>input_sequence_82389
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-----------------------ATGAGCTACTCCGGCGGCTGCTCGACGTGCCTGGAGATCGTCTTCGCCGCCGTGCTC
CCGCCGCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCAACCACTCCTCCTCCTCCTGGTTCAGCTACCTTCA
CTCTGCAGTCTGCACATTAGTCTTGCGTCAATAGTGGTACTGCAGCCATGGTGAATTGGTGGTGTGCTGACCTTTCTGCC
TGCGTGTG------TGTGCAGTCGGAGTTCTTCATCTCGCTGCCGCTGACGATGCTCGGCTACATCCCCGGCATCATCTA
CTCCGTCTACGTCATCCTGAAGACGCCGCCGGAGCTGCCGAGCATCGACGGCGAGCGGCCCTACTACATCCTCGCCTGA-
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>chr7B_1_TraesCS7B01G411100
CGCCGCGGGAAATGAGGCGATGAGGACGACGAAGCGGCGAGCCATAAAAGATTCGTCCGGCGCCCCCGAGTGACCCCCAG
CGCGTCGGGTTCGGGTTGGGTCCGCCGACGCCAATTTCGGTCCGAACTAGCGAAAAATGGACCTCTGGGGACACGACTGG
GCCGATTTTTTAACGCCAACGGTCGAAAAATCGTCTGGGGGGCCTTGTTGGGGGCGCGGCTGGAGATGCTCTAAATTAAG
AGTATTTCCATGGGGGTAAATGCGAGTCACATCAGATTAGCGAGACAAAAGTTGTACCAACTGTCAGGTAATAACCTATT
GAGTATGCAAGAAAAGAACCTATTCGCTTTGAACGAAGGGCATGCATGGTAGCTCTCGACCGTAACATGACATAGCTTGT
TACTCCAAATTGTTCACCATTTCTTAACATCTTGCACGCGACAACAGCCGACAATTTCGTGCAAGTGTGTAATCAACGGG
-TGAAGAAACCGTCACAGTGCTTGTTACTTGGAAGCTTGTACAAAAGTTGCTGTTCAAATAATTAAGTAGTTTTTTTTTG
TGTGAATCGTCTAATTTTTAGCGTAATCGTCTAAACAGTAAATAAT----------------------------------
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-----------------------------TAGTCTGTTGGAGATGCTC--------------------------------
------------------GACGTTTGTTTAGCGGAGCGGATAAAATGATGCGGCAGGCGGATCGGCCGCATCTCCACCAG
AAAAAACAGCACG--------GAC--GAGGAATATTCTCAGCCAGAAATTCGCACACAGCTATTGCTGCGGTCGTCGCCA
CGGCACCTCCACGGTGT--TCAGCGACAGCAAAAGGCCCCTCCACGGCGGGTATCCGGCATCTTCTCCCCGCAGCCATCG
TCCGATTCCGCATCATTCCTC----TCCACCCGGCTTGCTTTGCTTGCCTTGCCGGCTGCTGCCTCCTCGGATTTAAAGC
TACGCCACCTC-----TCCAGCAAGGCCCCGACCACGACATACTCCCCGGTGCGCCAAGTTAGTCAGTTAGCCGAGGCGC
GACGGC--------GGTGGCAGGATGAGCTACTCCGGCGGCTGCTCGACGTGCCTGGAGATCGTCTTCGCCGCCGTGCTC
CCGCCGCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCAACCACTCCTCCTCCTCCTGGTTCAGCTACCTTCA
CTCTGCAGTCTGCACATTAGTCTTGCGTCAATAGTGGTACTGCAGCCATGGTGAATTGGTGGTGTGCTGACCTTTCTGCC
TGCGTGTG------TGTGCAGTCGGAGTTCTTCATCTCGCTGCCGCTGACGATGCTCGGCTACATCCCCGGCATCATCTA
CTCCGTCTACGTCATCCTGAAGACGCCGCCGGAGCTGCCGAGCATCGACGGCGAGCGGCCCTACTACATCCTCGCCTGAT
GTGACAAGCTCCTTCGTGCACATACTGCTGTAGTGGAGCTTGCTGTACTGTATGTGTCGGCCATTGTTGGGATTGGA---
---CATGACTTGTAAGTTGTGCGTAGCCGTAGCTAGTAGTTTGAGGACAATTCTTTAGTAGCGGTGGTTGTACATGTAGT
