>input_sequence_82387
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-----------------ATGGCTGCCACCATGAAGCTCACAATCACCTTCCTCCTCCTCGTCTCCGGTACGTCCCCAGT-
-CGTGTGCTTAACTCCTTATGCTTCAGACCATGTACGCACACCTGTGTGACACGCTTTCTCTGACGCTCTATGCTTTGCT
TTGCTTGTTCTTTGTCGTGGATCGAGCAGCGCTCGTGGTGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGT---GT
GCGTCCAGGGAGGGCACATCACCTGCGACAACTACCCCGGCCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAG
GACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCACGCCGGAGTACTGA--------
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>chr4D_1_TraesCS4D01G063400
AAGGCGGATCGTCGGTTTGGGCTGAAGCTGAAGAACTTCATCATCTTCGCCCAGTTCATCGCTATTGCTGTGTTGTGGCG
TTGGTGTGCTAGGTGTGATCATTGTGAGTAAGCTCACCAACTAGGATACAAAGGTAAGCATGCAACCAAACACAGTGTTC
ATGTGCCACTTGGGCCAATGCAGGCAACCGAACAAAGTGCACTTGCGTATTACCTAATGCAGGGAGACTAGATGCAGGCA
ACGAAATAACTTGCAGATGGCTTATTAGGGCATGTTTTTGCTCAACCAAGTTGGGTTAAAAAGTGTATGCAATGCAGGAA
CTGTTCACAACCAACTTGAACCAAACATACCCCAAGGAGCTAATCTGCTATGCCTTATGGTCGACGGACCAAACAACACT
AGAAATGAAGAAAGTGACCAATGTTGAATGCCAGAAAACTTTTCCAAGCTC--AAAGTAAGAAGGTCAACAAAATCCAGG
CCACGAAAACTGTTGCCAACTTCAGAGCTCATCTCCAACGCTGTGTGAA-CCCACGACGCGACTTTTGAGCGGTCAACCC
GATCCGCATCGACGAAGCAGTGGCAACTTGCAAAAGATTGG-----ACGCCGATCCATCCAGCACGGCAACCCTCACGGC
CTCACATACTCAGATCCGCGCGCCACGTGATGCTGCTTGAAGTCAGAGGAGGCGCGCCACCAAGTCAGCAACGTCCTCTG
ACTTTTCGCCCTC------------------------GCTGAGATCAACGCGAAGCCTGGCCATTGT--------TCTGA
AATCCACGAAGCAGGCGTCGACGCAAGCACGTACGCACCGGAGTAC----ATCAGTACCGCGCGCCACGTGATGTCGCTT
CTAGTCTCCAGTGAACCCACGTACGCGGCACAGGGTCAGAGATC---------CCGGCATGCAGTTTGGCTGAACCCAAG
CCGGACGTACACCCACATCCCCGG-----------------------------------------------------CCC
TATATAAACGCAACGGCGCCGAGCTC-------CAAACACAGATCGCACCGCGCAAACGCAGCACACGT-----------
-------------AAGCATGGCTGCCACCATGAAGCTCACAATCACCTTCCTCCTCCTCGTCTCCGGTACGTCCCCAGT-
-CGTGTGCTTAACTCCTTATGCTTCAGACCATGTACGCACACCTGTGTGACACGCTTTCTCTGACGCTCTATGCTTTGCT
TTGCTTGTTCTTTGTCGTGGATCGAGCAGCGCTCGTGGTGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGT---GT
GCGTCCAGGGAGGGCACATCACCTGCGACAACTACCCCGGCCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAG
GACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCACGCCGGAGTACTGAGATGAACT
ACATGCGGTTCGGCATGATGCTGGCTCGAGTCCGACCTCAATGAAGCTGCAAGTGTGTGTGTGTCGTGGAGTTAGTAAAT
ACCCCCTCCGTATCAAAATATAAGA--------------------------------CATCTTACGTTT---TAATACAA
AGGGAGTATGATGTAAGTTTGTGTC-GTGGAATAAATAACGAAAGGAATGCAGTCTGTTGATCAAGTTTCATAGCAGGGC
CAGGCACATAAAAAGGAAACCGAAAAAACACCGAAGTAGCTAGGAGTATCTGAAACAACTGACCGAGCGCACATGATCAA
AACAATGCTAGTAAAAAGGTTTTTAACGATGGGATATGTGGTCGTTCAAAGTTGTTATTTTTGTAGCGGCGGGACAGTGT
GTCGATGTTAATTTTGTGAGGAAATAACGACCATAGTTTTGGTATTGGCGGCCACTTTTATCACCTCTAAAATTACTTCC
ATGGTTACTAAAATGTGGAATGCTTACACCCCCTTTAAAGTTGAACGGAGCTCTAGTAATCCCTTCTTTGCAACCATCGC
TTGGTTAACCGCCTTTGTAAAAGTAGCATCTGCACGATGTGATCCCTTGG------------------------------
