>input_sequence_82375
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--------ATGGCGTTCCGCGGCGCAGCCTCCCGCTCCTTCCTCGCCGCCGTCCGCGGTCGCACCGCCTCCACTGCCCCG
CGCGTACGCGCGGCCCCCATTCCCGCGGCCCCTCCCCGTCGCATCCCTGCCTCAGCGCCCTCCTCCCCTCTCGCCGCCGC
AAGGTAGTCGGGACGAAATGCCTCCCCGATACGCCAGAAATCAGTGATGTGATGTGACTGTAACAAGTGGTCTTAATCCT
ATGCAGGCCATTGGCGGCGTTGATGGGGTCGCCGGTGTTGGTTGCCGCAAGGCTGACGGGGCACTGCGCGGCGAGCGCGC
GGGCGTGCTGTGAGCTCTCCCAGGGTACCCCCTTCTGCCGCACTTGTCAGGATCGCTAA---------------------
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>chr4B_1_TraesCS4B01G072600
CTTCCGTGCCCGTTAGCAAACCCAGCGTCTGCTGCGTCGCTTGCATGGGCTTGGCCCAGCAACGCACGCTGGCTCC----
CACTCGCTCGCTAGCCGCCCGCTCGATCGTTTGT--------------------------------T-------------
-----------T--CTT-CTTTCC--CTTCCCCAAAATTGCTACAGTATGTCATGATTTCTCTTAGTATAAAAATCAACC
GGTTTTCCCTAAAAAA--------------------------A-CAACTGGTTTTCTATAGTACATACTCTTCTTCTTAG
GAAAA-GTTCATCGAATTCG-AAAAAAAGTTCATCGAAATTTAGAAAGATTTCGTTGAATATCTAAA-T-----------
-----------AGTTCATCAAATTTGCAAAAAAGTTCATCAATTTTAAAAAAA----TC-GTCAAATACGAAAAAAAGTT
CGTCAAATTTGAAAAATGTTCATTGAATTT--G---------------------AAAAAT--------GAATATGA-AAA
A--AAGTTCATC------------------------------------------GAATTTGAAATTTT------------
----------------------------------------------------TTTATCGGATCC-A-AAAAA-GATTCAT
CGAGG-TTGAAAAAAT-G-------------------TTCGCCAGATTTGAAAAAA-GTTCATCGATTATGGAAAAAGTT
CA-T-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCTGGAA--AAAA-AGGAAGAAAT-AAATT
TT-CTCGAATTTG--------------------------AAAAAAAGGGAAAAAGGAAAGATGAAAGAAAAAATCAGAGA
A-AA-GATGTAAGTTATCACATCAAGCTTGGTGGCGCGGCGGTTGTTGCGTAGTCTCACGTGGTCGA--------GGTTC
GATTCTCCCTT--GAGTGCTCTTTTTTGCGTTATAAAAACGTATAGATAACGTTGAGATGGACCGGCCAGTTAGGAG---
-----------GGGGGGTGTGCGCCCGTTTGTGGAAACAGCTC-TATCGGGCGCAAAGGGCGCCAAATAGGATTTGGGCC
ATTTGGCGCT-CCCCTGACGCGAGGTTTCCCTACGTAATTGT-----AGGGGTAGATGGGCCAGAAGCCCAGAACTGCAC
CATTTTGGTAAAACCCTAAACCTCGCCATTTCTAGTTCCCCACCACGCCACCACCGCCGTCCCCACCTTCTCCGACGAAA
CCCTAGCGATGGCGTTCCGCGGCGCAGCCTCCCGCTCCTTCCTCGCCGCCGTCCGCGGTCGCACCGCCTCCACTGCCCCG
CGCGTACGCGCGGCCCCCATTCCCGCGGCCCCTCCCCGTCGCATCCCTGCCTCAGCGCCCTCCTCCCCTCTCGCCGCCGC
AAGGTAGTCGGGACGAAATGCCTCCCCGATACGCCAGAAATCAGTGATGTGATGTGACTGTAACAAGTGGTCTTAATCCT
ATGCAGGCCATTGGCGGCGTTGATGGGGTCGCCGGTGTTGGTTGCCGCAAGGCTGACGGGGCACTGCGCGGCGAGCGCGC
GGGCGTGCTGTGAGCTCTCCCAGGGTACCCCCTTCTGCCGCACTTGTCAGGATCGCTAACAAGTTAGTTATCATGAAAAC
ATCGTACCTGCCTGCATCACAAGCTGCCCCTTTAACATTCTAGATGCATAATTATTTTTGGGGAACGTTCTAGATGTG-A
AATAATGCTTATGCAATCATTACTTGCGTGATGATTTG--ATATGTGTGCATTGGGGAGGATTGCTATCATGGCTTGAAA
TTTCTCCTGGTTGGAGGGTTGTGGTCTGCGGACCATTGTTTTCCGTTATTTGCTCTATCACTGCAATGGTGCATTTTGGT
ACTAATAGGTTTTAATATGGAAGTATGTATATGTCCAGTGTATTTTGTATTTGAGTATGTCATGTTTAGTTGAAATTGCT
TGATGACTATAGTCATGATAATAATATAATTCAGCGTTGGAAATATTTGGAAATGATTTTTCCTACTGAATTCAAGGGGT
TAAAATGCATGATGTGTTTGTCCACATAATGTATGAATTGTATCTGATGCAGTGTTGTTTCGACACTCATTAGTCATTAC
TAACCTCTAGGAGCCATCTTGATCAGAAGCATATCCTTACATGTGAAATGCTGTTTGGCTGGATTACGTGGGTTAGCTTA
