>input_sequence_82359
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-------------------------------------------------------------------CTAGAAAAAGCCA
TTTTGAGTCTCTTCCCAACCATACAGG--------CTACAGCAACACCATGGCGGCATCAGTAGCCTGCGCCTTCTTCTT
CGACGCCGAGCCGGTGGGCGAGCCGGGCATGCCGGCGCTGGACGCGTGCGCGCTCTGCGCCAAGCCGCTGGCACGCGACA
GCGACGTCTTCATGTACAGGGGGGACACGCCCTACTGCAGCAAGGAGTGCCGGCAC---------------------GAG
CAGATGCACCTCGACGCCGTCTCCGCCAGGCAGGC------------CGCCCGGAGGCTGCAGCGGTTCTCGTCGGGAGC
AGAGTCCGGGCGTGCACGCCA---------GGGGGTGTCCGTCTCGAGCTAACCGGCGAGAGTGCCAAGCGACA-----T
ACGTGCCTGACGA-------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G453600
GGCTCGTTGCTTGTGGGCGTGCCAAGCTCATGTGCGTTTGATTGCGCAGACAAGATGTGTATGCGTGCCGACTTCCCAGT
GTCCCGGTTACTGTTCACAAGGTGCTGCCCGGCGCCGTGGCGCGCATGCAGTGCACTTCCCTGTGATTCCCGTACGGAGC
AGCGTCGCCTAGTGAAAAAGAAGTGGCATCAACCTCTTTTCTGGTTTTCTTTTGTGTCTAATTTTCGTTTCTTCTGTGTT
TAATTTTCGTGTAAAGGGCACGAATGATACCATGTGTGGTGCCACCGGGCCACTCCGGCCTGTCCCCGGCCCTGTGTATG
TTTGTTAAAGTGCTGGAACCCTAATTATCAGCACTAAGACGTCCTCTTTACTTTAATCCAAAGCTAGAGCAGATCTGATG
TTACCCACCAAAAAAAGAGAGTAGATCTGATGCCCTCGTTCCCGACAAGTGCCACAGCGGATGCTCGTGTTAATTATTGA
CTTGAGATGGCCCTTTTGCTGGGAAAAGCGGATCAAGTGCTCGTATTTGCAGTCTCAGTCGATCACCCACAGTGCTATCA
GTGTATTTACGAGATCATCTGGTTTTTCTCTACGT------CGACGTCGACGTCGACATGGACATTCTACAGGCTCCTCT
AGTCCTCTCCGTTTGCATAAAGAAGAACTCGGGGCCAACCCCGTCGACGTCACACATAACTCCGTCGTCGCCGTCGTTCT
CGTCGG---GGCCCACGTTAGCCATCGAGCCAACCACCGCATCACACCCAGGCATGCTGGAATAAACAAGTCGAGCGTC-
---TCCCTTCGTCCATGGTTAGG----CCCATACCGCGCACCGGACCATGGTTTCCTGGCCGCCAGTGCACCAATAATAG
GGTTGCCGTGCTC-------CCTTCGCCCATATATATCCACCCTCCCGCTTTGCA--GCTGCACTGATCTCACCCACCTC
TTCCCCCCGCCAAGAGCAGCAGCGAACTGTGAATTCTAGCTCTGTAGC-AGCTCAAGATCGGGCTTGCTAGAAAAAGCCA
TTTTGAGTCTCTTCCCAACCATACAGG--------CTACAGCAACACCATGGCGGCATCAGTAGCCTGCGCCTTCTTCTT
CGACGCCGAGCCGGTGGGCGAGCCGGGCATGCCGGCGCTGGACGCGTGCGCGCTCTGCGCCAAGCCGCTGGCACGCGACA
GCGACGTCTTCATGTACAGGGGGGACACGCCCTACTGCAGCAAGGAGTGCCGGCAC---------------------GAG
CAGATGCACCTCGACGCCGTCTCCGCCAGGCAGGC------------CGCCCGGAGGCTGCAGCGGTTCTCGTCGGGAGC
AGAGTCCGGGCGTGCACGCCA---------GGGGGTGTCCGTCTCGAGCTAACCGGCGAGAGTGCCAAGCGACA-----T
ACGTGCCTGACGAAGAAAGGTTATTATGCTTGAGCCAGCATGATCTCCGTGCACCAAGCCGCTGGTGTCCGTGGTTAGCT
GATCGAGCAGCGCGCGAGGTCGAGGAGACTTGCCATGCTTGAAGAAGCAAGGGGC-GG----GTCGCAGGAGTCGCTCAC
GGCAGGCCGGCGCTGCATGTG-CCGCCTGTCAAGTGATTTGGGCATAAACGCAGCGGAAAAGGGGCTGGATTGGATCTGA
AGAAAGTCAAGCAAACAAGATTCCCCGCGGTTTAACTT--TGAGGCGGTCATGTCTGCCCCTCAGTTTTT----TTCTTT
CTGCGTTATTGTC-------------------------------------------------------------------
-------------------------------------ACTTCTGTACA--AGCTCATT----------------------