--------------------ATTGTATATATAGCCTTGTTCATCATCAATAAAAACAACACCTCATTCTCAATCTCATT-
TTACCTCAACATTGCCAATTGTTTGGCAGTGTGATTCCGTGGGAGTCCATGTAGATAATCCAACTTTGCACGGTTCGAAT
AAATTCTCCGAGCAAAATGTGCTGAGACACATAAAAGGTTTTAGGCGCATGATAGATTCAGTTCAGCGAATGTGAAC--A
GAATTGACCAGATGCGTTGCCCTACTCACTTTCCACTCTTCCTTGGTTAACTTTGGACGCGAAAGCAGTAAGGGCGTGTT
TGGTTGCCTGCATAGGCCTCGACCAGGACCGCGCGAGAAGTGATCAGCCTGTTTGGTAGCCCGCATACACTATTGGGCCT
GCATCGCACGCTTCTTAAAGCACCTCTGGGCCTGGCTCACT
>chr4B_420
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-------------------AATGTTGAATGCCAGAAAACTTTTCCAAGCTC--AAGGTAAGAAGGTCAACAAAATCCAGG
CCAGGAAAGTTGTTGCTAACTTCAGAGCTCATCTCCCGCGCTATGTGAACCCCACGACGCGACTTTTGAGCGGTCAAC--
---------------------------TTGCAAAAGATTGG-----ACGCGGATCCATCCAGCACGGCACC--------C
CTCACATACTCAGATCCGCGCGCCACGTGATGCTGCTTCAAGTCAGAGGAGGCGCGCGACCAAGTCAGCAACCTATTCTG
ACTCTTCGCCCTGGATCGAATCGGCCGGACAAAGCGTGCTGAGATCAACGCGAAGCCTGGCCATAGT--------TATGA
AATCCACGACGCCGGCGTCGACGCAAGCACGTACGCACCGGAGTACGTACATCAGTACCTTGCGC---------------
---------------------------------------------------------CATGCAGTTTGGCTGAACCGAAA
GCCCTACGTACAC-------------------------------------------------------CCACAGCTCCCC
TATATAAACGCACCGGCGCCGCGCTGCAAAGTGCAAACACAGATCGCACGGCCCCAAAGCAACACACGAAATTAAGCAAG
CGCACACACACGCCAGCATGGCTGCCACCATGAAGCTGACAATCACCTTCCTCCTCCTCGTCTCCGGTATGTCTCCCCAA
CCGTGTCCTTGACTCCTTATGCTTCAGACCATGTACGCACACCTGTGTGACACGCTTTCTCTGACCGCTTCACTC-----
TTGCTTGTTCATTGTCGTGGATCGAGCAGGGCTGGTGGTGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGT---GT
GCGTCCAGGGAGGGCACATCACCTGCGACAACTACCCCGGGCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAG
GACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCACGCCGGAGTACTGAGATGAATT
ACATGCGTTCGTCATTG---CTGGCTTGAGACCGT--TCAATGAAGCTGCAAGTGTGT------CGTGGAATAAGTAA--
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----AGTATAATGTAAGCTTGTGTCAGTGGAATAAATAACGAAAGGAACGCAGTCTGTGGATCAAGTTTCATAGCAGGGC
CAGGCACATAAAA-GGAAACCGAAAAAACACCGAATTAGCTAGGAGTATCGGAAACAGCCGAGTGAGCGCACATGATCAA
AACAATAGCTCAAAATG------------------------------------GTTATTTTTGTAGCGGCGGGACAGTGT
GTCGATGTGAATTTTGTGAGGAAATAACGACCATAATTTTGGTATTGACGGCCGCTTTTATCACCTCTGAATTTACTTCC
ATGGTTACTAAAATGAGGAATGATTACACCCCCTTAAAAGTTGAACGGAGCTCTAGTAATCCCTGTTTTCGAACCATCGC
TTGGTTAA-CGCCTTTGAAAAAGTAGCATCTACACGATGTGATCCCTTGG------------------------------
--------------------ATTGTATATATAGCCTTGCTCATCGTCAATAAAAACAGTAGCTCATTCTCAATCTCATTT
TTACTTCAACATTGCCAATTGTTTGGCATTGTGATTCCGT--------------------------TGCACGGTTCGAAT
AAATTCTATGAGCATAATGTGCTGAGACACATCAAAGATTTTAGGCGCATGATAGATTCAGTTCAGCGAGCGTGCACAGA
GAATTGACCAGATGTGTTGCCCTACTCACTTTTCACTCTTCCTT-GTTAACTTTGGACGAGAAAGCA-------------
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>chr4A_423
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----------------------GTTGAATGCGAGATAAGTTTTCCAAGCTAAAAAAGTAAGAAGGTCAACAAAATCCAGG
