>input_sequence_82408
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----------------------------------------------------------ATGGCCGACGTGGATGTTTCCG
GCGAGAAGACAACGTCGCTGATCATCGACACGGCGATTCAGACGGAAT------TCCAGTGCGACGCCGAGTCCGGCCCG
CCTGCCGGCGCAACCACCGGCAAGAAGAAGCGGATGCCCGCCCAGCACGTCAGTTACATCCTGGCCATGCCGACAGAGAA
GCCCGAGGAATTTGTCCTGCCCAACTTCCTCCGGGGCGACAGCAACATGGCGGAGAAGATGGGCGTGACGGAGGAGTGGC
TCGAGGATAGAAGGCGGATGTACAGGGAATCCGCCGTCCGTACCCAGAGGGTCCACGACGACTTCGTGAAGTACCAGGCA
CAGATCCGCGACGAGCTGTTCGAGAAGGGCTA-----A------------------------------------------
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>chr3B_1_TraesCS3B01G482300
ATGTTTCTCAAGTTTTGATGAACTTTTTTCAAATTCGGTGAACTTTTTGCAAATTCGATGAGCTTTTATCAAAATCCGCA
GAACTTTTTTCAAATTTGATGAACTTTTTTCAAATACGATGAAATTTTTTCAAATCCGGTGAACTTTTTTTTCAAACCCG
ATGAACTTTTTTCAGTTTTGTTCAAAATTTGGTTAACTTTTTTTAGATTTGATGATCTTTTTCAAATTTGTGAATTTTTT
TCAAATTCGTAATTTTTTCAGATCGATGTGTTTTTCAGTTTTGTGAACGAAGGGACGAACAGGAAAAAAAACTAACGAAT
GACGAAGGGAAGGAGCGAGCGATCGAAGAAGGGGAGCGTGCTAGCTGGGACGGCCCACGCGAGGCTCCTGCGTGAGCGCC
CGCTAAGGAGTGAAGTCTGAAATAAACCTTAAACTTGTAGAGCTCGACTAAAATAAACCTCGACGTCTAAATCCCTGAAA
TCTGTACTCCGACCTTTTTGATCCCAGTTGTTTTGAACCTTCCGCTGTTTTTAGGACATGATTTGATGACATGGCACTGG
GAGGCTGGGATCTCTGACTTTGACCAAATTAGTCGATGCAGAAGCCGGTGAGAGTGTCGGCAGCTCGCTCGCCGGTGTAG
GAAGCAGTCTGTGCCGCCATGGCTAGCACCGTGAAGGCGCCGAAGAGGAGGTCCGGCGAGCAGCGAGTCCCCGAACTTTT
TTTTTTTTTGAGATAAAGCGAGTCCCCGAACTGGTCT---------------GCTGCGGGCGTGGCCTGGACACGCCAAC
GGGCGTCTAATAGTTTGCCAGAAAAAA-ATATAGAAACAAACAGAG--GTGGGCCGGCCCAGTTGCAGTCGTCTCCGATC
CGGTCGGTTACTGGAGTTGGGGTCCGAGTATGTCTAGGAGTTTCGTTCCGTTCCTCCATATAATTGCGCGAGATCGATCC
TCCTCGCCACCCCCAATCGATCAAGACCCGCAAACCGATCCACAGGAGCCGAGGAGCAATGGCCGACGTGGATGTTTCCG
GCGAGAAGACAACGTCGCTGATCATCGACACGGCGATTCAGACGGAAT------TCCAGTGCGACGCCGAGTCCGGCCCG
CCTGCCGGCGCAACCACCGGCAAGAAGAAGCGGATGCCCGCCCAGCACGTCAGTTACATCCTGGCCATGCCGACAGAGAA
GCCCGAGGAATTTGTCCTGCCCAACTTCCTCCGGGGCGACAGCAACATGGCGGAGAAGATGGGCGTGACGGAGGAGTGGC
TCGAGGATAGAAGGCGGATGTACAGGGAATCCGCCGTCCGTACCCAGAGGGTCCACGACGACTTCGTGAAGTACCAGGCA
CAGATCCGCGACGAGCTGTTCGAGAAGGGCTA-----AGGTGGACGACGACTACTTCACCGACAGGGCTGAGATCCAGGA
AGAGACCAGGGCGAGGTGGGAAGAGTTGGAGAAGAAGCGAGACCCCGCTATAGAATTCGTGAACTACGGCAGCGATTCCA
GTGTTCCGTATGACTACGAGGAACAGGCGAGGCGCCTGGTCGCTCTCTGAGGGGAACTTCACGCTTGAATTAATCCAACT
GGGAAGATCGAGTCGTCTGTCTTGCTTCATGTTTCTATCTAGCTATCTTTAACAATCATCCATGTT--------------
---ACCATGTATCTATCTATGTTACTGAATACT-----------------------------------------------
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---------------------------------------------------------TATTTCGTTACAGTTCCTGATTC
TTTTCCTTTCTTAATGAAGAAGCAAATAAATGTTGTTTTCTTGACAAGATTGAGTGGCTGGACTTTGTATTAGCTAGCTT
CATGTTAGGCTTATTAGTCATACTAATTTATGGACCAGCTTAATAGTTTTTGTCGCATCTACTTGATGTACTAAAGCATC
ATGGGGTTTTATGAATTTAATAGGTTACTAGTTACCACGGT--TTTGCATCAATTCTCTGTTTGCCGCCACTTTCGCTGG
CGAATTCATGAAAAACTTCAATATGCCAAACAATTAATTAGGCATGTTCGGCTTCCTTTCGTATTGGTGCGTCATGCAGG
TGCAAGTGTTGAGGCGGTCGGCGACAATGGTCAAACACGTCGCGGAAAAGGCACCGTCACGTGCAATGTAAGAACTTGAT
TGTTTGGTGTGGCGCCGAGGGACCAGACGCGGAAACATTAGTTTTTTCGATGCCACCAGAGCAATACATTTTTTTTTTGT
ATAGATCTAAAACATTGTTTCTACACATGTTTAACATTTTTTTCAAGAGTATGCCAAAGACGTACCGTATTTTTATAGAA
GAAAGAGGCAATTTTTACAAGAGACTTGACGGATGCGAACATCGTCACGTTTACACCAACTCCAACGGAGGAAGAAAAAA
CCTACTCTCTCACGAATCTAGCTAAACCCACAACTCCTACC
>chr3A_698
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---------------------------------------------------------GAGCAGCGAGTCCCCGAACTTTT