TTGCACATTAGTCTAGCTTAACCCTTGGTTGGGGGCGATTAGAAGGCTTTGACGAGGTTGACAT-AGTACATAACTACCT
TACATCATAATAAACCTTGGTCATTATTTGCTTTAAAGTGCGAAATGGTATTTGTCTGAATTATGTGCGTTAGCTTATTG
CCCATTAGGCTAGCTTAATCTTTGGTTAGGGTGATTAGAAGACTTTGACGGGGTTGACGTAAGCACATAACCCCACCTCA
TAATCCGTTACAAACCTAAACTAATCTTAGATTCGTTCTTATCCATTTTTTCATCAGACAGACTTCAGTTGGTCGTGTGT
GTGCTGTTTGTTCCCTGAAGTGTGCCAAATTGTTTTCCTTGTTTTTTCGTGGTGCTGTTTGTGCGCAACGATGTTTTTCG
ACTGGACGATGGGTTGGCGCCTA
>chr4B_1
CTTCAGCGCCTCTTAGCGAACCCAGCGCTTGTTGCAGCGCTTGCATGGGCTTGGCCCAGCAACTCGCGCGGGCTCC----
CGCTCGCTCGCTAGCCGCCTACTCGATCGTTTGT--------------------------------T-------------
-----------T--TTT-CTTT--CTCTTCCCCAAAATTGCTACATTATGTCATGATTTCTCTTAGC-------------
----------ATAAAAATCAACCGGTTTTACCTCAAAAAAAAACCTACCGGTTCTCTATAGTACATACTCTTCTTCTTAG
GAAAA-GTTCATCAAATC---AAAAAAAGTTCATCAAAATTTAGAAAGATTCAATTTCA-----AAA-T-----------
-----------AGTTCATCGAATTTGCAAAAAACTTCATCAATTTTGAAAAAAA--AATT--------------------
---CAAATATGAAAAAAATTCATCAAATAT--G---------------------AAAAAA-GTTCATCGAATATGA-AAA
A--AAGTTCATC------------------------------------------AAATTTTA------------------
-----------------------------------------------------------------A-AAAAA-AGTTCAT
CGAAG-TTGAAAAAAAAG-------------------TTCGCCTAATTTGAAAAAA-GTCCATCAATTATGGAAAAAGTT
CA-TTGAATTTGCTAAT---------------AAAAAGTGCATCCATTTTTCTGGCA--AAAAAGTGAAGAAATATTTTT
TC-CTCGAA-TTT--------------------------GAAAAAAAGGAAAAAGGAAAGATGAAAGAAGAAAGCAGAGA
A-AA-GATGTAACTTATCACATCAAGCTTGGCAGCGTGCCGGTTGTTGC-------------------------------
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>chr1B_1
CTTCAGCGCCCGCTAGCGAACCCAGCGCCCGCTGCATCGCTTGCATGGGCTTGGCCCAGCAACGCACGCTGGCTCCGGCT
C----GCTAGCCTTGC---------ATCGCTCGATCGCTCGTTCACGCAGCACGCTCGATCGCTTGT-------------
-----------T--TTT-TTTT--CTCTTCCCCAAAATTGCTACATTATGTCATGATTTCTCTTTGG-------------
----------AAAAAA--------------------------C-CAACCGGTTTTCTACAGTACATACTCTGGTTCTTAG
GAAAAAGTTCATCGAATTCG-A------------------------------------------AAAAA-----------
-----------AGTTCATCGAATTTGCAAAAAAGTTCATCAATTTTGAAAAAAC--ATTTGTCGAATACG-AAAAAAGTT
CATCAAATTTGAAAAAAGTTCATTGAATTTTTT---------------------AAAAAA-GTTCATCGAATATGA-AAA
A--AAGTTCATC------------------------------------------GATTTTGAAGCAAAGTTCATCGGATT
TGAAAAAAAGTTCATCGAATTTGGAAAAA---------------------AGTTCATCGGATTC-A-AAAAA-AGTTCAT
CGAAG-TT--AAAAAAAG-------------------TTCGTCAGATTTGAAAAAA-GTTCATCGATTATGAAAAAAGTT
TATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCCGGAA--AAAA-GTGAAGAAAG-AATTT
TT-CTCGAATTTT--------------------------AAAAAAAGGGAAAAATAAAAGGCCAACGAAGAAAGTGTAGA
A-AA-GATGTATGTTATCACATCAAGCTTGGTGGCGCGGTGGTAGTTGAGTCGTGTCACGTAGCGTTTGGTAGGGGGTTC
GAATCTCCGCTGAGATCTGTCTTTTTTGCGCTATAAAATCCTATAGCGAACGTTGTGATGGGCCGGCCCGTTAGTAGCGA
ACGAAGGGA--GGGGGGTGTGCGCCCGATTGTGGAAATAGCTG-TATCGGGCGCAACGGGCGCCAAATAGGATTTGG---
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>chr6D_1