TTTCTTTCTTGATTGGTTGGGTATATTGGTGTCGTGATGTATGATTGGGTTCATCCGTTGGTTCCTTGAGTAAAAGAATC
TTGGTACCGCTGGCTCGGGAGCTAGCCATTAGTGTACTGTT-------CATGATGCAAATCAACTGTTACTCCCTTTGTT
TCAAAATAAGTATCTCAACTTCTTTATTGCAGCTTTGTATTAAAATTAGTATAAAGTTGAGACATTTATTTCAGGAGGAA
GGGAGTACTTGTTTGCAATGGATGGGTGTAA-------------------------------------------------
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------------------ATCATCGTGGTCAGTGTCAGATGCATCGACACAATGATCTGAGATGTTTAAACTGAGAACAA
ATAAAATAATACGGTGGCTGAATTTTATTCCGGTCTCAATTTGAATCAACGAATTCTTGTAAGAGTTCAGGATTCTGACC
ACTGTTGAAGGTGACTCTGACAAATAGTGTAATACAATGCTTGGAGGGTGCTTGGATCCAAGAGACTTATTTTAGTCTGA
CTAAAAATAGTCTTTTTAAGAGGCTAAAGTTCCAAGCACCTCTGACTAAAGAGGGGCTAAAACTAGTCTTGAGACTAATT
TTTTTTAGTCAGGGGTACCCCTACTAAAATGTGGATTAGTCCTCTCTCTCTTCATTTAACTCCTCTCCTTTAACACAGGA
GAGTTCTGGATTGGAGGGTTTGAAGGATAATAAATGCTCATTAACTTGATTTTAGTCTCTTTAGTATTTGGATCCAAGCA
TGGGTGAGGCTAGCAAGTTTTAGTTCCACTACTTTTAGTCATGGGACTAAAACGTATCCAAACACCCTCTTAGTTATAGC
GACTAAGGATTATTAGTAAATGACTTAAGGCCTAACTTG
>chr7D_227
TGCTTAAG------------------------------------------------------------------------
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---------------------------------------------------------------------------TTAAG
AGTATCTCCATGGCAGTAAATGTGAGTCACGTCAGATTATTGAGACAAAACTTGTACCAACTGTCAGGTAATAACCTATT
GAGTATGCAAGAAAAGTACCTATTCGCTTTGAACGAAGGGCATGCATGGTAGCTCTCGATCTTAACATGACATAGCTTGT
TACTCCAAATTGTTCACCATTTCTTATCATCTTGCACGCAACAACAACCGATAATTTCGTGCAAGTGTGTAATCAACGGG
GTGGAGAAACCGTCATAATGCTTGTTGCTTTGAAGCTTGAACAAAAACTGCTGTCCAAATAATTAA-----TTTTCTGTT
TGAGAATCGTTTTATTTTCAGCTTAATTGTCCAAATAACTAGTTTTTTTAACATAGTACAATCATATATGCTCACATATA
CACATAAATTCATTCATATGAAGTAGGAAAATGCGTACACCAGAATCAAGTTAATTAGGACTTGAATCTTGGTGGGTTGG
TTCCAGCCTAAGAAACCTAATCATCAGAGCTATGCTCGGTTCATCACAAATATAAAGATGTTGGAATAACTTTTTCTTAA
TCGAAAGTATATAGACATGTTTTATTAGGCCTCTGAGAGTGCGCCTGATCAGTGTGTATCCCAGACCCAGAAATGCGGCT
TGGTTGGGGCCTTCGACTTTATATGTTAGCCTTTGGTGCGAGGTCTATTTGGTATTCGGCTCGGACTATTGGCACGCCTT
CAGCAAGTGGATAGGAGCAGCGATTGTTGTTGCCAAGTTGGTGGGTTTAGACTTACTGTTGTATTACTTTGTAACGTCTT
TGTGAGTAATTAATAAAATCGTACAGATACAGAGGCCGGGGTCATCCTCTTTTTCAAAAAAATAAACATGGTTTAGTGTG
TTTGTTCACTCATTTTAGTCCATGTGTAGTTCAATAGAAAAATACCCAAACCATTTTTATATTTTTTTTGACGGGACCCA
AACCATTTTTATATTTGTAAAGGAGAGAGTAGTTTGTTGAAGATGCTCTAACTAACGAAAAAACTAATCAGAGGTTTCCC
GCCAAAAAAAACTAATCAGACGTTTGTTTAGCGGAGCGGATAAAATGATGCAGCAGGCGGATCGGCCGCATCTCCACCAG
