>input_sequence_82385
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-----------------------------------------------------------------ATGGGTGTGGCTGGA
ACACGGGGGGACGTCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGAAGCTGGGAGCGAGGCAGCTCGTAG
GCTGGATGGAGAAGAGGATGAGCGGCACTGGCTGGTGGACAA--GGTCAAGGGAGAAGCAGCGATGGTGATGTGTGGAGA
AGAGGCACAGACTGGTCAAATGGAGCTCTCGGTGGGG------ATTGCTACTGCTATTTTTTAATGAACTGTTGCTAGAT
ATGGCTGTTGCTAGATGTCACTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGCCATGGTTTAATGTTTCTGCT
AGAAGATGATGCTCTATTGCCATTGTTGCCA-------CATATAAAGTAA------------------------------
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>chr2A_1_TraesCS2A01G394200
ATGACACCATGGGGAATTACGATTCAGAGTGATACACATGGCGAAGATGTTGACGCTTCTGCTGCAGATGATGATTACAT
TGCTTTTGTCGTATTTTCCTGTCAGAAGACGTTTTTTATCTACTATGTGAAATTGTGTTTGCTATGACAACTGAAACCTG
ATGAACATGTTGTTTAGTATTTTTGCTGTGAGAACATCACTTGTTATGTATGCTGATTTGTGTTTGGTGATTGTATGACA
ACTAAAACATGATGACATTGTTGTTTAGTTGTACTCATATTTGGCTGTGAAACTTGAATTTGATGACATAGTTTGCTGTT
GGACTGCAATTTGCTCAACGTCTTCGAATGAGAACAAAGCTGACCCGACAGGGCCTCTGCTATTTATTTATTTATCTCTC
CCTAATAATAAAGCACGGATTGAGTCTCCGGGTTCATCGTCGCGCACCTTTTGCAAAAAAGCTCTTGGTATTCCCTGGAA
TTAACCCGCACTCCATGATGTTCTTCTGCAAAAAAACACGATTCGACAATCCCTGTGTCTTCCGCAAGATAACTTGAGAC
GCC-TGGTGTTTGGGTTGCCTCCGCCGCCATGCCCCCATCCCTCCCACACTGCGGTGCACGGGGCAGGGGGAACCGGGC-
---------------------------------------------------------GAGGTTTCCGGCAGGGGCAAGCT
CTTGTAGGTATGCGCCAAATCGA--AGAGAGGGATTGAGAGAAAGAGAGATGCAGGG-----------------------
-----------G-----AGAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCAGGAGAAGTGAGGCGCATGATAGA
GAGAGTACCGAGGGAAGGAGGAAGAGGAGAGATGGT-GGGACGACCGGTGTGGTTGCTCCGGTGACGGAGTCCGGCGGGA
TCGGCGGCGTTTATTGCCCTTGCCGCGGTCGGGGAAGAGGAACGGAGCCATGGGTGTGGCTAGAACACGGGCG---GGC-
GGGGGAGCACGGGGATCGTGCGGCAGCAATCACCCTGGAAACGGTCGGGGTAGAGGAACGGAGCTATGGGTGTGGCTGGA
ACACGGGGGGACGTCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGAAGCTGGGAGCGAGGCAGCTCGTAG
GCTGGATGGAGAAGAGGATGAGCGGCACTGGCTGGTGGACAA--GGTCAAGGGAGAAGCAGCGATGGTGATGTGTGGAGA
AGAGGCACAGACTGGTCAAATGGAGCTCTCGGTGGGG------ATTGCTACTGCTATTTTTTAATGAACTGTTGCTAGAT
ATGGCTGTTGCTAGATGTCACTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGCCATGGTTTAATGTTTCTGCT
AGAAGATGATGCTCTATTGCCATTGTTGCCA-------CATATAAAGTAAATTTCATGGGCATTGGTGTATGCTTAAGTT
TCATTATCATATGAAGTGTGCACATGCTTCAAAAAGTC-A-TTTTTTCTTCCTGTCAGATAAATTATCTGCAACAGTGAT
TGAATCTTTGCAAAAAGTAAATATTTTCTCGGGAAGTATTTATGTTCTATCCGAATATGTGATGTCGCGCGTAGCACTAT
AGTCTTCGATGGAGTTTTTATACTGAAAGACGCTTTGTGAT----TTTTTTGCAGGGATACACTTTGTGAACTCTTCATA
TTTTCATTTACCTGAAGTTTGTAGCCCTCAAGCTAAAAGTAAATACTTATTCCTCTCTGTCTGAAGAAATTTTTATCATC
AATCTTACAGCCTTTTTACTTCTGGCGACGTCCTTTTTCTTGCAGGGATACACTTCGTGAAGTCTTCATATTTTCATTTA
CCCGAAGTGTGTAGCCCTCAAGCTAAAATTAAATACTTATTCCTCTGTCTGAAGAAGTTTTTAATCAGCAATCTTGCAGC
TTTTTACCGAGGTCCCTTTGTGAGTTGTAAACTTTAAAATGTCCTTTGTTTGTTTGAAGATATTAACAGTTTCATCTTCC
GGCTTTCCAAATTGTAACATTTCTTAGTTAGTGAATTACTTAATTAAATAACTTGTGCATTTTGTATACCCAAGGGTGAT
GGTTCCTCGCACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTGTGTAAGTGCATCTAGTGCCAC
CCCTAGTTGGTTTTGGAGTATTGACGACAAACCTAGTTGAGGGACTAATGTGTTTGTGAGAATTGCAGGATAACACATGT