CTTCAGCGCCCGCTAGCGAACCCAGCGCCCGCTGCGTCGCTTGCATGGGCTTGGCCCAGCAACGCGCGCTGGCTCC----
C----GCTCGCTAGCCGCCCACTCGATCGCTCGATCGC----------------------------TAGTTCATGCAGCA
CGCTCGATCGCT--TTT-TTTT--CTCTTCCCCAGAATTGCTACATTATGTCATGATTTCTCTTAGG-------------
----------AAAAAA--------------------------C-CAACAGGTTTTCTACGGTACATACTCTGGTTCTTAG
GAAAAAGTTCATTGAATTCGAA------------------------------------------AAAAA-----------
-----------AGTTCACCGAATTTGCAAAAAAGTTCATCAATTTTGAAAAAAA--ATTTGTCGAATACGATAAAAAGTT
CATCAAATTTGAAAAAAGTTCATCAAA---TTT---------------------AAAAAAAGTTCATCGA--ATATGAAA
A--AAGTTCATC------------------------------------------GATTTTGAAGAAAAGTTCATCGGATT
TGAAAAAAGGTTCATCG------AAAAAA---------------------AGTTCATCGGATTC-A-AAAAA-AGTTCAT
CAATT-TTGAAAAAAAAATCGTCGAATACGAAAAAATTTCATCAAATTTGAAAAAA-GTTTATCGAATTTAAAAAAAGTT
CA-TCTAATATGA------------------AAAAAAATTCATCGATTTT------------------------------
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>chr5A_1
CTTCAGCGCCCACTAGCGAACCCAGCGCCCGCTGCGTCGCTTGCATGGGCTTGGCCCAGCAACGCGCGCTGGCTCC----
C----GCTCGCTAGCCGCCCACTCGATCGCT------------------------------------GGTTCAGGCAGCA
CGCTCGATCGCT--TTT-TTTTTTCTCTTCTCGAGAATTGCTACATTATGTCATGATTTCTCTTAGG-------------
----------AAAAAA--------------------------C-CAACCGGTTTTCTACAGTACATACTCTGTTTCTTAG
GAAAAAGTTCATCGAATTCG-A------------------------------------------AAACA-----------
-----------AGTTCACCGAATTTGCAAAAAAGTTCATCAATTTTGAAAAAAA--ATC-ATTGAATACGAAAAAAAGTT
CATCAAATTTGAAAAAAGTTCATCAAA---TTT---------------------AAAAAA-GTTCATCGAATATGA-AAA
A--AAGTTCATA------------------------------------------GATTTTGAAGAAAAGTTCATCGGATT
TGAAAAAAGGTTCATCGGATTC---------------------------------------------AAAAA-AGTTCAT
CAATT-TTGAAAAAAAA---------------------TCGTCGAATACGAAAAAA-GTTCATCAAATTTGAAAAAAGTT
CA-TCGAATTTAAAAAAGTTCATCAAATATGAAAAAAGTTCATCGATTTTG-----------------------------
----------------------------------------------------AAGAAAAGTTCATC--------------
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>chr6A_1
CTTCAGCGCCCGCTAGCGAACCCAGCGCCCGCTGCGTCGCTTGCATGGGCTTGGCCCAGCAACGTGCGCTGGCTCC----
C----GCTCGCTAGCCGCACACTCGATCGCTCGATCGC----------------------------T-------------
-----------T--TTT-TTTT--CTCTTCCCCAGAATTGCTACATTATGTCATGATTTCTCTTAGG-------------
----------AAAAAA--------------------------C-CAACAGGTTTTCTACAGTACATACTCTGGTTCTTAG
GAAAAAGTTCATTGAATTCG-A------------------------------------------AAAAA-----------
-----------AGTTCACCGAATTTGCAAAAAAGTTCATCAGTTTTGGAAAAAA--AATTGTCGAATACGAAAAAAAGTT
CATCAAATTTGAAAAAAGTTCATCGAA---TTT---------------------AAAAATGGTTCATCGA--ATATGAAA
A--AAGTTTATCAATTTTGAAGAAAAGTTCTTCAGATTTGAAAAAAGGTTCATTGATTTTGAAGAAAAGTTCATTGGATT
TTAAAAAAGGTTCATCGAATTCAAAAAAA---------------------AGTTCATCGGATTC-A-AAAAA-AGTTCAT
CGAATA------------------------------------------CGAAAAAA-GTTCATCAAATTTGAAAAAAGTT
CA-TCGAATT-------------------TGAAAAAAGTTCATCGAATTT------------------------------