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------------------TGCAATAGCACTCTCGCTCGGTAAACTTTCAAGCGAATCGACATACAACATGCCTT-GTGCA
ATCCTCTTTCTGTTCGTGATTTAGGATCCGGTTA----------------------------------------------
-GCTCGATTGAGATTTTAAAAACTAAACCATTTGGATGTTTGCCGCACGATTTGAAACTGCAAATAGTTCAAGATTTGGG
GCGTCGAATCTTGAATCCCGAAACTAATCTGATTGCTAAACACGATGGACAAAAACTAAAGGGAAAAGCTGCCCCTCAAC
CGGCTGAAAACAAAAAGTGAAGCATCCACCACGCGCCATGTGGCGCTGTTGGCCCCGCACACCGCTCTCCCTTCATCTCC
ACCTGATCGATTGTATCCCCTTGTTGGCCTCA-TTTAAGCCATCGTCCACCTTCTCGATCCC-CCCTCGTCCTCCCTTCA
TCAA-GCTACCATGGATTTTCCTCGCCATGAGTATCCTCCAAGAAGATACGACGAGACTTGACAACCAGTGCTGTGAACC
AGTCTCGTCGTGTCTTCTTAGACACGGCGAGTCGGCGGAGAACACTGGGCATGAGATGTTGCAAGCCAGAGCTGACGGCC
CCGCCAACGGGAATACATGTCGGGTGGTGTTGCAAGCCGACTTGCGCTAATGCGACCAGTACTATGAGGGTGGGAGGGGC
AACATGTCGGCCATGTTGCAAA
>chr2B_1
GGCTCGTTGCTTGT------------------------------------------------------------------
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------------------------GGGCGTGCCAAGCCTATACGCGTCCGATCGCGCAGACAAGATGTGT----------
------------------------------------------ACGCGTGCCGGCTGCCCAGTGACCCGGCTACTGTTGAC
AAGGTGCTGCCCGGCGCCGTGGCGCGCATGCAGTG------------CACCTTCC-----CTGTGATTCCCGTACGGAGC
AGCGTCGCCTAGTAAAAAAGAAGTGGCA----------------------------------------------------
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-------------------------------------------------------TCACCCTCTTTTCTGGTTTTCTTTT
GTGTTTAATTTTCGTGTAAAGGGCACGAGTGATACCACCAAGTGCGCACGCATTTGCTATCTTTTGTCACTGCGTGCCTA
GTCATGTGTGGTGCCACCGGGCCACTCCGGCCTGTCCCCTTGTGTATGTTTGTTAAGGTGCTGGAACCCTAATAATCAGC
ACTAAGACGTCCACTTTACTTTAATCCAAAGATAGAGTAGATCTGATGCCCTGGTTCCCGACAAGTGCCACAGCGGATGC
TTGTGTTAATTATTGACGTGAGATTGTCCTTTTGCTGGGAAAATCGGAGCAAGTGCTCGTA-------------------
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---------------------------------------------TTTGCAGTCTCGATCGACCACCCAAAGTGCTATCA
G-------------------------------------------------------------------------------
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>chr2A_555
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--------------------------------------------------------------------------CTATCA
GCGTATTTACGAGACCATCTGGTTTTTTCTCT-----------ACGTCGACGTCGACATGGACATTCTACAGACTCCTCT
AATCCTCTCCGTTTGTATAAAGAAGAACTTGTGCCTAACCCCGTCGACGTCACACATAACTCCGTCGTCGCCGTCGTTCT
CGTCGG---GGCCCACGTTATCCATCGAGCCAACCACCGCTTCACACCCAGGCACGCTGGAACCC------------TC-
---TCCCTTGGTCCATGGTTAGC----CCCATACCGCGCACCGGACCATGGTTTGCAAGCCGCCAGTGCACCAATAACAG
GGTTGCCGTGCTC-------CCTTCGCCCATATATGCCCACGCTCCCGCTTCGCA--GCTGCACTGATCTCACCCACCTC
