGCTGGAGTACCTCGACGACAGGGTCCTGGACGAGCTCC
TCGCGGAGGACTACTACAGCAGCACTAAGAAGTAGCTAGCTAGCTAGCACGCACACCCGAA---CGAAGAATAAGCTACT
ATA----C-----TACTAAAGCTGCTGGGAGTGAAGGAGGAGAATGGTCTTCC----TTGGTTTGGTCGGTCGGTGCATG
GCAGGACTAGTCATGGCTTGCGTGGACACAC--TCACACACGTGTAGAACAAACCACTGAC-------ACGTCCTTTGTC
CTGGCGAGCCCATGCAGCGTGCTTTCATTTGTTACCGCGAAGATGGAACGAAGTAATTAATGGGTATAT-----------
-----------------ATACGCAAATGAAAGTAATTTATTTT-CTGCAAAGATGTGTGTGTACGTAAAATGGTCGCATC
AAATATATAGTATGCTGCATTTACCCATGTTCTCTTTTTTCTTCCCTTGGCTATGGCTAAAAATGGTGCCTATAAATTTT
GTCCTGGATTTTTCACCAATTTCTACAAGTA-TATATCTTCTGGGAAGAAAGGGTAACAAT----------------GTC
CACTCCATGCTGTGATTTACCCACCATCG-TCAAGCTTGCTTGATCAATCGTCGAT--CTGGTCAATGTTCGGTCGCAGC
TAGCAAAAAAGCTGATTCCCCGACAGTGGCACGCACGAAAAACACAGGCCCAAAAAAGAAGTGAATCCTCGGTTTGCAGA
CCCGCCTTCAGAATCATCAGT----------AC---------ACATCGCGGTCCTGCGTAGTAACAGCACTCTATTGATC
GACCAGGCGCCATCCTGAACCGAACCGCGTACGAGGTTAAGGGCCTCTCTGATTTTTATAGGTTTTCGTTTCGAGGATTG
GAACCCTTACGAAAAT----------------------------------------------------------------
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------------------------------------------------------------TTTCTTTGCCGGTCGTTTGA
TTTGTTATATTGAATCAT--------------------------------------------------------------
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---------------------------------------------------------------------------ATAGA
AGTTTTCTCTAAATATTCCTTTGTACTATATTTCATGTTCAA--GAGAAATTATGCATTCCCTAAATACTCTTGGAATGA
ATCATCATTTTT-CTTCTTTGATACAATTAAACAAATCAATTCCTATAGAATTTGGATAGACATGACCAAGAAAAACAGA
TAGACACCATATTGTAATCATGTGATTCTTCTATTACGTTT
>chr4A_33
--------------------------------CAGTGCATGCATCTCCGCTGCTCAAATCCCGTCCATCCATG----CGT
GACATGCATGCAGATGCATGTG--------GCTAATAGTCCATCATCGGGAAAAAATGACGGCGACGTAGATACACAGAC
CTACCTGTAAGGTCGACCG------ATAGACATAGCCGATGGAGCTCAGCTGGCTGGTGGCGCCGCCGGGCGAAAATTCT
CCGCCCGTGAGGGGG--CTTGCTTTTCTCGGCTTAGTCCCGCCGTCCGGGCCGCGCCCC--CACGTGAACCGGGATTCCG
ATGCCCCCGCTTTCCAGCGCCGGTCGGCCGACGTACGCATCGGCATCCGTGGAGCGTCACGGCCGGCCACGCACAAGGAT
GGAATGGAGCTCACGCGCGCGGGCGCAGGCGCAGCCGCCGCCCGCCCAATCTCCTTACATCTTTAACTGTCGGGGTCATG
TCGATCGATCGATCACCAGTAAATTTAAACTGACGTACTTTTCTCG------------GTCGATCGGAGAATATGCATTC
CCTATCCCACCCCAACTGCTTGATTGCGGCTGATTATTCGTCCATGTCGATCGATCGACCCGCCCGTCGCGGCAGTAGAA
TGGTCTACGGCCTAGCTTCCCAGAACGGTCAGCAGAGCGCGGTAGTGCACTG------------------CTTGTG----
------------------TGGTGATGTGATCGTAAGATAGGTAGATAGATAGATACGCCTGCGCGCATGATGCAAACGCC
CTAAGCTAGCTCGCTCGCTA--GCTGCTGCATGCACCGCCAATTCT---GTATAAATAGCC----AGCTGCACCTGCATA
TGCCGGCAGCCACATATACGCAGCTAGCTAGCTACGAGTATCTGCATAGCTAGCTGGCTAGCAAGCTAGATACTGGTGCT
ATCTAGCTCCTTCTAGATTATAACCTCACCAAGCTATAGCTGCATCTGCCCTGCCTGCATG----CGAGCTGGCTAACTG
AGCGCTGCTGCCTGCATACAGTACAGACCGACCCTCAGCTAGCTAGCAATAGCAC-----------ATGGAGGATGACAA
GAAGGAGGGCAAGTACCGCGGCGTGCGGAAGCGGCCGTGGGGCAAGTTCGCGGCCGAGATCCGGGACCCGGAGCGCGGCG
GCTCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCGCGCGCCTACGACCGTGCCGCATTCGCGCAGAAG