CCACGAAAGTCGTTGCTAACTTGAGAGCTCATCTTGCACAGTGTGTGAA-CCCACGACCCGACTTTTGAGCGGTCAACCC
GAACCGCATCGAAGAAGCAGTGGAAACTTGCAAAAGATAGGATAGTACGCCGATCCATCCAGCACGGCAGT--------C
CTCACATACTCAGATCCGCGCGCCACGTGATGCTGCCTCAAGTCAGAGGAGGCGCGCGACCAAGTCAGCAACCTCCTCTG
ACTTTTCGCCCTCGATCGGCCAT---GGACAAAGCATGCTGAGATCAACCCGAAGCCTGACCATAGTTCTGAACTTCTGA
AATCCACGAAGCTGGCGTCGACGCAAGCACGTACGCACCGGAGTAC----ATCAGTGCCGCGCGCCACGTGATGTTGCTT
CTAGTCTCCAGTGAACCCACGTACGCGGCAGAGAGTCAGAGACC---------CCAGCATGCAGTTCGGCTGAGCCGAAG
CCGGACGTACTCCCCGATCTAGATATATTCATTTATACAACGAGTAATTTGAAACGGAGGGAGTACCTCCATAGCTCCCC
TATATAAACGCACCGGCGCCGAGCTACAAAGTGCAAACACAAATCGCACGGCGCAAACGCAACACAC-------------
-------------AATCATGGCTGCCACATTGAAGCTCACAGTCGCCTTCCTCCTCCTCGTCTCCGGTACGTCCCCAGC-
-CGTGT--------CCATATGCTTCA-ACCATGCACGTACACCTGTGTGATGCGCTCTCTCTGACGCTCTATGC-TTGCT
CTGCTTGTTC-TTGTCGTGGATCGAGCAGCGCTGGTGGCGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGT---GT
GCGTGCAGGGAGGGCACATCACCTGCGACAACTACCCCGGGCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAG
GACGGCAAGGGCTGCGTGCTCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCCCGCCGGAGTACTGAGATGAATT
ACACGCGGTTCGGCATG---CTGGCTCGAGTCCGAGCTCTATGAAGATGCAAGTGTGTGT--GTCGTGGAGCAACTATAG
ATACACTTCCTATCAAAATGTAAGACCATTTTTGACATTATGATAGTGTCAAAAAAGCATCTTACATTTTAGTAATACAA
AGGGAGTATCATGTAAGTTTGTGTC-GTGGAATAAATAACGAAAGGAATGCAGTCTGTCGATCAAGTTTCATATCAGGGC
CAGGCACAGC-AAAGGAAACCGGCAAAACACCAAATT------------------------ACCGAGCGCACATGATCAA
AACAATACTAGTAAAAGGGTTTTTAACGATGGAGTATGTGGTTTTTTTCTTTTCAAAACACAATACAGACGCAAGCGCTT
ATACATACGTGTATACACTCACCCCTATAACGCACACACACACGCACATGCATTGCCGAAAATTCTGAAATAAATCCAGA
AATAATGTAAGCAGCAGGACTTGAACCCTGATGGGCTGGGGATAACA------TTGTCATTCTAACCATCCAACCATAGG
TTAGTTCA-TGAATATGTGGTTGTTCAGAGTTAAAATGTGATTGTTGAAAGTCTTTGGTAAGGTTATGGGCCCCGTTATG
TGATCGTTGAAGTCTTAAAAATGATAGATTTAGTTTAGCTATTCGCAAAAAAAAAG------------------------
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------------------------------------------------------GATTCAGTTTAGCGAGCGTGAACAGA
GAATTGACCAGATCCGTTGCCCTACTCACTTTCCACTCTTCCTTGGTTAACTTTGGACGAGAAAGCAGTAAGCGCTGTGT
T-------------------------------------------------------------------------------
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>chr4A_727
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--------------------------------------CTGAGATCGACGGGAAACGTGGCCATAGT--------TCTGA
AATCCACGAAGCCGCCGTCGACGCAAGCACGTACGTATTGGAGCACATAGTAT-----CGCCTGCCATGTGATCTTGTTT
CAAATCCCCGGTGAACC----TACGTGGCACAAAGTCAGAGAGGGCGGCGGATCCAGCATGCAGTTTGGCTGAGCTGAAC
CGA---------------------------------------------------------------------AGCCTCCC
TATATAAACGCACCGGCACCGCGCTGCAAC-------CACAGATCGCACGACGCACAGAGACGA----------------
-------ACGCGCAAGCATGGCCGCCACCATGAAGCTGTCACTCACCTTCGTCCTCCTCCTCTCCGGTAAGCCTCCATT-