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>chr3B_9
--------CCCGTTAGCGAACCCAGCGCCCGCTGCGTCGCTTGCATGGGCTTGCCCCAGCAACGCGCGCTAGC-------
---------------CGTCCACTCGATCGCTTGT--------------------------------T-------------
-----------T--TTTCTTTT--CTCTTCCCCAAAATTGCTACATTATGTCATGATTTCTGTTAGGA------------
----------AAAAAA--------------------------C-CAACCGGTTTTCTACAGTACATACTCTTGTTCTTAG
GAAAGAGTTCATCGAATGTG-A------------------------------------------AAA-AAAGTTCATTGA
AATTTAGAAAAAGTTCATAGAATTTGCAAAATAGTTCATCAATTTTGAAAAAAATAATC-ATCGAATACG-AAAAAAGTT
CATTGAATTTGAAAAAAGTTCATCAAA---TTT---------------------TAAAAAATTCTATCGA--ATATGAAA
A--AAGTTCATT------------------------------------------TAT---------------------TT
TCAAAAAAAGTTTATCGAATTTGAGAAAA---------------------AGTTCATTATATTCAA-AAAAA-G-TTCAT
CGAAG-TAG-AAAAAAAG-------------------TTCGCCAGATTTGAAAAAA-GTTCATCCATTATGGAAAAAGTT
CAGT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCCGGAA--AAAAAGTGAAGAAAG-AAATT
AT-CTCGAA-TTT--------------------------GAAAAAAGGGAAAAAGGAAAGATGAAAGAAGAAAGGATAAA
A-AA-GATGTAAGTTATCACATCAAGCTTGGTGGCGCGGCGGTTGTTGCGTCGTCTCATGTAGCGAG-------------
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>chr2D_9
--------CCCGCTAGTGAACCCAGCGCCCTCTGCGTCGCTTGCATGGGCTTGGCCCAGCAACGCGCGCTGGCTCCCGCT
C----GCTCGCTAGCCGCCCACTCGATCGCTCGATCGC----------------------------TGGCTCACGCAGCA
CGCTCAATCGCTTGTTT-TTTT--CTCTTTCCCAAAATTGCTACATTATGTCATGATTTCTCTTAGG-------------
----------AAAAAA--------------------------C-CAACAGGTTTTCTACAGTAG-TACTCTTGTTCTTAG
GAAAAAGTTCATCGAATTCG-A------------------------------------------AAA-A-----------
-----------AGTTCATCGAATTTGCAAAAAAGTTCATCAATTTTGAAAAAAT---TC-GTGGAATACGAAAAAAAGTT
CATCAAATTTGAAAAAAGTTCATTGAATTT--A---------------------TAAAAA-GTTCATCGAATATGA-AAA
A--AAGTTCATC------------------------------------------AATTTTGAAGAAAAGTTCATCGTATT
TGAAAAAAAGTTCATCGAATTTGGAAAAA---------------------AGTTCATCGGATTC-A-AAAAA-G-TTCAT
CGAAG-TTG-AAAAAAAG-------------------TTCGCCAGATTTGAAAAAA-GTTCGTCGATTATGAAAAAAGTT
CATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCCGGAA--AAAA-GTGAAGAAAG-AATTT
T--CTCGAA-TTT---------------------------AAAAAAGGGAAAAAGAAAAGACGAAAGAAGAAAGGATAG-
A-AA-GATGTATGTTATCACATCAAGCTTGGTGGCGCGGTGGTTGTTGAGTTGTCTCACCTAGCGATAGGTCAAGGGTTC
GATTCTCCCTCGAGATCGGTCTTTTTTGCGCTATAAAGACATATAGCGAATGTTGTGATGGGCCGG--------------
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>chr6D_186
AAAAAAG-------------------------------------------------------------------------
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------------------------------------------ACCAACCGGTTTTCTACAGTGCATACTCTTGTTCTTAG
GAAAAAGTTCATCGAATTCA-A------------------------------------------AAA-AAA---------
-------------TTCATCGAATTTGCAAAAAAGTTCATCAATTTTGAAAAAAA--ATC-GTCGAATACGAACAAAAGTT
CATCGAATTTGAAAAAAGTTCATCGAATTT--A---------------------AAAAAA-GTTCATCAAATATGA-AAA