GGCGCCACCGCCATCCTCAACTTCCCCGGCGAGGCTGGCAGGATGAGTGGCGGGTCTTCTTCGTCGTCGGCCGCCGCCCA
GGCGGCCGCGAGCAGGCGCGTCCCTGACACGGAGAAGGTGGAGCTGGAGTACCTCGACGACAGGGTCCTGGACGAGCTCC
TCGCGGAGGACTACTACAGCAGCAGTAAGAAGAAG-----TAGCTAGCACGCACACCC-AA---AGAAGAATAAGCTACT
GTA----CTATAGTACTAAAGCTGCTTGGAGTGATGGAGGAGAATGGTGTTCGATCGTTGGTTTGGTCCGC----GCATG
GCAAGACTAGTCATGGCTTGCATGGACACACGCTCACCCACGTGTAGACTAAACCACTGACACGTACTACGTCCTTTGTC
CGGGCGAGCCCATGCAGCGTGCTTCAATTTGTTACCGCGAAGATGGAACGAAGTAATTAGTGGGTATATTACATATACTT
GGCTACCAAAAACTATGATACGCAAATGAAGGTAATATTTTCT-CTGTAACCATGTGTGTTTACATAAAATGGTCGTATC
CAATCTACCA-------CATTTACCCCTGCCCTCTTTTT-----------------------------CCTATATATTTT
GACATGGAAG-TTCACCAATTTGTACTGGCAGTATATGTTCTGAGAAGGAACGATAGCAAATTATAACAGTGTACACGTC
CCCTCCATTCTGTGATTTACCCACTATGCATCAAGCTTGTTTGATCAATCATCTATCGCTGGTCGATGTTCGGTCGCAGC
TAGCAAAAAAGCTGATTCCCCAACAGTGACACGCACGAAAAACACAGGCT-AAAAAAGAAGTGAATCTTCGGTTGCCAGA
CCCGCCTTCAGAATCATCAGT----------ACTTGTCTAACACATCGCGGTCCTGCGTCGTAGCAGCACTCTATCGATC
GACCAGGCGCCATCCTGAACCGAACCGCGTACGAGGTTAAGCGCCTCTCAGATTTTTATAGGTTTTCGA-----GGATTG
AAACCTTACGACAATTTTCTTTTCAGTTTAACTAAATGACAGGTGGACTGATTTTCGAATTGAGGTCAGTCGATTTTTGA
GAGTTTGCCGGAGTGAGCCCGAGGGAAGGAAGGGGCTCGCCGGAGTACCCTATTATCTATCTTACGGTTTATTTAGGGTG
GGGGCGGTGGTGTGGGGCTTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGCAGTGCGGGGTGGTTCCGGTGAGGGCGGGGCAGCGGCCACGGATGGTGG
TGGCCAGCGGTTCGGCTAGTGGAACGCTGGGAGAAGAAGGAAGAAGAAGGGCCGCGGGCTGTTAGATCTCCATCCGACGT
CTAGAATGAATCAACTGGCCGGATTTGAAAAACCAATCGACTGACGTGTAACCGCACCCTTTTCTTCGATGGTCGTTTGA
TCTGTTATATTGAATCATGCTAGCAAATATGCCCGTGTGTTGCAATAGGGAGTAATTTTTTTATCTAAGCCGTTATCATT
TCGGCTCAATTTTAATTTTGACTCGTCATATTGATGGCAAGCACCTACACCCACACTCAGTCAGTACCTTTGTGGTGTCG
TTTGACACTAAGGAGGCCGCGTCTATAGATTAAGTTTATACTAGAAATCCTACATGTATCACCATCACATGCAACAGATG
GAAGACAAATTAAGATTGTATTTATCGGTTGCACTATGAACGTGCATGACTATCACACAAATAGTTCGGATATTTTTGAA
ATAAACATTCATGTATCTGATATTCATGAATTTGATAAGTGTATGTACATCCTATAAAAATTGTTTGTGTATTCACTATA
AAAAAAGTGTACTCCGATGGTAAGTACGCGCGCGGATTTTGTAAAGAAAAAGTATGTACGTAAGGTCTTATCTCATGAAA
CATGTACAAAAAAAGAATCTGGTGCAAGTACAACATACCCAAGGATTATAATCTTTCCCAATTATTAACGTTCAATTGTA
CATATTGTAATACTGATCTGCGTCGATATGAAATAAAGGCGGATCATGCGCCATTGATTAACATTGTATCCTAAATATAA
TTTTAAAAATATTTAAAATATAAGATAACATCATATTCAAATTCTACATATTTTTTAATCAAATTTCATATATAACATGT
TAAAATCGGAGTTAAGGTTTAAAAGATATGGTTATTTGAAAATATTTATTTATTTTTAATAGACTGCGCTATGATTACCG
TAGATATCAGGGGCATTTATATTAAACTGCAAAAAACGACTCACTATGCCTTAATTCTGGACTGCGGGTTAATTAATGTA
AAATCCAGAGGTTTTTGTGTAAACAGCAAAAAACGGTTCGTTCTGACTTAACGATGAACTGCGGGTTAATTATTCAAAAA
GACATGACAGACGACCAGAAGCAATCGATGCTTTATTATATATATATATATATATATATATATATATAGGGACAGATATA
AGTCTTCCTTACATATTCCTTCGTACAATATATTTCATATTCATGAGAAATTTTGCATTCACTAAATACTCTTGGAATGA
ATCGTTTTTCTTCCTTCTTTGATACAATTAAACAAATCAATTCCTATAGAATTTGGATAGATATGGCCAAGGAAAAAAGA
TACACACCATATTGTAATCATGTGTTTTTTCT---------
>SNPs
------------------------S--------------------S---S-----S------------------------