TTCCCCCCGCCAAGAGCAGCAACGAACTGCGAATTCTAGCTCTGAAGC-AGCTCAAGATCGGGCTTGCTAGAAGAAGCCA
TTCCGAGTCTTTTCCCAACCATACAGGCTACAGGCCTACAGCAATACCATGGCGGCATCAGTAGCCTGCGCCTTCTTCTT
CGAGGCCGAGCCGGTGGGCGAGCCCGGCATGCCGGCGCTAGACGCGTGCGCGCTCTGTGCCAAGCGGCTGGTGCGCGACA
GCGACGTCTTCATGTACAGAGGGGACACGCCCTTCTGCAGCGAGGAGTGCCGCCAC---------------------GAG
CAGATGCAGCTCGACGCCGTCTCCGCCAGGCAGGC------------CGCCCGGAGGCTGCAGCGGTTCTCGGCGGGAGC
AGAGTCCGGGCGTGCACGCCA---------TGGGGTGTCCGTCTCGAGCTAACCAGCGAGAGTGCCAAGCGACATACAGT
ACGTGCCTGACAACGAAAGGTTATTATGCTTGAGCCAACCTGATCTCCGTGCACCAAGCCGCTGGTGTCCGTGGCTAGCT
GATCGATCA--GCGCGAGGTCGAGGAGACTTGCCTTGCTTGAAGAAGCAAGGGGC-GAGCGAGTCACCGGAGTCGCTCAC
GGCAGGCCGGCGCTGCATGTG-CTGCCGGTCAAGTGATTTGGGCATAAACGCAGCGGAAAAGGGGCTGGATTGAATCTGA
AGAAAGTGAAGCAAACAACATTCCCCGCGGCTTAACTT--TGAGGCGGTCATGTCTGACCCTCAGTTTTTTCTTTTCTTT
CTGCGTTATTGTC-------------------------------------------------------------------
-------------------------------------ACTTCTGTATA--AGCTCATT----------------------
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------------------TGAGATGGCACTCTCGCTCGGTACATTCTCAAGCGAATCGACATACAACATGCCTT-GTGCA
ATCCTCTTTCTGTTCGTGA-------------------------------------------------------------
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>chr2B_555
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--------------------------------------------------------------------------CTATCA
GCGTATTTACGAGATCATCTGTTTTTTCTCTACGTCGACGCCGACGTCGACGTCGACATGGACATTCTACAGACTCCTCT
AGTCCTCTCTGTTTGTATAAAGAAGAACTCGGGGCCAACCCCGTCGACGTCACACATAACTTCGTCGCCGCCGTCGTTCT
CGTCGG---GGCCCACGTTAGCCATCGAGCCAACCACCGCTTCACACCCAGGCATGCTGGAATAAACCAGTCGAACCGC-
---TCACATCGTCGATGGTTAGC----CCCATACCGCGCACCGGACCATGGTTTCCTGGCCGCCAGTGCACCAATAATAG
GGTTGCCGTGCTC-------CGTTCGCCCATATATACCCACCCTGCAGCTTGGGA--GCTGCACTGATCTCACCACCCTC
TCCCCCCCGCCAAGAGCAGCAACGAACTGCGAATTCTAGCTCTGAAGC-AGCCCAAGATCGGGCTTGCTAGAAGAAGCCA
GTCCGAGTCTCTTCCCAATCATACCGG--------CTGCAGCAATACCATGGCGGCATCGGTAGCCTGCGCCTTCTTCTT
CGACGCCGAGCCGGTGGGCGAGCCCGGCATGCTGGCGCTGGACGCGTGCGCGCTCTGCGCCAAGCCGCTGGCGCGCGACA
GCGATGTCTTCATGTACAGGGGGGACACGCCCTACTGCAGCAAGGAGTGCCGGCAC---------------------GAA
CAGATGCAGCTCGACGCCGTCTCCGCCAGGCAGGC------------CGCCCGGAGGCTGCAGCGGTTCTCGGCGGGAGC
AGAGTCCGGGCGTGCACACCA---------GGGGGTCTCCGTCTCGAGCTAACCGGCAAGAGTGCCCAGCGACATAC---
--GTACCTGACAAAGAAAGGTTATTATGCTTGGGCTAACCTGATCTCCGTGCACCAAGCCGCTGGTGTCCGTGGCTAGCT
GATCGAGCAGCGCGCGAGGTCGAGGAGACTTGCCATGCTTGAAGAAGCAAAGGGGTGG----GTCGCCGGAGTCGCTCAC
GGCAGGCCGGCGCTGCAAGTG-CCGCCGGTCAAATGATTTGGGAATAAACGTAGCGGAAAAGGGGCGGGATTGGATCTGA
GCAAA-ATAAGCAAACAAGATTCCCCACG---------------------------------------------------
