>input_sequence_82336
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--------------------------------------------------------ATGCTCCGCCGCGCGGCCTCCTTG
CTACGCGGGCGCTCGGCCTGGATCCCCCGCCGGCCAGTGGCGGCCGCGGCGACACTGGCCCGACGCCGCCCGGAGCCGGA
GGCCCGCCCCCGCGCCGTCGAGGGCCGGGGCTACGCGCGCATGGCGCGGCGGATGCCGCCCACGAGGCCTGACGGGTACT
CCACCTCCGACGGGGAGGCCGACGCCTACGGAGACGTCGAGGACC---------TGGAGCCGGCGGCCGCCGCGGACGGC
GAGGAGGACGCCTCCGATGGGGAGGGGTGGGACGGGTTCACGCTGGACATGGGCGCCGGATCCATCGTGGACAATGACGA
TGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGAAGTAA-------------------------------------------
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>chr5D_1_TraesCS5D01G420500
TTTGCTCAGACAATTTTAACAAATTTATCACATTTTCATAGCTAACATCACCACAACGCTCCCACACATGTCTCCTCTCC
CCTGCGCCAAGATCCATGCCGTCATCCA------GCTAGTACGTTCGCTGAAGATTGTTAAAAACTGATGTCAGCCATAT
AGCACTTTCAATGGTGAAAACTCTTGTCTAATCAAGTACGCCCACTGACATTTCGAGTGAAAATAACAGAAACTTTTTTG
ATTTCCCCTAGAA----------AGTACTTTGGACAAAAAAATACCTTAGGAATTGCTCTTTTTCATCAGAAGAAAACTG
GGTGAAAGCTCGCCCTCTTTTTTTTTTTGAGGGAATGGCATCATGGCGGTTTATATTTCATGTTAGAATAAAGATACATC
GTTTAATAAAATGTCTACTAGAAACCCCGGAGGCTCCGACTTCCAGACAATTGTTCGAGAAGTCTCCGAGTTCCTAGACA
ATACATCCGCCGCCATATTGGCCCCTTTATTACTCAAGATTTTCGTCAAAAAAATTATTTTTTGAGAAATAAGAGTTTCG
TCAATAGAAATTGAAAAAACAAGTCCTACTTTTAATGGGCTCGGCTATTCTGCACAGGCCGGTCTATCCACAACGCTCCC
ACACGCTGGGCTTTCGTACGGGCCTTGTCGGCCTTCGCGCGCGGGCGTTCCTGAAAGGTCTGGTGTCCCTTAGGAAAAAA
AAAAGGAGTCCCCACGACGAGAAGGAGAAATAATTCCGCCGCATCTTCTTTGTCCACCCCCTCCTCCACATCGCCGCCGT
TTCATTGTTGCAGAATCCCGCGAGTTCGTCGACGGACCGGCCCGGCCGCATCGCTCGCCGCCGTTTCGCCCCGCGGCTTC
GGTGACATCGCGGTACGCTGTCCTTCCGCCCCTGTCGTTCTACCCTCTGGGGAAAGGTTCAGTATCGCCGCTCAGGCACA
GAGGCACTCATCCGGTTCCCACGCTTTGGCGCAGCAGAGCACAGGCGCGGCACGGCATGCTCCGCCGCGCGGCCTCCTTG
CTACGCGGGCGCTCGGCCTGGATCCCCCGCCGGCCAGTGGCGGCCGCGGCGACACTGGCCCGACGCCGCCCGGAGCCGGA
GGCCCGCCCCCGCGCCGTCGAGGGCCGGGGCTACGCGCGCATGGCGCGGCGGATGCCGCCCACGAGGCCTGACGGGTACT
CCACCTCCGACGGGGAGGCCGACGCCTACGGAGACGTCGAGGACC---------TGGAGCCGGCGGCCGCCGCGGACGGC
GAGGAGGACGCCTCCGATGGGGAGGGGTGGGACGGGTTCACGCTGGACATGGGCGCCGGATCCATCGTGGACAATGACGA
TGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGAAGTAATCCGAGGGTCGCCGGCGAGCCGGAAG----------CGCAAGC
AAGGTGTTTGTTGAAATGACCAAGGCCATTGTTTGCATGCTCGTTGCTCCAATACCCATGTACTACTAACAATGGTAGTA