AAAAAAGAAAAAACAGCAACAGAC--GAGGAATATTCTCAGCCAGAAATTCGCACACAGTTATTGCTGCGGTCGTCGCCA
CGGCACCTCCACGGTGT--TGAGCGACAGCAAAAGGCCCCTCCACGGTGGGTATCCGGCATCTTCTCCCCGCAGCCATCG
TCCGATTCCGCATCATTCCTC----TCCACCCGGCTTGCTTGGCTTGCCTTTCCGGCTGCTGCCTCCTTGGATTTAAAGC
TACGACACATCCCTCTTCCAGCAAGGCCCCGACTACGACATACTCCCCGGCGCGCCGAGTTTGTCAGTTAGCCGAGGCGC
GACGGC--------GGGGGCAGGATGAGCTACTCCGGCGGCTGCTCGACGTGCCTGGAGATCGTCTTCGCCGCCGTGCTC
CCGCCGCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCAACCACTCCTCCTCCTCCTGATTCAGCTACCCCCA
CTGTGCAGTCTGCACATTAGTCTTCCGCCGGTGGTCA-------------------TGGTGATGTGCTGAAATTTCTGCC
TGCGTCTGCGTGTATGTGCAGTCGGAGTTCTTCATCTCGCTGCCGCTGACGATACTCGGCTACGTCCCCGGCATCATCTA
CTCCGTCTATGTCATCCTGAAGACGCCGCCGGAGCTGCCGAGCATCGACGGCGACCGGCCATACTACATCCTCGCCTAAT
GTGACAAACTCCTTCGTGCACATACTGCTGTAGTGGAGCTTGCTGTACTGTA----TCGGCCATTGTCGGGATTGGA---
---CATGACTTGTAAGTTGTGCGTAGCCGTAGCTAGTGGTTTGAGGGCAATTCTTTAGTGCCGGTGGTTGTACATGTAGT
TCTTTTTCTTGATTGGTTGGCTATATTGGTGTCGTGATGTATGATTGGGTTCATCTGTTGGCTCCTTGAGGAAGAGAATC
T---TCCCGCTGGCTCGGGAGCTAGCGATTAGTGTACTGT----------------------------------------
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>chr7A_652
TGATCC--------------------------------------------------------------------------
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----------------------------------------------------GCAGGCGGATCGGCCGCATCTCCACCAG
AAAAACAGCTACTCCTACAGACGAGGGAGGAATATTCTCAGCCAGAAATTCGCACACAGCCATTGCCGCGGTCGTCGCCA
CGGTGGGCTACCCAGCCGGTCAGCGACAGCACAAGGCCCCTCCACGGTGGGTATCCGGCATCTTCTCCCCGCAGCCATCG
TCCGATTCCGCATCATTCCTCTCCATCCACCCGGCTTGCT--------------GGCTGCTGCCTCCTCGGATTTAAAGC
TACGCCACCTCCCCCTTCCAGCAAGGCCCGGACTACGACATACTCCCCGGCGTGCCGAGTTTGTCAGTTAGCCGAGGCCC
GAGGCGCGACGGCAGGGGGCAGGATGAG---CTCCGGCGGCTGCTCGACGTGCCTGGAGATCATCTTCGCCGCCGTGCTC
CCGCCGCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCAACCACTCCTCCTCCTCCAGATTCAGCTACCTCGA
-TCTGCAGTCTGCACATTAGTC-------------------------ATGGTGAATTGGTGATGTGCTGAAATTTCTGCC
TGCGTGTG------TGTGCAGTCGGAGTTCTTCATCTCGCTGCCGCTGACGATACTCGGCTACGTCCCCGGCATCATCTA
CTCCGTCTACGTCATCCTGAAGACGCCGCCGGAGCTGCCGAGCATCGACGGCGAGCGGCCCTACTACATCCTCGCCTGAT
GCGACAAGCTCCTTCGTGCACATACCGCTGTAGTGGAGCTTGCTGTACC----------GCCATTGTTGGGATTGGATTT
GGACATGACTTGTAAGTTGTGCGTAGCCGTAGCTAGTTGTTTGAGCA-AATTCTTTAGTGCCGGTGGTTGTACATGTAGT
TTTCGTTCTTGATTGGTTGGGTATATTGGTGTCGTGATGTATGATT-GGTTCATCGATTGGGTCCTTGAGGAAAAGAATC
TTGGTCCCGCTGGCTCGGGAGCTAGCGATTAGTGTACTGTAAACTGTCCATGCCGGAAATCAACTGCTGGTA--------