---------------SSS-S--SSSS----------S-------------------------------------------
-------------------SSSSSS-------------------------------------------S-----------
---------------SS---------------------------------------S--SS-------------------
---------------------S---S-----------------------------------S------------S-----
--------S-------------------------S---------------------------------------------
-------------------------S--------S---S-----------------------------------------
-------------------S------------------------------------------------------------
---S-------------S------S----------------SSS-SSSSSSS------S-----S-S-------------
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-------------------------------------------S------------------------------------
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------------------S--------------------S----------------------------------------
------------------------------------S--------------------------S-----S--------S-
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---------------------SS-SS-----------------------------------SSS----------------
-SSSSSS--------S-S--------------S--------------------------------------S--------
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-------------------------------------SS-----------------------------------------
-------------------------------------------S---------S-------------S------------
-------------S------------------SS-------SS-------------------------------------
----------------------S---S---SS-S----------------------------------------------
-------------------------------------S-------S---------S------------------------
------S------------------------------------------------------------------------S
---------------------SSSSSSSSSS-------------S--------------S--------------------
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---------------S----------------------------------------------------------------
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----S----S----------------------------------------------------------------------
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------S---------------SSSS------------------------------------------------------
-------------S---------------------------------S---S----------------------------
--------------S--------------------S-----
>forward_580
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CCTATCCCATCCCAACTGCG------------------------------------------------------------
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>reverse_2160
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-------------------------------------------------------------------------------C
CCCGCCTTCAGAATCATCA-------------------------------------------------------------
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