TTTGAAGAGTTGAACTGTCAAATAATCCGTGTACGACTCCCGATTCTAGTAGTTGGTTTTCACCTTGGATTG--------
------------------------GGA-TTCACCGTTCGGTTGTAGCAGCTCTCCTAAA-CCGTGCCTCACATTGCTTTT
TTATTTACGGCAGACTCCTAGCTACTGCTCCTACAAGATGCGAGAGTCCCTGGATCGCACGCCCAGTTACCTCGCGCTCG
CGGTGG-----ATCTCCTTCTCGACATCATCG-------CTCCCGGTGGATCGAGACGGGAGGAGA--------------
-------------ACAACTCAACAATGTGGAAACGTTGGTGCGGCCGGACAGCGGCGGTGCCGTCGTGGGAGCCCCTCCC
GGTGGATCTCCTTCTCGAAATCATTGCTCGCACTGACGTTACAACCGTCGTCCGCTGTGCCGCGACCGGCAGGATCCTTC
GGCGCGGCATCCTCGACCCGGCCTTCCGGCGCAGCATCATGGCCCACGACCACGACGGCTTTGATCCCGCCCTCCTCCTC
GGCATCTCCTACCGGGAACGCGGCGATGTCACGACCCACCGCGTCATCCACACCCCAGGGCCAACAAAGCTCACTGCCCG
CCTCGACGAACTTAGCTTCCCGGACTCGCTCAGGGCCGTGGCCTCGCG-----GGGCAGCCTGGTCGTCCTCTGCCGGCA
CCCCCAAGGCCTTGATGTCAAGCTGCGGGTGTGTGATGCATTCACCGGTCATGTTACCTCACTCCCACCCGCGAGTTTGC
CCGGCGTGTACCTCCACGTCGTGCTCAGCATCGGTGACGCCGGCCGCTCCTTCGAGCTGCTCGTCGCGGACAAGAACATA
CAGTTCCACCAGACATTCTCGTCCAAGGGCGGTCAATGGAGCGCCGTCCACCAGGTCTCCGTCCCCCACCCAGACAAACA
TGTCG
>chr5A_1
TTTGCTCAGATAATTTTGACAAATTTATCACATTTTCATAGCTAACACCACCACAACGTTCCCACACGTGTCTCCTCCCT
-CTGCGCCAAGATCCATGCCGTCATCCAAAGGCAGCTAGTACGTTCGCTGGAGATTGTTAAAAACCAACGTCAGCCATAT
AGCGCTTTCAATGGTGAAAACTCTTGTCTAATCAAGTACGCCCACTGACATTTCAAGTGAAAGTAACAGAAACTTTTTTG
GATTTCCCACCAATCTAGAAGGTAGTAATTTGGATGAAAAAGTATCTTAGAAATTGCACTTTTTCATCAGAAGAAAACTG
GGTGAAAGCTGGC-------------------------------------------------------------------
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---------------------CCCCTTTATTACCCAAGAGTTTCGTCAATTTTT---TTTTTTGTGAAATAAGAGTTTAG
TCAATAGAAATTGAAAATACAAGTCCTACTTTTAATGGGCTCGG-TATTCTTCACAGCC----CTATCCACAACGCTCCC
ACACGCTGGGCTTTCGTACGGGCCTTGTGGGCCTTCGCGCGCGTGCGTTCCAGAAACGTCTGGTGTCCCTTAGTAAAAAG
AAAAGC-GTCCCCACGACGAGAAGGATAAATAATTCCGCCGCATCTTC-TTGTCCACCCCCTCCTCCACATCGCCGCCGT
TTCATTGTTGCAGAACCCGGCGAGTTCGTCGACGGACCGTTCCGGCCGCATCGCTCGCCGCCGTCTCGCCCCGCGGCTTC
GGTAAAATCGCGGTACGCTCTCCTTCCGCCCCTATCGTTCTAGCCTCCAGGGAAAGGTTCAGTGTCGCCGCTCAGGCACA
GAGGCACTCATCCGGCTCCCACGCTTTGGCACAGCACAGA-----CGC-GCACGGCATGCTCCGCCGCGCGGCCTCCTTG
CTACGCGGGCGCGCGGCCTGGCCCCCTCGCCGGCCAGTGACGGCCGCGGCGACACTGGCCCGACGCCGCCCGGAGCCGGA
GGCCCGCCCCCGCGCCGTCGACGGCCGGGGCTACGCGCGCATGGCGCGGCGGATGCCGCCCACGAGGCCTGACGGGTACT
CCACCTCCGACGGCGAGGCCGACGCCTACGGAGACGTCGAGCACCTGGAGGACGTGGAGCCGGCGGCCGCCGCGGACGGC
GAGGAGGACGCCTCCGATGGGGAGGGGTGGGACGGGTTCACGCTGGACATGGGCGCCGGATCCATCGTGGACAATGACGA