----------GTC-------------------------------------------------------------------
-------------------------------------ACTTCTGTATA--AGCTCATT----------------------
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------------------TGCCACAGCACTCTCACTCGGTAAACTTTCAAGTGAATCGACATGTAACATGCCTT-GTGCG
TTCCTGTTCCTGCTCGTGAAGAAGCGTGCTAATGGGATTTTACAACTGTACACACAGTTAACCAAGATCCGGCTGGGGAT
CGCTCGATTGAGATTTAGCCGTT-----------------TACCGCACGATTTGAAACTGCAAATAGTTCAAGATTTGGG
GCGTCGAATCCTGAATCCCGAAACTAATCCGATTGCTAAACACGGTTGACAAAAACTAAAGGGAAAAGCTGCCCCTTAAC
CGACTGAAAACAAAAAACGAAGCATCCACCACGCGCCATGTAGCGCCGTGGGGCCCACACACCGCTCTCCCTTCATCTCC
ACCTGATCGATTCTATCCCCTTGTTGGCCTCACTTTAAGCCATCGTCTACCTTCTCGATCCCGCCCTCATACTCCCTTCA
TCAAAGCTACCATGGATTTTCCTCGCCATGTGTATCCTCCAAGAAGACATGACGAGACTGGT-AACCATCGCTGTGAA--
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>chr2A_663
TCGGGACC------------------------------------------------------------------------
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-------------------------------------ACGCCGTCGACGTCAAGCATAACTCCGCCGTT---GTCGTTCT
CGTCGCGGTGGCCCACGGTAAGCATCGAACCAACCACCGCAGTACACCCGAGCATGCCGGAATATACAAGTCCAACCACG
GTTTCCCTTCGTCCATGGTTAGATCGACCCATACCGCGCACCGGACCATGGTTTCCCAG--------GCACCAATAATGG
CCTTCCGGTCATCCGGTGCTCCCTCCCCCATATATACCGGCTCTCCAGCTTCGCACCGCTGCACCAAACTCACCCATCTC
TTTCCCCCGCCAAGAGCAGCAACGAGCTGTGTGTTCTTGCTAGCTCTGAAGCTCAAGCGCGAGCTTGCTAGAAGAAGCA-
-------TCTCTCCCCAGTCTGCCA-----------TATAGCAGTACCATGGCGGCATCGGTGGCCTGCGCCTTCTTCTT
CGACGCCGAGCCGGTGGGCGAGCCCGGCATGCCGGCGCTGGACGCGTGCGCGCTCTGCGCCAAGCCGCTGGCGCGTGACA
GCGACGTCTTCATGTACAGAGGGGACACGCCCTTCTGCAGCGAGGAGTGCCGCCAC---------------------GAG
CAGATGCACCTCGACGCCGTCTCCGCCAGGCAGGC------------CGCCCGGAGGGTGCAGCGGTTCTC---------
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>chr2B_1052
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----------------------------------------------CCATGGCCGCACCGGTAGCCTGCGCCTTCTTTTT
CGACGCCAAGACGGTCGGCGAGCCCGGCGTGCACTCCCTGGGCGCGTGCGCGCTCTGCACCAAGCCGCTGGCTCGGGACA
GCGACATCTTCATGTACAAGGGAGACACGCCCTTCTGCAGCGACGAGTGCCGCCAC---------------------GAG
CAGATGCGGCTCGACGCCGCCTGCGCCAGGCAGGCGGCCAGGGCGGCCGCCCGGAGGCAGAAGCACTTCTCGTCGGGAAC
GGGGTCCGGACGCGCGCACCGGGAGTCCTGGGAGGTGTCCGTCGCCAGCTAGCCAGCGAGAGCGGCAGGCTGGGTATG--
--------------------------TACCTGCGCAAACAAGATCTGCGCGCACGAAGACGCCGTCG-CCGTGGCTAACT
GATC----A--GCGCGGGATCGAGGAGACTCTCCTTGGTTGAAGAAGCAAGACGC-GG----GTCACCGGAGTTGCTCAC
GGCAGGCCGGC--TGCAAGTGCCCGCCGATCACGTGATTTGGGCATAAACGCAGCGGAAAAAGGGCTGGACTGGATCTGA
AGAAG-TCAATCAAACAAGATTCACAACGCAAATTACTAATTAGGCGGCCATGTGTGCCCATCGGCTCTCCTTTTCTCCT