AGAAGTCCCTCATTGATTCGGTTTTACTACCAGAGATGACCCCTAAAAATGTATGAAGACATTGAAGTCAAAGGTGGTAC
ATGAAGATATTCACATTGAAGACTATGACAAAAGAAGACACGTTATGAAGCCTATGGAACTCGAAGACTTAGATCTTTCG
TAGTTATTTTTCTCTT
>chr3A_402
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-CTAGTAATAAAGCACGGATTGAGTCTCCGGGTTCACCGTCGCGCACCTTTTGCAAAAAAGCCCCTGGTATTCCCTGGAA
TTAACCCGCACTCCGTGATGTTCTTCTGCAAAAG-ACACGATTCGACAATCCCTGTGTCTTCCGCAAGATAACTCGAGAC
GCC-TGGTGTTTGGGTTGCCTCCGCCGCCACGCCCCCATCCCTCCCACACCGCGGTA-----------------------
-----------------------------------------------------------------------GGGCAAGCT
CCTGTAGGTATGCGCCAAACCAGAGAGAGAGGGATTGAGAGAAAGAGAGATGCAGGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAG-----AGAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCAGGAGAAGTGAGGCGCATGATAGA
GAGAGGACCGAGGGAAGGAGGAAGAGGAGAGATGG-AGGGACGGCCGGTGTGGTTGCTCCGGTAACGGAGTCCGGCGGGA
TCGGCGGCGTTTATCGCCCTTGCCGCGGTCGGGGAAGAGGAACGGAGCCATGGGTGTGGCTAGAACACGGGCG---GGCG
GGGGGAGCACGGGGATCGTGCGGCAGCAATCGCCCTGGCAATGGTCGGGGTAGAGGAACGGAGCTATGGGTGTGGCTGGA
ACACGGGGGGACATCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGAAGCTGGGAGCGAGGCAGCTCGTAG
GCTGGATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAA--GGTCAAGGGAGAAGGAGCGATGGTGATGTGTGGAGA
AGAGGCACAAAGTGGTCAAATGGAGCTCTCGGTGGGG------ATTGCTACTGCTATTTTTTAATGAACTGTTGCTAGAT
ATGGCTGCTGCTAGATGTCGCTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGCCATGGTTTAATGTTTCTGCT
AGAAGATGATGCTCTATTGCCATTGTTGCCAAGTACAACATATAAAGTAAATTTCATGGGCATTGGTGTACGCTTAAGTT
TCATTATCATATGAAGTGTGCACATGCTTCAAAAAGTCATTTTTTTTCTTCCTGTCAGATAAATTATCTGCAACAGTGAT
TGAATCTTTGCAAAAAGTAAATATTTTCTCGGGAAGTATTTATGTTCTATCTGAATATGTGATGTCGCGCGTAGCACTAT
AGTCTTCGATGGAGTTTTTATACTGAAAGACGCTTTGTGATTATTTTTTGTGCAGGGATACACTTTGTGAACTCTTCATA
TTTTCATTTACCTGAAGTTTGTAGCCCTCAAGCTAAAAGTAAATACTTATTCCTCTCTGTCTGAAGAAATTTTTATCATC
AATCTTACAGCCTTTTTACTTCTGGCGACGTCCTTTTTCTTGCAGGGATACACTTCGTGAAGTCTTCATATTTTCATTTA
CCCGAAGTGTGTAGCCCTCAAGCTAAAAGTAAAAACTTATTCCTCTGTCTGAAGAAGTTTTTAATCAGCAATCTTGCAGC
TTTTTACCGAGGTCCCTTTGTGAGTTGTAAACTTTAAAATGTCCTTTGTTTGTTTGAAGATATTAACAGTTTCATCTTCC
GGCTTTCCAAATTGTAACATTTCTTAGTTAGTGAATTACTTAGTTAAATAACTTGTGCATTTTGTATACCCAAGGGTGAT
GGTTCCTCGCACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTG---------------------
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>chr7D_504
TTCTGAT-------------------------------------------------------------------------
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-------------------------------AAAAGCATGATTTGGCAAGCCCTCTGTCTTCCGCACGATAACACGAGAC
GCCCTGGCGTTAGGGTTGCCTCCGCCGCCACGCCCCCATCCCTCCCACACTGCGGTGCACGGGGCAGGGGGAACCGGGCG
ACGGCGGCGGCGGCGTGATCTACGGCATGTCGACGGTTTCATTCCCTGTGGTGGAAGGAGGTTTCTGGCAGAGGCAAGCT
CCTATAGGTATGCGGCGAACCGGAGAGAGAGGAATTGAGAGAAAGAGAGATGCAGG------------------------
-----------G------GAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCGAGGGAAGTGAGGCGCAGGAGAGA
GAGAGGACCGAGGGAAGGAGGAGAAGGAGAGATGACAGGGACGGCCGGTGTGGTTGCTCCGGTGACGGCGTCCGGCGGGA
TCAGCGGCGTTTATCGCCCTTGCCGCGGTCGAGGA---------------------------------------------