ACAAT-TTCATC------------------------------------------GAT---------------------TT
TGAAGAAAAGTTCATCGAATTTGAAAAAA---------------------AGTTCATCGGATTC-AGAAAAA-G-TTCAT
CGAAG-TTG-AATAAAAG-------------------TTCGCCAGATTTGAAAAAA-GTTCATCGATTATGGAAAAAGTT
CATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCCGGAA--AAAA-GTGA-----------T
TT-CTCGAA-TTT--------------------------AAGAAAAGGGAAAAAGAAAAGATGAAAGAAGAAAGGATAG-
A-AACGATGTATGTTATCACATCAAGCTTGGTGGGGCGGTGGTTGTTGAGTCGTCTCACCTAGCGATATGTCGGGGGTTC
GACTATCCCTCGAGAGCGCTCTTTTTTGCGTTATAAAAACGTATAGCCAACATTGTGATGGGCCGGCCCGTTAGTAGCGA
ACGAAGGGA--GGG--GTGCGCGCCCGATTGTGGAAATAGCTG-TATCGGGCGCAAAGGGTGCCACATAGGATTTGGGC-
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>chr5B_186
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----------AAAAAA--------------------------A-CAACCGGTTTTCTACAGTACATACTCTGGTTCTTAG
GAAAAAGTTCATCGAATTCG-A------------------------------------------AAA-AAAGTTCA----
--------------------------------------TCATTTTTGAAAAAAA--ATC-GTCAAATACGAAAAAAAGTT
CATCAAATTT--------------------------------------------TATAAA-GTTCACCGAATATGA-AAA
A--AA-ATCATC------------------------------------------GAT---------------------TT
TGAAAAAAGGTTCATCGGATTTGAGAAAAAATTCATCGAATTTGGGAAAAAGTTCATCAGATTC-AAAAAAAAG-TTCAT
CAAAG-TTG-AAAAAAAG-------------------TTCGCCAGATTTGAAAAAA-GTTCATCGATTATGAAAAAAGCT
CATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCCGGAA--AAGAAGTGAAGAAATAATTTT
T--CTCGAA-TTTT------------------------AAAAAAAGGGGAAAAAGAAAAGGCGAAAGAAGAAAGTGTAGA
A-AA-GATGTATGATATCACATCAAGCTTGGTGGCGCGGTGGTTGTTGAGTCGTCTCAGGTAGCGTTTGGTCGGGGGTTT
GATTCTCCGCCGGGAGCAGTCCTTTTTGTGCTATAAAAACCTATAGCGAACGTTGTGATGGGCCGTCCCGTTAGTAGCGA
ACGAAGGGA--GGG-GGTGTGCGCCCGATTGTGGAAATAGCTGGTATCGAGCGCAACGGGCGCCAAATAGG---------
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>chr2B_186
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----------AAAAAA--------------------------ACCAACTGGTTTTCTACAGTACATACTCCTGTTCTTAG
GAAAAAGTTCATCGAATTCA-A------------------------------------------AAA-AATGTTCATCGA
ATTTGC--------------------AAAAAAAGATCATCAATTTTGAAAAAAA--ATC-GTCGAATACGAAAAAAAGTT
CATCGAATTTGAAGAAAGTTCATCAAATTT--T---------------------AAAAAA-GTTCATCAAATATGA-AAA
A--AT-TTCATC------------------------------------------GAT---------------------TT
TGAAAAAAAGTTCATCGGATTTGAAG-AAAGTTCATTGAATTTGGAAAAAAGTTCATCGAATTC-AAAAAAA-G-TTCAT
CATAGCTGA-AA-AAAAG-------------------TTCGCCAGACTTGAAAAAA-GTTGATCGATTATGAAAAAAGTT
CATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCCAGAA--AAAA-GCGAAGAAAT-TTTTT
TG-CTCGGA-TTT--------------------------AAAAAAAGGGAAAAAGAAAAGACGAAAGAAGAAAGGATAG-
AAAA-GATGTATGTTATCACATCAAGCTTGGTGGCGCGGTGGTTGTTGAGTCGTCTCACGT-------------------
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>chr5A_230
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-AAAA-GTTCATCGGATTC--A------------------------------------------AAA-AAAGTTCA----