TTTT------AGATAAAGCGAGTCCCCGAACTGGTCTGGTCCAACTCGCCTCGCTGCGGGCGTGGCCTGGACACGCCAAC
GGGCGTCTAATAGTTTGCCAGAAAAAATAAATAGAAACAGACAGAGAGGTGGGCCGGCCCAGTTGCAGTCGTCTCCGATC
CGGTCGGTGACTGGAGTTGGGGTCCGAGTATGTCTAGGGGTTTCGTTCCGTTCCTCTATATAATTGCGCGAGATCGATCC
TCCTCGCCACCCCAAATCGATCAACACCGGCAAACCGATCCACAGGAGTCGAGGAGCAA-------CGTGGAGGGTTCAG
GCGAGGAGAAGAC------GATCATCGACACGGCGATGCAGACGGACGTCCAGGTCCAGTGCGCCGCCGAGTCCGACCAG
CCTGCCGGCGCAACCACCGGCAAGAAGAAGCGGATGCCCGCCCAGCACGTCAGTTACATCCTGGCCATGCCGACAGAGAA
GCCCGAAGAATTTGTCCTGCCTAACTTCCTCCGGGGCGACAGCAACATGGCGGAGAAGATGGGCGTGACGGAGGAGTGGC
TCGAGGACAGAAGGCGGATGTACAGGGAATCCGCCGTCCGTACCCAGAGGGTCCACGACGACTTCGTGAAGTACCAGGCC
CAGATCCGCGACGAGCTGTTCGAGAAGGGCTACGTGGAGGTGGACGACGACTACTTCACCGACAGGGCTGAGATCCAGGA
AGAGACCAGGGCGAGGTGGGAAGAGTTGGAGAAGAAGCTAGACCCCAATATCAAATTCGTGAACTACGGCAGCGACTCCC
ATGTTCCGTATGACTACGAGGAGCAGGCGAGGCGCCTGGTCGATCTCTGAAGGGAACTGCACGCTTGAATCAATCCAAGT
TAGAAGATTGAGTCGTCTGTCTTGCTCCGTGTTTCTATCTAGCTATCTTTAACAATCATCCATGTATCTACCTATATTAG
TGAACCATGTATCTATCTATATTTTTAGTACTCCAAAACTAATTAAGTCGTGTTTGATGATCAATTAGTTATCTAGCTGC
TGGCCATGTAAAGTATGCAATGGGTGTTTGGCCCCTAATTTAGACCTAGGAGTGATATTAGTTGTCAAGTTTATGTAGTT
TGAGTCTACTTCACGCCATGTTTTCTGTTTACTCAGTTATAATTGTTTGCAGAATACTATTTCGTTAGAGTTCCTGATTC
TTTTCTTTTCTTAATAAATAAGCAAATAAAGGTTGTTTTCATGACAAGATTGAGTGGCTGGACTTTGTATTCGCTGCCTA
ACAGGCTAGTCATAT----ATAGTAATTTTTGGACCAGCTTAATAGTTTTTGTAGCATCTACTTGATGTACTAAAGTATC
ATGG--TTTTATGAACTTAACATGTATATGTAGGTTACTAAAGTTTGCATCAATTCTCTGTTGGTCGCCACTT-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
----SSSSSS----------------------------------------------------------------------
-----------------------------S---------S----------------------------------------
--------S-----------------------------S-----------------S-----------------------
-------------S----------S---S-------------------S----------SSSSSSS------S-S---S-
-----S---SS--SSSSSS------------------S--------SS---------------S-----------S--S-
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------S--------------S----------------------------------------------------------
-------S-----------------------------------------------------------------------S
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--------------------------------------S-------SS---SS----------------------S---S
S---------------------S-------------------S-------S-------S-----------S-------S-
SS------S-----------------S-S------------------------------------S--------------
--------------------S--SS-SSSSSSS-----------------------------------------------
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-------------------------------------------------------------------S------------
-----S---------S--S-----------S---------S------------------------------S---SS--S
SSS-SSSS-SSSSS-SSSS---S------S-----------------------S----------------------S---
----SS---------S----S-S--SSS-SSSSSSS--SSS---------------------S-S--------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_356
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----------------GAGCGATCGAAGAAGGGGAG--------------------------------------------
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>reverse_2270
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-----------------------------GTCAAACACGTCGCGGAAAA-------------------------------
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