>input_sequence_82343
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---------------------------------------------------ATGAAGTATTGCCAAGTAACACTCCTCCT
GGCCTTGGCCGTTCTTGCCTCATCACCAGGTACATACTTTGTGTTATTGTGTACCATATAACATGCACGACAACTAAATA
TCAGTGTAGTTTTCTCTCCATCCATCTCCGCATCGGTATATTTGGGATTTATTTACCTATTCTTTCTTATTGTGTCAATT
GTGCAAGCAGTCATGGCGACCAAGTGCCCTCCAGAGTACACCTGCACCAAGTACATCAACCAGGGCCCATGTGACGCCAC
CAAGTGCATGATGGACTGTGTGAGCGCGTACAAGGGCGCAGGGGAAGGCCAGTGCTTCCCTCAAGGATGCAGGTGCTCCT
ACTGCTGCAAGCCGCATCAAT---GA------------------------------------------------------
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>chr6D_1_TraesCS6D01G314800
TTTCCCTCCCACTAAAAACCGAATAGGTTCGCTCGACCCTTCCCGTTGGTTTTTCTCCTGCCTTAGTTTTT-CTCTCCAG
CCCCCCCTGGTTTACAAAAATCTAGTAAAAT-TG-GTGTTTTTCTTTCTTTTCCTACTAGCAATCATGCCCTGCACTAAC
TCACTGAAATCTCAGCGAAACCATAAACTGCATTAACTCAATCAAATCAAATCAGATCAAATCTCATCAAAACCTCAACT
AAATCAATATTTTCCTTGCATCTCGTAACCATATCCAAATCAAATCTTTCCAAAATCTCAACTAAATAAATTTTTTAATT
GCCTTCCCGTATTCATACTCA-----AATCAAATCAAATCTTAACAAAATCTAGAATATCTCTACTATTAAAATGTAATT
GGTACATGCACCTCACCGGCAACCGCCCCATCCATGAGGGTTTTCCCCTCCCACTGAAAATCAAATCGATTCGCTCGACC
CTCCCTTTGGTTTTTCCCTGCCCGAATTTGGTTTATTTCTCATATTGCCCCCTGGTTTGCAATAATCTAAACCAAATCGA
TGTTTTCCGTTCCTTGTACAATTGGTCTATGGTGCTCCGGCATTTAACGCTAACATGTTTAGCATGCAAGTAAAATCATA
CTTATATCAACTTCATTGCTATCCAGGTAATTATATCCAACCGAATATCAACATGCAATTAGTGTCTTTCCTAATATTAA
CGTCCGATGCAATTAACATTTTTTTCTAATATAACCTTGTAATTATATTTACCTAATATCAACGTACATTCAATATCTTT
CCTAATTTTAGCGTGCAATGCAATTAATTTCTTTGGTGATATAGCGTGCATTTCACGTACACGATTACTAGTTTGGTAAA
AAATAAAGC---AATTCCTAAAACACCAAGCACGACAAGACTATAAAAGTGTCACAATTACTTGAGGAACATGTCGTGCA
TAGACGTATCATCACATATCCCATCCTCTTGAGTCTGGATTTCTTGAAGACATGAAGTATTGCCAAGTAACACTCCTCCT
GGCCTTGGCCGTTCTTGCCTCATCACCAGGTACATACTTTGTGTTATTGTGTACCATATAACATGCACGACAACTAAATA
TCAGTGTAGTTTTCTCTCCATCCATCTCCGCATCGGTATATTTGGGATTTATTTACCTATTCTTTCTTATTGTGTCAATT
GTGCAAGCAGTCATGGCGACCAAGTGCCCTCCAGAGTACACCTGCACCAAGTACATCAACCAGGGCCCATGTGACGCCAC
CAAGTGCATGATGGACTGTGTGAGCGCGTACAAGGGCGCAGGGGAAGGCCAGTGCTTCCCTCAAGGATGCAGGTGCTCCT
ACTGCTGCAAGCCGCATCAAT---GAACTATTTAACTGAGCTTGGCCGGCACGCCGTTTGGAGACGTGTTGATGGATGAT
ATGGTGCAAATTGCAAACTTAACTAGAATTTGTTTATTCTGCTTTTTTGAAGTAGTTGTAAGAGACTCTTGTAGCATGAT
CGTCGTTCTATCTAATATGAAGAGTAAAAATAAATGGGCGTATTGTAGGTTATATTTAGGGGGCAACTACGCAGTGTGCG
CTTACTTTTTCCTTACA-GAGTGCCATGTCCCGAAAACCCACCTCCTTCCATAAATAGAAAGACCCAAAGTATGTGGTTC
TCACTGGATCGTGTAGCATATGTTGAGCAGTA----TTTTTTGCCATGGCTTGAAATCCCAAAACCCAAATGCTAC----
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---------------------------------------------------------------------CTTTCACTCCA
CCTTTTGCGCACACCCTCCCTGCTTACTTTTCGTATCATTTCCACTAAATGACCCTTTTTGAAAGTTAAGCAGCCCTTCA
AAAAGATTATTTCCAGGTCTGCCCTTAGCGAGTTGTGTAGCAAGGACATAGGCACACCCCAGGCCAACCTGAAAACTAAA