--------------------------------------TCAATTTTGAAAAAAA--ATC-GTCGAGTACG-AAAAAAGTT
CATCAATTTTGAAAAAAGTTCATCGAATTT--A---------------------AAAAAA-GTTCATCTAATATGA-AAA
A--AAGTTCATC------------------------------------------GAT---------------------TT
TGAAGAAAAGTTCATCGGATTTGAAAAAA-GTTCATCGAATTTGGAAAAAAGTTCATCGGATTC-AAAAAAA-G-TTCAT
CGAAT-TTA-AA-AAAAG-------------------TTCGCCAGATTTGAAAAAAAGTTCATCGATTATGGAAAAAGTT
CATT-GAATTTGTAAAC---------------AAAAAGTTCGTCCATTTTTCAGTGA--AAAAAGTGAAGAAATATTTTT
TCTCTCGAA-TTTTTTAGT----------------------AAAAAAGGAAAAAGAAAAGGTGAAATAAGAATGTGTAG-
AAAA-GATGTATATTATCACATCAAGCTTAGTGGCGCGGTGGTTGTCGAGTCGTCTCACGTATTGTTAGGTCGGGGGTTC
GATTCTCTGTCGAGAGTGGTCTTTTTTGCGCTATAAAAACCTATAGCGAACCTTGGGATGGGTCGGCCCGTTAGTAGCGA
ATGAAGGGA--GGG-GGTGTGCGCCCGGTTGTGGAAATAGCTG-TATCGGGCGCAACGGGCGCTGAATAGGATTTGG---
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>chr3D_291
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----------------------------------------------------------------AAA-A-----------
-----------AGTTCAACCAATTTGAAAAAAAGTTCATGAAAGTTG-------------------------AAAAAGTT
CATCAGATTTGAAAAAAGTTCACCGAATTT--GAGAAAAAAAGTTCACTGAATGAAAAAA-ATTCACCAAATATGA-AAA
A--AG-TTCATCAA------------------------------------------------------------------
-----------------AATTTGAAAAAA-GTTCATCAAATTTAGAAAAAAATTCAT----------------------T
GGAGT-TGA-AA-AAAGG-------------------TTCGCCAGATTTGAAAAAA-GGTCATCAATTATGGAAAAAGTT
CATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCGTAAAACCAAAAGCGACG----------
---------------AAAGAAAATTTGAAAAAAGAGAAAAAGGAAATGGAAAAAGGTAAGATGAAAGAAGAAAGGATAG-
ATAA-GATTTAAGTTATGACAGCTGGCTAGGTGGCGCGGTGGTTGTTGCAACCTCTCACTTGGCAGGAGATCTCGGGTTC
GATTCCTCTTG--CAGCGCTCATTTTTGCGCTATAAAAACATACAGCGAACGTTGAGATGGGCCGGCCCATTAGTAGCGA
AGGAAGGGAGTGGG-GGTGTGCGCCCGTTTGTGGAAAGAGCTG-TATCGGGCGCAAAGGGCGCCAAATAGGATTTGG---
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>chr5B_302
CAAAATTGAAAAAGCTCAACGAAT--------------------------------------------------------
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-----------------------TTGAAAAAAACTTCATGAAAGTT-----------------------G-AAAAAAGTT
CATCGGATTTGGAAAAAGTTCACCGAATTT--G---------------------AAAAAAAGTTCACTGA--ATGA-AAA
A--AAGTTCATCAAA--------------------------------------------------------------ATT
TGAAAAAAAGTTCATCGGAGTTGAAAAAC---------------------GGTTTGGGAGATTT-GAAAAAA-G-TTCAT
CGAAT-TTG-AA-AAAG----------------------------------------GGTCATTGATTATGGAAAAAGTT
CATT-GAATTTGTAAAC---------------AAAAAGTTCATCCATTTTTCATGAAACAAAAAGTGAAGAAAGAAAATT
T--CTTGATATGAAAAAAGAAAATTTGAGAAAAGAGAAAAAAGAAATGGAAAAAGGTAAGATGAAAGAAGAAAGGATAG-
AAAA-GATGGAAGTTATCACAACTGGCTAGGTGGTGCGGTGGTTGTTGCATCGTCTCACTAAGCGGGAGGTCTCGGGTTG
GATTCTCCTTCCC---CGATCTTTTTTGCGCTATAAAAACATACAGCGAACATTGATATGGGCCGGCCCATTAGTAGCGA
AGGGC----GTGAG-GGTGTGTGCCCGTTTGTGGAAAGACCCG-TATCGGGCGCAAAGGGCGCCAAATAGGATT------
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>chr4D_834