-CGCATCCTTGCTTGTGTTTTCTATGATCAAGCATCACTCCCTCTCACGATTATGTATC---------------C-----
TTGCTTGTG-TTTGTTGTGGATCGAGCAGCGCTGGTGGTGTTCGGGGACGC---GCAGGCGACCTGCGACAACATCCGGT
GCATCCAGGGAGGGTACATCACCTGCAAGAACTACCCCGGCCAGAAGCTCGACGGGTGCGCCTGCGTGTGCGCGCCCGAG
GACGGCAAGGGCTGCGTGCTCCACCTCGACAGCGGCTCCACCAACAAATGCACCA-------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------------------------------------------------------------
--------SS------S-------------------S-------------------------------------------
--S---------S----------S---------------------------------------------S-SSSSSSSS-
--------------------------------------S------------------S--------------S-------
----------------------------------------------------------------S---------------
------------S--------------------------------------------------------------S----
---------------------------------S--------S------------S--------------------S---
----------S---SS---SSSSS--------------------------------------------------------
------------S------------S-----------------------S-----------S------S-----------
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------S---S---------------------------------------------------------------S-----
---------------------------------S----------------------------------------------
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------------------------------------------------------------------------------S-
-----------------SSS---------------S------------------------SS----------S------S
-SS-S--S-S---------S---------------------------------------------S--------------
---------S------------------------------------------------S---------------------
-----------------------------------S--------------S------S-S--------------------
------S---------S---------------SS--------SS--SSSSS-----------------------------
--------S--------------------------S-----------S-----S--------------------------
---------------S------S------------S----------------------------S----S----------
--------S----------------------S------------------------------------------------
--------------------------------------S-----S------------SS-S-------------------
----S-----------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSS--------------
-------SS-----S-----------------S----S-------------------------------SS---------
-----------------------------------------------------------S------------S--SSSS-
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_240
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------------------------------------------------------------AGGGAGACTAGATGCAGGCA
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>reverse_2112
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-------------------------------GCACGATGTGATCCCTTGGA-----------------------------
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