>input_sequence_82345
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-----------------------------------------------------------------------ATGATGGTG
ATGGGCTACTTCCGCGCGCCGAGGATCGGCGGCAGGAGGAAGGAGAGGAAGGGCAAGGCCGGCGCGGCGCCGCGGGCCGA
GGAGGCGGGGCTCCGGGAGGCGCTGCTGGAGCCGGCCGGCGG---CGGCGCGCTGCCCAAGGGGTACTTCGCGGTGTACG
TCGGGGAGGAGGCGCGCCGGTTCGTGGTGCCCACGGGGTACCTGCGGGAGCCGGCGTTCCGGGACCTCATGGAGCGCGCC
GCCGACGAGTTCGGCTTCGCGCAGGCCGACGGGCTGCGCGTGCCCTGCGCCGAGGAGGACTTCGAGGAGCTGCTCCGCCG
GCTCCACCGCAAGAACGGCTCCGGCAGCGGCAAGGGGAAGAACTAA----------------------------------
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>chr7A_1_TraesCS7A01G418000
ATATGCAAAAGAAACTTAATTTAAATTTTTGATTTGAAAGATATAAAAGATTGAAAATCAAAATGGTCGCGTGCCCCGCT
CCTGCTTGCCACAAATCATTGTAAATAGTACTCCCTCTACCCCAAAATATAAGAACGTTTTTGATACTACTCCCTCCTTC
CATCTATGTAGGGCCTAATGCGTTTTTCAAGACGGTCTTTAACTATTGACAAGATTAATAGTACATGATATGCATAATGT
GAAAATTATATCATTGAAATCTTCTTTCACATACGAATTTGAGGGTATGCTTTGTGTAAAGCTGCATGTCATATATTGTT
GCTTTAACATTTAGTCAAAGTTAGTCTCGAAAAACACAGTAGACCCTATATAGATGGAAGGAGGGAGTATGCTAGTGTCA
AAAATGTTCTTAAATTTTGGGACGGAGGGAGTAGCTGTAAGGATGTTGT--TGCCTCGGGGGCGACTGGCCGGCGGAGTA
GAATGGATAAACAGGATACGGGATTTCTGCCTGCCTTGGTTCTAGCCATGTTCTTAGACATCCAAAAA------AAAATG
GGGAGCATGTTCTTAGAGGAGTGAAGCTGATTAATAA--------ATAAAACAAGCTAAATTAAACTTCGATACATTATG
TCTGACCCCACCACCATATCAGTATAAAACCAAGGCTAACCCTGGCTGCCGCCTAATCATTTCCCAGTTGCAACTGCACC
TAATCACAAGTTGAGAGCAGAGCACGAGACGAGGAGACCACGTCCTCTTCCACGCACGCCAACCCCACTAGGACCTCCCG
CTAGCTTGCCGGCGATCGTCGACCATGGCGGCCACCAACCCACGACCAGCCGCACCAACTCCACCTCCCGCATGCCTTAA
CTGATCCACCCATCCTCCTCACCTCCGTACACCGCCGGCCCGCTGCGCAGTCACGTGCCGTCCTCCTCCTTCTTCGACGA
-------CGACCGGAAGCTACGACGAGCG-----CCGTGAATCCTGCTGCAGCGCGCGGC---CGGCGACGATGATGGTG
ATGGGCTACTTCCGCGCGCCGAGGATCGGCGGCAGGAGGAAGGAGAGGAAGGGCAAGGCCGGCGCGGCGCCGCGGGCCGA
GGAGGCGGGGCTCCGGGAGGCGCTGCTGGAGCCGGCCGGCGG---CGGCGCGCTGCCCAAGGGGTACTTCGCGGTGTACG
TCGGGGAGGAGGCGCGCCGGTTCGTGGTGCCCACGGGGTACCTGCGGGAGCCGGCGTTCCGGGACCTCATGGAGCGCGCC
GCCGACGAGTTCGGCTTCGCGCAGGCCGACGGGCTGCGCGTGCCCTGCGCCGAGGAGGACTTCGAGGAGCTGCTCCGCCG
GCTCCACCGCAAGAACGGCTCCGGCAGCGGCAAGGGGAAGAACTAAGGAAGGAGGCC---------ATTAGCTAGCAGCT
TAATTGGACGACGCCATGGCAGCGGCACCGGCGGCCGTG------CCGTGCCGCGCCCGCGCGTACGTAGAACGATGAGT
TTATTTACTTTTAAA------CTAGCCAGATCGCTTCT--CGCTTGGTTGAAGATTGTACAGAGTGCAAACGGCCACATG
CATGATGCGTTAGCTTAGCTTCGTGCGTGGTGTGTTGATCGTCATCGTTGGTTTCATGGAAGATTTGAAGTTCATATCAT
CTCCCTTTGGTTTTTACTGCTGACTTGCACACACAAACACACACAAGGTACGGTCTTCAGTACGGAAGTCGCAAAGTA--
-ACTTATG-TACTCTGAAAGTTCGGAAAAGTTTCTCTTTTGGAAAGACAGGAAAAACATGCAGG----CTAGAGGGCGAA
ATTTCTTCTGACATTCTAGAAGGTCCTAGATTCCGACATAGGATTCATCGGGAACGG-ATTCAGCTTGGCTGTTTTTCCA
CAGGGATGAAATTTCTTTTGACATAAGGTTACTCAAATTTTAGACCTAACTTTGCCAATAATTTTGACCGGTAAAACATG
AGTTATGTGCCATGAAAAT---TATATCATTGATAACCTCTTTATAATACGAATTCAATGGTATGCCTCATATGCTGATT
GTCGAATTCCTGGTGAAAGTTAAGCCCAAATTTGAGGAGCCCTTGTATATATTTGGACAAAGGGAATAGGCAGAATCCGA
TCTCCAATATAAGGACCCATATCTATTATTCAGGTTCACTTTTTTTTTTTTTTGCAAAAGAGAACCAAATCTATTGTAAA