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---------------------------------------------------------------------------GGGCC
ATTTGGCGCCCCCCCTGACGCGAGGCTTCCCTTCGTAAAATTATTGCAGGGGTAGATGGGCCAGAAGCCCAGAACTGCAG
CATTTTTCTAAAACCCTAAACCTCGCCATTTCTAATTCCCCACCACGCCACCACCGCCGTCCCCACCTTCTCCGACGAAA
CCCTAGCGATGGCGTTCCGCGGCGCAGCCTCCCGCTCCTTCCTCGCCGCCGTCCGCGGTCGCACCGCTTCCACTGCCCCG
CGCGTACGCGCGGCCCCCATTCCCGCCGCCCCTCCCCGTCGCATCCCTGCCTCGGCGCCCTCCTCCCCTCTCGCCGCCGC
AAGGTAGTCGGGACGAAATGCCTCCCCGATACGCCAGAAATCGGTGATGTGATGTGACTGTAACAAGTGGTCTTAATCCG
ATGCAGGCCATTGGCGGCGTTGATGGGGTCGCCGGCGCTGGTTGCCGCAAGGCTGACGGGGCACTGCGCGTCGAGCGCGC
GGGCGTGCTGTGAGCTCTCCCAGGGTACCCCCTTCTGCCGCACTTGTCAGGATCGCTAACAAGTTAGTTATCATGAAAAC
ATCGTACCTGCCTGCATCACAAGCTACCCCTTTAACATTCTAGATGCATAATTATTTTTGGGGAATGTTCTAGATGTGAA
AATAATGTTTATGCAATCATTATTTGCGTGATGATTTGTTATGTGTGTGCATT-GGGAGGATTGCTATCATGGCTTGAAA
TTTCTCCTGGTTGGAGGGTTGTGGTCTTCGGACCATTGTTTTC--------GCTCTATCACTGCAATGGTGCATTTTGGT
ACTAATAGGCTTTAATATGGAAGTATGTATATGTACAGTGTGATTTGTATTTGACTAAGTCATGTTGAGTTGAAATTGCT
TGCTGACTATAGTCATGGTAAGAATATAGTTCAGTGTTGGAATTATTTGGAAATGATTTTTCCTACTGAATTCAAGGGGT
TAAAATGCAAGATGCGTTTGTCCACATAATGAATGAATTGTATCTGTTGCAGTGTTGTTTCGACACTCATTAGTCATTAC
TAACCTCTAGGAGCAATCTTGATCAGAAGCATATCCTTACATGTAAAATGCTGTTTGGCTGGATTACGTGGGTTAGCTTA
TTGCACATTAGTCTATCTTAATCCTTGGTTGGGGGCGATTAGAAGGCTTTGACGAGGTTGACATAAGTAAATAACTATCT
TACATCATAATAAACCTTGGTCATTATTTACTTTAAAATGCGAAATTGTATTTTTCTGGATTATGTGCATTAGCTTATTG
CCCATTAGGATAGCTTAATCTTTGGTTAGGGTGATTAGAAGACTTTGACGGGGTTGATGTAAGCACATAACCCCACCTCA
TAATCCGTTACAAACCTGAACTAATCTTAAATTTGTGCTTATCCATTTTTTCATCAGACAGACTTCAGTTGGTCGTGTGT
GTGCTTTTTGTTCCCTGAAGTGTGCCAAATTGTTTTCCTTGTTTTTCCGTGGTGCTGTTTGTGCGCAACGATGTTTTTCG
ACTGGACGATGGGTTGGCACCT-
>chr4A_881
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------------------------------------------------GGGGTAGATGGGCCAGAAGCCCAGAACTGCAC
CATTTTTGTAAAACCCTAAACCTCGCCATTTCTAGTTCCCCACCACGACACCACCGCCGTCCACACCTTCTCCGACGAAA
CCCTAGCGATGGCGTTCCGCGGCGCAGCCTCCCGCTCCTTCCTCGCCGCCGTCCGCGGCCGCACCGCCTCCACTGTCCCG
CGCGTACGCGCGGCCCCCATTCCCGCCGCCCTTCCCCGTCGCATCCCTGCCTCGGCGCCCTCCTCCCCTCTCGCCGCCGC
AAGGTAGTCGGGACGAAATGCCTCCCCGATACGCGAGAAATCGGTGATGTGATGTGACTGTAACAAGTGGTCTTAATCCG
ATGCAGGCCATTGGCGGCGTTGATGGGGTCGCCGGCGTTGGTTGCCGCAAGGCTGACGGGGCACTGCGCGGCGAGCGCGC
GGGCGTGCTGTGAGCTCTCCCAGGGTACCCTCTTCTGCCGCACTTGTCAGGATCGCTAACAAGTTAGTTATCATGAAAAC
ATCGTACCTGCCTGCATCACAAGCTGCCCCTTTAACATTCTAGATGCATAATTATTTTTGGGGAACG------------A
AATAATGTTTTTGCAATCATTACTTGCGTGATGCTTTG--ATATGTGTGCATT-GGGAGGATTGCTACCATGGCTTGAAA
TTTCTCCTGGTCGGAGGGTTGTGGTCTGCGGACCATTGTTTTCCGTTATTTGCTCTATCACTGCAATGGCGCATTTTGGT
ACTAATAGGTTTTAATATGGAAGTATGCATATGTACAGTGTGATTTGTATTTGAGTATGTCATGTTGAGTTGAAATTGCT
TGATGACTATAGTCATGATAATAATATAATTCAGTGTTGGAATTATTTGGAAATGTTTTTTCGTACTGAATTCAAGGGGT
TAAAATGCATGATCCGTTTGTCCACATAATGTATGAATTGTATCTGTTGCGGTGTTGTTTGGACAC-------TCATTAC
TAACCTCTAGGAACCATCTTGATCAGAAGCATATCCTTGCATGTGAAATGTTATTTGGCTGGATTATGTGGGTTAGCTTA