TTAATGAACAGTATCTACAATGACAAAAATTGATACCGTGAATGAAGAAATGTGTAGCTACGCCCTAGGCCAAGTCCCCT
GCTACCTGGGGCCTAGCTACGTCTCTGCCCTCGGGTATACATGCCAGTATATGTCTCTATTTATGGATAGAAGCTAGAGT
TAAAATTACATCCAGAGCCTATTGAGGCCCACATACCTCTTTAAAAGAAGAAGGTGATCCATTCTCCGTTGATATAAAAT
CAAAACACATTCACCATCCTTTGGTGCTCCTTTGCTAAATAACACTCCTAGGAAAACTAAAAATCTTCCCACTTCTACCC
CACAACAAATTTGGGATGTCGAAAGTACATCTTCTATTACATCCAAAAAATAAAGAGATAAAGAAACAATAGTTTTTGGT
AGCATAATTTTTACCATAGGTGCGGAATATACATTGCATGTATAAAAAATGATTGCTTTCAGAA
>chr6B_1
TTTCCCTCCCACTAAAAACCGAATAGGTTCGCTTGACCCTCCCCGTTGATTTTTCCCCTACCTTAGTTTTTTCTCTCCGG
G-CCCCCTGGTTTGCAAAAATCTATTCAAAT-TTTGTGTTTTTCTTTCTTTTCCTACTAGAAATCATGCCTTGCACTAAC
TCACTGAAATCTTAGCAAAACCATGATCTGCATTAACTCAATCAAATCAAATCAGATCAAATCTCATCAAAACCTAAACT
AAATCAATATTTTCCTTGCATCTCAT-ACCATATCAAAATCAAATCTTTCCAAAATCTCAACTAAATCAAAATTTTGATT
GCCTTCCCGTATTCATACTGG-----AATCAAATCAAATCTTACCAAAATCTAGAATATCTCTACTATTAAAATGTAATT
GGTACGTGCACCTCACCGCCAACTGCCCCATCCATGAGGGTTTTCCCCTCCCACCGAAAACAAAATCGATTCGCTCGGCC
CTCCCTTTGGTTTTCCCTCGCCCGACTTTGGTTTATTTCTCATATTGCCCCATGGTTTGCAATAATCTAAACCAAATCGA
TGTTTTCCATTCCTTGTACAATTGGTCTATGGTGCTCCGGCATTTTACGCTAACATGTTTAGCATGCAAGTAAAATCATA
CTTATATCAACTTCATTGCTAACCATGTAATTATATCCAACCTAATATCAACATGCAATTAGTGTCTTCCCTAACATGAA
CGTCTAGTGCAATTAACA-TTTTTTCTAATATAACATGGTAATTATATTTACCTAATATCAACGTACATTCAATATCTTT
CCTAATTTTAGCGCACAATGCAATTAATTTCTTTTCTGATATAGCATG-ATACCACGTACACGATTACTAGTTTGGTAAA
AAAAATAAAGCAAATTCCTAAAACACCAAGCAGGACAACACTATAAAAGTGCCACAATTACTTCAGGAACATGTCGTGCA
CAGACGTATCATCTCATATCCCATCCTCTTG--TCTGGATTTCTTGAAAACATGAAATATTGCCAAGTAACACTCCTCCT
GGCCTTGGTCGTTCTTGCCTCATCACCAGGTACATATTTTGTGTTATTGTGTGCCATATAACATGCACGACAACTAAATA
TCAGTGTAGTTTTCTCTCCATCCATCTCCGCATTGGTATATTTGAGATTTATTTACCTATTCTTTCTTATTTTGTCAATT
GTGCAAGCAGCCATGGCGACCAAGTGCCCTCCAGAGTACACCTGCACCAAGTACATCAACCAGGGCCCATGTGACGCCGC
CAAGTGCATGATGGACTGTGTGAGCTCGTACAAGGGCGCAGGGGAAGGCCAGTGCTTCCCTCAAGGATGCATGTGCTCCT
ACTGCTGCAAGCCGCATCAACGAAGAACTATTTAACTGAGGTTGGCCGCCACGCCGTTTGGAGACGTGTTGATGGATGAT
GTGGTGCAAATTGCAAACTTAATTAGAATTTGTTTATTCTGCTTTTTTGAAGTAGTTGTAAGAGACTCTTATAGTATGAT
CGTCGTTCTATCTAATATGAAGAGTAATAATAAATGAGTGTATTGTAGGTTATATTTAGGGGGCAACTACGCAGTGTGCG
CTTACTTTTTTCTTTACGGAGTGCCATGTCCCGACAACCCACCTCCTTCCATAAATAGAAAGACCCAGAGTATGTGGTTC
TCACTGGATCGTTTAGCTGGTGTTGAGCAGTC----TTTTCTGCCATGGCATGAAATCCCCAAATCCAAATGCTAC----
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---------------------------------------------------------------------CTTTCACTCCA
CCTTTTGCGCACACCCTCAATGCTTACTTTTCGTATCATTTCCACTAAATGACCCTTTTTGAAAGTTAAGAAGCCCTTCA
AAAAGCTTATTTCCAGGTCTGCCCTTAGCGAGTTGCGTAGCAAGGACATAGGCACACCCCAGGCCAACCTTAAAACTAAA
CTAATGGACAGTGTCTACAATGACAAACATTGATACCGTGAACGAAGAAATGTGTAGCTATGCCCTAGGTCAAGGCCCCT
GCTACCTGGGGCCTAGCTATGTCTCTGCCCTCGGGTATACATGCCAGTATATGTCTCTGTTTATGGATATAAGCTAGAGT
TAAAATTACATCCAGAGCCTGTTGAGGCCCCCATACCTCCTTAAAAGAAGAAGGTGATCCCTTCTTCATTGATATAAAAT