GTTTTTTTTGCGGGAATATTATAAAAGTTTAATATAAGTACGAAAGATCTCAAATATAATAAAAAATACATTTAGATCTT
TGGACCATGGAAGAAGCACCGTTGCTGCCTGAATGAGCTGTTTTCGAACATGCTCTGCTCCATTTAAGTCGACGTGCCGC
TGTTCGTTGATCCCATATTGAAGTTGACACGACCTTGTCGA
>chr7B_430
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-----------------------------AGTAGTTGTAGGGATGTTTTGCTGCCTCATGGGCGACTGGCCGGCGGAGTA
GAATGGATAAACAGGATACGGGATTTCTGCCTGCCTTGGTGCTAGTCATGTTCTTAGACATCTAAAAA------AAGGCA
TGT-------------AGGAGTAGAGATGATTAATAATAATACAGATAAAACAAGCTAAGTTAAACTTCGCTACTTTATG
TCTGACCCCACCACCACGCCAGTATAAAGCCAACGCCAACACTGGCTGCCGCCTAATCATTTCCCAGTTGCAACTGCACC
TAATCACAAGTTGG-----GAGCACGAGACGAGGAGACCACGTCCTCTTCCACGCACGCCAACCCCATTAGGACCTCTCG
CTAGCTTGCCGGCGAGCGTCGACCATGGCGGCCACCAACCCACGACCAGCCGCACCAACTCCACCTCCCGCATGCCTTAA
TTGATCCACCGATCCTTCTCACCTCCGTACACCGCCGGCCTGCTGCGCAGTCACGTGCTGTCCTCCTCCTTCGACGACGG
CGGCAGGCGACCGGAAGCTACGACGAGCG-----CCGTGAACCCTGCTGC----CGCGGC---CGGCGACGATGATGGTG
ATGGGCTACTTCCGCGCGCCCAGGATCGGCGGCAGGAGGAAGGAGAAGAAGAGCAAGGCCGGCGCGGCGCCGCAGGCCGA
GGAGGCGGGGCTCCGGGAGGCGCTGCTGGAGCCGGCCGGCGG---CGT---GCTCCCCAAGGGGTACTTCGCGGTGTACG
TCGGGGAGGAGGCGCGCCGGTTCGTGGTGCCCACGGGGTACCTGCGGGAGCCGGCGTTCCGGGACCTCATGGAGCGCGCC
GCCGACGAGTTCGGCTTCGCGCAGGCCGACGGGCTGCGCGTGCCCTGCGTCGAGGAGGACTTCGAGGAGCTGCTCCGCCG
GCTCCACCGCAAGAACGGCTCAGGAAGCGGCAAGGGGAAGAACTAAGGAAGAAGGCCCATTGCTCCATTAGCTAGCCAGA
GC-TTGGACGACGCCATGGCAGCGGCACCGGCGGCCGTGGCGGTGCCGTACCGCGCTCGCGCGTACGTAGAATGACGAGT
TTATTTACTTTTAAAATTAAACTAGCTAGATCGCTTCTCTCGTTTGTTTCTTGATTGTACAGAGTGCAAACGGCCACATG
CATGATGCGCTAGCTTAGCTTCGTGCATGGCGTGTTGATCGTCATCGTTGGTTTCATGGAAGATTGGAAGTTCATATCAT
CCGCCTTTTGTTTTTACTGCTGAATTGCACACACC--------CACGGTACGGTCTTTAGTACGGATGTCGCAAAGTA--
-ACATATAGTACTCGAGAAGTTTCTC-----------TTTGGAATGACAGGAAAAACGAGCATC----CTAGAGGACGAA
ATTTCTGTGGACATTCTAGAAGGTCCTAGATTCTTATCTACCGATTATCGGGGGACTATTTCAGCTTCAATGTGTTTCCA
CAAGCATGAAATTTCTTGTGACATAAGGTCACTCGAATTCTAAGCCTAACTTTGACAGTAATTCTGACTGATAACATACG
AGTTATGAGTCATAAAAATTA-----------------------------------------------------------
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>chr7D_430
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-----------------------------AGTAGTTGTAGGGATGTTGC--TGCCTCGTCGACTA---GCCGGCGGAGTA
GAATGGATAAACAGGATACGGGATTTCTGCCTGCCTTGGTTCTAGCCATGTTCTTAGACATCCAAAAAAAATAAAAAATG
GGGAGCATGTTCTTAGAGGAGTAGAGGTGATTAATAA--------ATAAAACAAGCTAAATTAAACTTCGATACATTATG
TCTGACCCCACACACACACCAGTATAAAACCAACGCTAACCCTGGCTGCCGCCTAATCATTTCCCAGTTGCAACTGCACC
TAATCACAAGTTGA-----GAGCACGAGACGAGGAGACCACGTCCTCTTCCACGCACGCCAACCCCATTAGG---TCTCG
CTAGCTTGCCGGCGAGCGTCGACCATGGCGGCCACCAACCCACGACCAGGCGCACCAACTCCACCCCCCGCATGCCTTAA
CTGATCGACCGATCCCTGTCATCTCCGGACATCGCCAGCCCGCTGCACGGTTCCGTACCGTCCTC---CTTCCACGACGG
CGGCGGCCAACCCGAAGCTACGACGAGCACCGCACCGTGAGTCCTGCTGC----CGCAATCGTCGGCGACGATGATGGTT
ATGGGCTACTTCCGCGCGCCCAGGATCGGCGGCAGGAGGAAGGAGAGGAAGGGCAAGGCCGGCGCGGCGCCGCAGGCCGA
GGAGGCGGGGCTCCGGGAGGCGCTGCTGGAGCCGGCCGGCGGCGACGT---GCTCCCCAAGGGGTACTTCGCGGTGTACG
TCGGGGAGGAGGCGCGCCGGTTCGTGGTGCCCACGGGGTACCTGCGCGAGCCGGCGTTCCGGGACCTCATGGAGCGCGCC