TGAGGAGGAGGAGGA---AGAGGAAGTAGATAAGTAATGCGAGGGTCGCCGGCGAGCCGGAAG----------CGCACGC
AAGGTGTTTGCTGAAATGACCAAGGCCATTGTTTGCATGCTCGTTGCTCCAATACCCATGTACTCGTAGC-ATGGTAGTA
TTTGAAGAGTTGAACTGTCAAATAATCCGTGTACTACTCCCGGTTCTAGTAGTTGGTTTTCACCTGGGATTG--------
------------------------GGAATTCACAGTTCGGTTGCAGCAGCTCTCCT-AA-CCGTGCCTCTCATTGCTTTT
TTATTTACGGCAGACTCCTAGCTACTGCTCCTACAAGATGCGAGAGTCCCTGGATCGCGCGCTCAGGTACCTCGCGCTCG
CGGTGG-----ATCTCCTTCTCGACATCATCGCTCCCGCCTCCCGGTGGATCAAGAC-----------------------
-----------------------AATGTGGAAACGTTGGTGCGGCCGGACAGCGGCGGCGCCGTCGTCGGAGGACCTCCC
GGTGGATCTCCTTCTAGAAATCATTGCTCGTGCCGACGTCACAGCCATCGTCCGCTGTGCCGCGACCAGCAGGATCCTTC
GGCGCGGCATCCTCGACCGGGCCTTCCGGCGCAGCATCATGGCCCGCCACCACGGCGGCTTCGATCGCGCCCTCCTCCTC
GGCGTCTCCTACCGGGAACGCGGCGATGTCACGACCCACCGCGTCATCCACACCCCAGGGCCAACAAAGCTCGCTGCCCG
CCTCGACGAACTTAGCTTCCCGGACCCGCTCAGGGCCGTGGCCTCGCGGGCCGGGGCAGCCTGCTCGTCCTCTGCCGGCA
CCCCCAAGGCCTTGATGTCAAGCTGCGGGTGTGCGACGCATTCACCGGTCATGTCACCTCACTCCCACCCGCCAGTTTGC
CGGACCCGTGCCTCCACGTCGTGCTCAGCATCGGTGACGCCCGCCGCTCCTTCGAGCTGCTCGTCGCTGACAAGAACATA
CAATTCCACCAGACATTCTCGTCCAAGAGCGGTCAATGGAGCGCCGTCCACCAGGTCTCCGTCCCCCACCCAGACAAACA
TGTCG
>chr5B_829
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--------------------------------------------GCCGCTCCGCTCGCCGCCGTTTCGCCCTGCGGCTTC
GGTAACATCGCGGTACGCTCTCCTTTCGCCCCTGTCGTTCTAGCTTCTGGGGAAAGGTTCAGTAT---------------
---GCACTCATCCGGTTCCCACGCTTTGGCACAGCACAGA-----CGCGGCACGGCATGCTCCGACGCGCGGCCTTCTTG
GTACATGGGCGCGCGGCCTGGCTCCCTCGCCGTCCAGTGACGGCCGCGGCAGCACTGGTCCGACGCCGCCCGGAGCCGGA
TGCCCGCCTCCGCGCCGTCGAGGGCCGGGGCTACGCGCGCATGGCGCGGCGGATGCCTCCCACGAGGCCTGACGGGTACT
CCACATCAGACGGCGAGGCCGACGCCTACGGCGACGTCGAGGACCTGGAGCCGGTGGAGCCGGCGGCCGCCGCGGACGGC
GAGGAGGACGCCTCCGATGGGGAGGGGTGGGACGGGTTCACGCTGGACATGGGCGCCGGATCCATCGTGGACAATGACGA
TGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGAAGTAATGTGAGGAAGAGGAAGAGGAGAAGTAATGTGAGGGTCGCAAGC
AAGGTGTTTGTTGAAATGACCAAGGCCATTGG-------------------------------------CAATGGTAGTA
TTTGATGAGTTGAACTGTTAAATAATCCGTGTACTACTCCCGATTCTAGTAGTTTGTTTTCACCTTGGATTGGGATTCAC
CGTTCGGTTACCCGCATAAAAAAAGGGATTCACCGTTCGGTTGTAGCAGCTCTCCT-AAACCGTGCCTCCCATTGCTTTT
TTATTTACGGCAGACTCCTAAGCTAG-----TACAAGATGCGAGAGACCCTAGACCGCACGCCCAGTTACC------TCG
CGGTGGATCTCATCTCCCTCTCGAAATCATCG-------CTCCCGGTGGATCAAGACGAGAGGGCCAAAAAGAAAAGGCA