TTGCACATTAGTCTAGCTCAATCCTTGGTT-GGGGCGATTAGAAGGCTTTGGCCAGGTTAACATAAGTACATAACTACCT
TACATCATAATAAACCTTGGTCATTATTTACTTTGAAATGCGAAATGGTATTTGTCTGGATTATGTGCGTTAGCTTTTTG
ACGATTAGGCTAGCTTAATCTTTGGGTAGGGTGGTTAGAAGACTTTGGCGGGGTTGACTTTGGCGG-----------TCA
TAATCCATTGCAAACCTAAATTACCCTTAGATTTGTGCTTATCCAATTTTTCATCGGACAGACTTCAGTTGGTCGCGTGT
GTGCTGTTTGTTCCCTGAAGTGTGCCAAATTGTTTTCCTTGTTTTTTCGTGCTGCTGTTTGTGCGCAACGATGTTTGTGG
ACTGGACGATGGGTTGGCGCCTA
>SNPs
----S----------------------S----------------------------------------------------
-S------------------S-----------------------------------------------------------
--------------S-------SS---------------------S--------------------S-SSSSSSSSSSSS
SSSSSSSSSS----------------------------------------------------------------------
-----------------------------------S---------------SSS--SS-SSSSS----------------
-------------------S--------------------------S---------------------------------
-S--------------S---------------------------------------------------------------
---------------------------------------------------------------SSSSS------------
--------------------------------------------------------------S-----------S-----
---------------S----------------------------------------------------------------
----------------------------------------------------------------SS--------------
------------S--------------------------------------------------------S---S------
---------------------------------------------------S------------S-S-------------
----------------------------------------------SS-------------S------S-----S-----
-------------------------------------S----S-------------------------------------
---------S---------------S------S-----SSS---------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--------------------------S--------------------------
------------------------------------------S------------------------------------S
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S---------------------------------------------S--------------------------
--------------------------------------------------------------------------------
----------------------------------S------SS-----------------------S-------------
----------------------------------S-------S-------------------------------------
--------------S-------------------------------S---------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------------S-------S--------------------S---------------------
--------------------------------------------------------------------------------
---------------------------------S--S-------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_1025
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTGCGTAGTCTCACGTGGTC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_1894
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGGGAGGATTGCTATCATGGC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