GCCGACGAGTTCGGCTTCGCGCAGGCGGGCGGCCTGCGCGTGCCCTGCGCCGAGGAGGACTTCGAGGAGCTGCTACGCCG
GCTCCACCGCAAGAACGGCTCCGGCAGCGGCAAGGGGAAGAACTAAGGAAGAAGGCCCATTGCTCCATTAGC----CAGA
GC-TTGGACGACGCCATGGCAGCGGCACCGGCGGCCGTGGCCGTGCCGTGCCGCGCCCGCGCGTACGTAGAATGATGTGT
TTATTTACTTTTAAAAT-----TAGCTAGATCGCTTCG--CGTTTGGTTCTTGATTGTACAGAGTGCAAACGGCCACATG
CATGATGCGTTAGCTTAGCTTCGTGCATGGTGTGTTGATCGTCATCGTTGGTTTCATGCAAGATTTGAAGTTCATATCAT
CTCCCTTTCGTTTTTACTGCTGATTTGGACGAAG--------ACACGGTACGGTCTTCAGTACGGAAGTCGCAAAGTAGT
AACATATACTACTCTGGAAGTTT-TC-----------TTTGGGATGACAGGAAAAACAAGCATCCTAGCTAGAGGACGAA
ATTTCTTTGGACATT-------GTCCTAGATTCTTATCTACCGATTATCGGGGGACTAATTCAGCTTCAATGTTTTTCCA
CAAGCATGAAATTTCTTGTGACATAAGGTCACTCGAATTCTAAGCCTAACTTCGACAGTAATTCTGACTGATAACATACG
AGTTATGAGTCATAAAAATTACTATATCATTAAATACCTCTTTCTAACACGAAT--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S------------------S---------------------
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----------------------SS--S-----------------------------------------------------
----------------S-S--------------S----------------------------------------------
--------------SSSSS------------------------------------------------S---------S--
---------------S----------------------------------------------------------------
----------S-----S-------------------------------------------------------SS-----S
--------------------------------------------------SSSS--------------------------
--------------------S----------------------------------------------------S------
-----------------------------------------------SSSS---S-------------------------
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---------------------------------------------------S------------------------SSSS
SSS---------------------------------------------------------------------S-------
--------------------------S---------------S------SSS----------------------------
--------------------------S-----------------------------------------------------
--------S--------------S----------SSSSSSSS---S----------------------------------
---S---S--------S-----SSSSSSSSSSSSSSS-------S-------------S---SS-----------S----
-------SS------------------------SS-SS--SSSS-S------SSSSS----------SSS----------
--S-S------------S-----------S----S----S--SS----------S--S-----S----S-S---S-S-S-
-------S-S---S-----------------S-SS--------S---S------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_97
-----------------------------------------------------------------------------GCT
CCTGCTTGCCACAAATC---------------------------------------------------------------
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>reverse_1437
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----------------------------------------------------------------------------AGCT
TAATTGGACGACGCCA----------------------------------------------------------------
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