GTGTCAA-------------------------------------------------------------------------
--------------------------------TGTCAACTTCTGTATGAGAGCGAATT----------------------
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------------------TGCAAAAGCACTTTCACTGGGTACACTATCAAGCGAATCGAGATATAACATGTCTTTGTGCA
ATCATGTTTCTGATCATGATTCACCGTGCTGATGGGATTTAGC-------------------------------------
------------------AAAGCTAAACCGC-TGGATGTCTACCACACGATTTAAAACTG--------------------
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>SNPs
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-S----------------------------------------------------------------------S-------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------S-S---
----------------------S---------------------------------------------------------
------------------------------------S--------------S----------------------------
---------------------S---------------------------------------------------S------
--SS----------------------------------------S-----------------------------------
------------------------------------------------------------------------S-------
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-----------S-------------------------S------------------------------------S-----
-------------------------------------------------------------------S------------
---------------------------S----------------------------------------------------
------------------------------S-------------------------------------------------
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----------------------------------------------S---------------------------------
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---------------------S--SS-S-S-S-S----------------------------------------------
----------------SS---S-------SSS-------S-S--------------------------------------
----------S------------------S--------------S-S-----------------------------S---
--S-------------SS-----------------------S----S--S--S---S-----------------------
------------S----------------------------------S--------------------S-S---------
------------------------------S----------------S-S---------S-SS-----SS--------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_70
--------------------------------------------------CAAGATGTGTATGCGTGCCG----------
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>reverse_2190
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-----------------------------ATTTGGATGTTTGCCGCACG-------------------------------
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