CAAAACACATTCAACATCCTTTGGTGCTACTTTGCTAAATAACACTCCTAGGATAACTAAAAATCTTCCCACTTCTACCC
CACAACAAATTTGGGATGTCGAAAGTACATCTTCTATTACATCCGAAAAATAAAGAGATGAAGAAAAAATAGTTTTTGGT
AGCATAATTTTGACCATAGGTGCGGAATATACATTGCATGTATAAAAAATGATTGCTTTCGGAA
>chr6A_1
TTTCCCTCCGACTAAAAACCGAATAGGTTCGCTCGACCCTCCCTGTTGGTTTTTCCCCTACTTTAGTTTTT-CTCTCTAG
G-CCCCCTGGTTTGCAAAAATCTAATAAAAAATG-GTGTTTTTCTTTCATTTCCTACTAAAAATCATGACATGCACCAGC
TCACTAAAAGCTTAGCAAAACCATGAACTGCATTAACTCAATCAAATCAAATCAGATCAAATCTCATCAAAACCTCAACT
TGATCAATATTTTCCTTGCATCTAGTAACCATATCCAAATCAAATCTTTCCAAAATCTCAACTAAATCAAAATTTTGATT
GCCTTCCCGTATTCATACTCAAATCAAATCAAATCAAATCTTACCAAAATCTAGAATATCTCTACTATTAAAATGTAATT
GGTACATGCACCTCGCCGCCAACCGCCCCATCCATGAGGGTTTTCCCCTCCCACTGAAAATCAAATCGATTCACTCGGCC
CTCCCTTTGGTTTTTCCCCGCCCGGCTTTGGTTTATTTCTCATATTGCCCCCTGGTTTGCAATAATCTAAACCAAATCGA
TGTTTTCCGTTCCTTGTATAATTGGTCT----------------------------------------------------
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-----------------------------------ATGGTAATTATATTTACCTAATATCAACGTACATTCAATATCTTT
CCTAATTTTAGCATGCAATGCAATTAATTTCTTTTCTGATATAGCGTGCATTCCACGTACACGATTACAAGTTTGGTAAA
AAATAAAGC---AATTCCTAAAACACCAAGCAAGACAACACTATAAAAGTGCCACAATTACTTCAGGAACATGCCGTGCA
CAGACGTATCATCACATATCCCATCCTCTTGAGTCTGGATTTGTTGAAGACATGAAGTATTGCCAAGTAACACTCCTCCT
GGCCTTGATCGTTCTTGCCTCATCACCAGGTACATACTTTGTGTTATTGTGTACCATATAACATGCATGACAACTAAATA
TCAGTGTATTTTTCTCTCCATCCATCTTCGCATTGGTATATTTGGGATTTATTTACCCATTCTTATC----GTGTCAATT
GTGCAAGCAGCCATGGCGACCAAGTGCCCTCCAGAGTACACCTGCACCAAGTACATCAACCAGGGCCCATGTGATGCCGC
CAAGTGCATGATGGACTGTGTGAGCGCGTACAAGGGCGCAGGGGAAGGCCAGTGCTTCCCTCAAGGATGCAGGTGTTCCT
ACTGCTGCAAGCCGCATCAACGAA---CTATTTAACCGAGCTTGGCCACCACGCCGTTTGGAGACGTGTTGATGGATGAT
GTGGTGCAAATTGCAAACTTAACTAGAATTTGTTTATTCTGCCCTTTTGAAGTAGTTATAAGAGACTCTTGTAGCATGAT
CATCGTTCTATCTAATATGAAGAGTAATAATAAATGGGCATATTGTAGGTTATATTTAGGGGGCAACTATGCAGTGTGCG
CTTACTTTTTTCCTTATGGAGTGCCATGTCCCGACAACCGACCTCCTTCCATAAATAGAAAGACCCAGAGTATGTGGTTC
TCAATGGATCGTGTAGCTGGTGCTGAGAAGTACTTTTTTTTTGCCATGGCTTGAAATCCCAAAACCCAAATGCTACCTTT
CACTCCGGGAAAGTATCTAGTGCTCCCAGACTTGGGGTGCTCCCGGTGCTCCAAATGTCTGAAAAATATTTTTAAAATGT
TCAAAAATTTCTGAAAAAAATGCAGCAGATCAACGGAACATCGATGTCTCTTGTCACAAAATTTCAAATCAAAATTCGAA
ACATTGCTCGAGATACAAAATTGACAAGAGACATCGATGTTCCGTCGATACGCTGCATTTTTTTTAGAATTTTTTGAGCA
TTTTAAAAAATGTTTTTCACATCGGAGCACCGGGAGCACCCTAGGCCTGGGAGGACTACATACTTTCCCCTTTCACTCCA
CCTTTTGCGCACACCCTCACCACTTACTTTTCGTATCATTTCCACCAAATGACCGTTTTTGAAAGTTAAGCAGCCCTTCA
AAAAGCTTATTTCCAGGTCTGCCCTTAGTGAGTTGCGTAGCAAGGACATAGGCACACCCCAGGCCAACCTTAAAACAAAA
CTAATGATCAGTATCTACAATGACAAACATTGATACCGTGAATGAATAAATGTGTAGCTACGCCCTAGGCCAAGGCCCCT
GCTACCTGGGGCCTAGCTACGTCTCTGCCCTCGGGTATACATGCCAGTATATCTCTCTGTTTATGGATAGAAGCTAGTGT
TAAAATTACATCCAGAGCCTGTTCATGCCCACATACCTCCTTTAAAGAAGAAGGTGATCCCTTCTCCATTGATATAAAAT