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--------TTGTTTGCAATGGATGGGTGTAAGGGCATCTCCAGCCGCGCCCCCAGAAAGGCCTCCCCAGGCGTTTTTTTT
GCGCCGGCGCCGAAAAATCGGCCCAGTCGCGCCTCCAGGAGCTCGATTTTCGCCGGCTTGGGCCGAAAACAGCGCCGGCG
GACCCAGGCCGAACCCGGCGCGCTGGGGGGCGCCCGGGGGCGCCGGGGCAAACTGTTTTGGCGCGAAACAGCCGCGGGCC
CGCCGCGTCAGCGACTCTACCCTCTTCTCGGCCTTTCGTCGTCCTCATCGCCTCGTTTCCCGCGGCGAATCAATGCCAAA
GCTGCCGCGCCGGTCAGCCTGCGCCATTGATGCCTCACGGGCGGCGCAGTGAAGACCGGATGACGCGCGTCCCTCGCCCT
CCCTCGCCCGCCACGCGTACTCACGGCGGCTCGCGCACGGGCGGCGCCGGCCTATATAAGACGCTCCCCAGAGCACTCGG
CGACTCGTACTCTCTCGCCGTCGTCGTTCCTCCCTCGCCTCTCTCTCGCCATCGCCGTTCCTCCTTCTCCTCTCTCTCTC
GCCGTCTCCAGCACCCATGACCGAGCGCTTCCCAGGCGACGGCGCGGCGGCGAACGGATTCGGCCGCCGCCATCTTCACG
AGAGCGAGGCTCGCCTCCTTTTCGAGGCCGAGTACCCGGTCCCGCCGGACATGCGGGTACCCGGGGCGTGGAGGATCAGC
GTCGGCGGCGTGCCGATGCCCCCAATACCCACCGGCGCGGCGCGGCGTGCGGAGATCGCACGCATCCGCTCGTCCCTGCC
GCGTGCGGCGAGGGAGGGGCCACGGTACGTCCCCGACAGCCCGCTCTGGGAGCCCTACTTCCGCCGCCGACACGCCGAGC
AGCTCGAGGCCACCAACGGCGTCGAACCCTTCGGCAGGCTCAACGCCGTCGGCCGGCGTCGGTGGTAGGGCGTGCCCGAG
CGCACGTTGGAGGCCGTCCTCGAGTACATCGAGGGCGGCAACACGCCGCGCCTCGAGTACCCCGCCCCCCCCTTCCTTCT
CACGCCGCCGGGGAAGCTCCTGGACCCCGAGGCGCATGGAGACCGGGGGGTCCTCCTCGTCCGGCGGCTCGCCCTGCCTC
CGCCCCGTCAAGCCGGAGCCCCAGGGCACGCCGGTCAGCGCGCGCACCCGCAACTTCGGCGTCCGCATCGGCGCCAACGC
CTCCCCACCCACCGGCCGCTTCGTCCTCGTCGAGCCCAAGCCGGAGCCCGGCCTCCCCGCGGAGTACGAGGAGATAGCCC
GGCGCGGCTTCTCCGACGAGGACGCCCTGCGGTGGGCGCGGGACGACTACCTCCGCGACGAGATGGTCCGGCAGCGCCGG
GCCCTGAAGGAGATCGCCGCCCGCAAGCGTGGGCGCGAGGACAAGCACGGCGTCGTGGTCCTCGACAGCGACAACGACGA
CGCCCCCGGACCGTCCAACCTGCCGCGCCAACCGGGGGAGGAATGCAGCAGGGACGGCGGAGGCGTAGGCGGGGGCGGCG
GCGACGACGACGACGACGGCGGTGACTACACGCGGTTCTACAGCCTCCTCAGCATGTAGAACCGCGTGGGCGGGCGGCGA
GGCGGGTGGCGAGGGAGACGGCGGGGGTAGCCCGCGGTAGTTTTCTTCCTTTTTTTGTAAAATATGTTTAAGTTTGAACG
AACTCGCCGATGTTTGCGTTAAATTTGAGTCGTTTTTGCGCCGTATTTGACTTTTTTGACTAACCGTGGGCGCCGCGACT
GGGGGGGCATCACGCCCCCAGTGCGCGGTTTAGCGCCCGTGCGCCTCAGGGGGCGATTTTTTGTCCTTCCTGGGGGCCAA
TGGCTGAAGATGCCCTAAATCATCGTGGTCAGTGTCAGATGCATCGACACAATGATCTGTGATGTTTAAACTGGGAACAA
ATAAAATAACACGGTGACTGAGTTTCATTCCGGTCTCTATTTGAATCAA-------------------------------
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>SNPs
S--SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-----S-------SS-------S-------S--------SS---------S-----------------------------
----------------S------------------------------------------S-S------------------
--------------------------S------------S------S----S----------------------------
---S-----------S-S--------S---S--------S------SS------S-----------SSSSS----S-S-S
--S-------S-S-----S---S----S---S---S-SSS-S-SS-----------------------------------
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---------------------------------S-----S----------------------------------------
---------------------------------------------------S----------------------------
------S-SS--S-------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------------------S---------S----------------------------
---------------------------------S----------------S-----S----S------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------S-----------S--
------------------------S--S-SS-S--SSSSSSSSSSSS--------------S--------SS--------
-----------------------------------------------------S---------S----------------
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----------------------------------------------------SSSS------------------------
-------------------------------------S---------------------SS-------------------
-------------------------------------------------------S-----S--------S---------
-----S--------------------S-------------S-----------SS-S----------S-SS-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
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-----------------------------------------------------------S-------------S------
---------S------S----S---S-----------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_271
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-----------GGGGGTAAATGCGAGTCACA-------------------------------------------------
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>reverse_1882
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-----------------------------------------GCAGCCATGGTGAATTGGTG-------------------
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>forward_447
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---------------------------CATCTTGCACGCGACAACAG---------------------------------
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>reverse_2136
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-------------------------------------------------------GTCGGCCATTGTTGGGATTG-----
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