-------------------------------------------GTCAGGGTAGAGGAACGGAGCTGTGGGTGTGGCTGGA
ACATGGGGAGACGTCGTGGCATGGGGATGGAGCACGACCGGCCGTAGGTTGGAAGGAGCTGGGGGCGGGGCAGCTCGTAG
GCTGGATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAAAAAGTC-CGGGAGGAGGAGCGATGGTGATGTGTGGAGA
AGAGGCACACACTGGTCAAAAGGAGCTCTCGGTGGGGATTGCTATTGCTACTGCTACTTTTTAATGAACGGTTGCTAGAT
CTGGCTGCTGCTAGATGTCGCTTTGCATACAATTGCGACACTGCTGTTTGTCTGGACTGCCATGGTTTGATGTTTCTGCT
AGAAGATGATGCTCCATTGCCATTGTTGCCAAGTACATCATATAAAGTAAATTTCATGGGCATTGGTGTACGCTTAAGTT
TCATTATCATATGAAGCGTGAACATGCTTCAAAAAGTCAA-TTTTTTGTTCCTATCAGATAAATTATCTGCAACAGTGAT
TGAATATTTGCAAAAAGTACATATTTTCTCACTAAGTATTTATGTTTTATCCGAATATGCGATGTCGTGCGTAGCACTAT
AGTCTCCGATGGAGTTTTTATACTGAAAGACAC-----------------------------------------------
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----CCTCGTACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTG---------------------
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>chr1A_639
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---------------------------------------------------------GAGGTTTCTGGTGGCGGCAAGCT
CCTGTAGGTATGCGGCGAACCAGAGAGAGAGGAATTGAGAGAAAGAGAGATGCAGG------------------------
-----------G-----AGAGAGAGCGAGACTGGAGGTAAGGAGAGGACGAGGAGCGAGGGAAGTGAGACGCAGGAGAGA
GATAGGACCGAGGGAAGGAGGAGAAGGAGAGATCACAGGGACGGCCGGTGTGGTTGCTCCAGTAACGGCGTCCGGCGGGA
TCGGCGGTGTTTA-------------------GGAAGAGGAACGGAGCCATGGGTGCGGCTGGAACACAGGCGGGCGGG-
GGGGCAT----GGGGGCGTGCTGCAGCAATCGCCCTGGCAACGGTCAGGGTAGAGGAACGGAGCTGTGGGTGTGGATGGA
ACACGGGGGGACGTCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGGAGCTGGGGGCGGGGCAGCTCGTAG
GCTGGATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAAAAGGTCACGAGAGGAGGGGCGATGGTGATGTGTGGAGA
AGAGGCACACACTGGTCAAAAGAAGCTCTCGGTTGGG------ATTGCTACTGCTACTTTTTACTGAACAGTTGCTAGAT
CTGGCTGCTGCTAGATGTCGCTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGTCATGGTTTGATGTTTCTGCT
AGAAGATGATGCTCCATTGCCATTGTTGCCAAGTACATCATATAAAGTAAATTCCATGGGCATTGGTGTACGGTTAAGTT
TCATTATCATATGAAGCGTGAACATGCTTCAAAAAGTCAATTTTTTTGTTCCTATTAGATAAATTATCTACAACAGTGAT
TGAATCTTTGCAAAAAGTACATATTTTCTCAGGAAGTATTTATGTTTTATCCGAATATGTGATGTCGTGCGTAGCACTAT
AGTCTCCGATGGAGTTTTTATACTGAAAGACAC-----------------------------------------------
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----CCTTGTACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTG---------------------
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>chr6B_639
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---------------------------------------------------------GAGGTTTCTGGCGGCGGCAAGCT
CCTGTAGGTATGCGGCGAACCAGAGAGAGAGGAATTGAGAGAAAGAGAGATGCAGG------------------------
-----------GGAGAGAGAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCGAGGGAAGTGAGGCGCAGGATAGA
GAGAGGACCGAGGGAAGGAGGAGAAGGAGAGATGACAGGGACGGCCGGTGTGGTTGCTCCGGTGACGGCGTCCGGCGAGA
TCGGCGGCGTTTATCGCCCTTGCCGCGGTCGAGGAAGAGGAACGGAGCCATGGGTGCGGCTGGAACACGGGCG---GGG-
GGGGCAC----GGGGGCGTGCTGCAGCAATCGCCCTGGCAACGGTCAGGGTAGAGGAACGGAGCTGTGGATGTGGCTGGA
ACACAAGGGGACGTCGTGGCATGGGGATGGAGCACGACCGGCCGTAGGTTGGAAGGAGTTGGGGGCGGGGCAGCTCGTAG
GCTGGATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAAAAGATCACGGGAGGAGGAGCGATGGTGATGTGTGGAGA
AGAGGCACACACTGGTCAAAAGGAGCTCTCGGTGAGG------ATTGCTACTGCTACTTTTTAATGAACGGTTGTTAGAT
CTGGCTGCTGCTAGATGTCGCTTTGCATACAAT-----------------------------------------------
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>SNPs
S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---S-------------------------------S-------------------------S-S---------------
--------------S-----------------------------------------------------------S-----
------------------------------S-------------------------------------------------
-----------------------------------------------------------------S--------------
-S-----------------S--S---------------------------------S-----------------------
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-----S-----------------------------S-------S------------------------------------
--------------S-----------------------------------------------------------------
-------------------------------S------S-----------------------------------------
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--------------------------S------------S------------------S---------------------
---------S----------------------------------------------------------------------
-------S-----------S------------------------------------------------------------
----------------------------------------------------------------------S---------
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-------------------------------------------------S------------------------------
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----------------------------S----S----------------------------------------------
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------------------------------------------S-------------------------------------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_72
----------------------------------------------------ACGCTTCTGCTGCAGATGAT--------
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>reverse_1259
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----------------------------------------------------------CAGCGATGGTGATGTGTGGA--
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>forward_73
-----------------------------------------------------CGCTTCTGCTGCAGATGATG-------
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>reverse_1290
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---------GACTGGTCAAATGGAGCTCTC--------------------------------------------------
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>forward_924
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------------------------GAGGAGAGATGGTGGGACGA------------------------------------
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>reverse_2232
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-----------------------------------------------------------------------TAGTGCCAC
CCCTAGTTGGT---------------------------------------------------------------------
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