CAAAACACATTCAACATCCTTTGGTGCTACTTTGCTAAAGAACACTCCTAGGAAAACTAAAAATCTTCCGACTTCTACCC
CACAACAAATTTGGGACGTCGAAAGTACATCTTCTGTTACATCCAAAAAATAAAGAGATGAAGAAACAATAGTTTTTGGT
AGTATAATTTTGACCATAGGTGCGGAATATACATTGCATGTATAAAAAATGATTGCTTTCAGAA
>SNPs
----------------------------------------S--------------S---S--------------------
SS-----------S----------S-----------------------------------S---------S---------
------------S---S-------S-------------------------------------------------------
-------------------------------------------------------------------S--SS----S---
-------------------------------------------S------------------------------------
------------------S----------------------------------------------------------S--
------------------S------S------------------------------------------------------
---------------------------------------------S----------------------------------
---------------------S---S----------------S-------------------------S-----S--S--
----SSS-----------S----------------S-S------------------------------------------
----------------------------------SS----------------S---------------------------
--------------------------------S-----S------------S-----------S----------------
S-------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------S-------------------------------------------------------------------S-
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--------------------S---------------------------S-------------------------------
S-------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
----------S---SSS-----------------S--------------------------------S------------
-----------------SSS------------------------------------------------------------
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------------------S-------------------------------------------------------------
-----S-----------------------------S----------------------------------S---------
S--------------------------S----------------------------------------------S-----
----------------------------------------------------------S---------------------
--------------------S------------------S--------------------S------S------------
-------------S--------------S---------------------------------------------------
-----------------------------------------------------------S--------------------
-----------S----------------------------------------------------
>forward_506
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------TTGGTTTTTCCCTGCCCGAA------------------------------------------------------
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>reverse_1616
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---------------CAGAGTGCCATGTCCCGAAA---------------------------------------------
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