ATGGGAGTGGTGCACAGCTCCACAATGTCGAAACGTTGGTGCAGCCGGACAGCGGCGGCGCCGTCGTGGGAGGCCCTCCC
GGTGGATCTCCTTCTCGAAATCATTGCTCGCACAGACGTTACAACCATCGTCCGTTGTGCCGCGACCAGCAGGATCCTTC
GGCGCGGCATCCTCGACCCGGCCTTCCGGCGCAGCATCACGGCCCACGACCACGGCGGCTTTGATCCCGCCCTCCTCCTC
GGCGTCTCCTACCGGGAACGCGGCGATGTCACGACCCACCGCGTCATCCACACCCCAGGGCCAACAAAGCTCGCTGCCCG
CCTCGATGAACTTAGCTTCCCGGACTCGCTCACGGCCGTGGCCTCG-----CGGGGCAGCCTGCTCGTCCTCTGCCGGCG
TCCCCAAGGCCTTGATGTCAAGCTGCGGGTGTGCGACGCATTCACCGGTCATGTCACCTCACTCCCACCCGCCAGTTTGC
CCGACGCGCACCTCCACGTCGTGCTCAGCATCGGTGACGCCGGCCGCTCCTTTGAGCTGCTCGTCGCTGACAAGAACATA
CAGTTCCACCAGACATTCTCGTCCAAGGGCGGTCAATGGAGCACCATCCACCAGGTCTTCATCCCCCACCAAGAGAAACA
TGTCG
>SNPs
----------S------S-----------------------------S----------S--------S---------S-S
S-------------------------------------------------S--------------SS-S-----------
---S--------------------------------------------------S-------S-----------------
SS--S---SSS----------------S------SS-----S--S-----S------S----------------------
----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------S-----S---------SSSSSSSS-------S-------------S-
-----------------S--------------------------S------S-----S-SSSS-----------------
----------------------------S--------------S-------S----S----------------S-----S
-----SS-------------------S---------------------S-------------------------------
---------------S--S--------------------SS---------------------------------------
---S---------------S----------------------S-------------------------------------
------------------------------S-----S--SSSSSS-----------------------------------
------------S--------S----S------------S----------------------------------------
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-------------S------------------------------------------------------------------
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------S-----------S-------------------S-----------------------------------------
----------------------------------------------------------------SS--S-----------
----------------------------------S---------------------------------------------
--------------------------------------------------------S------------S----------
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----------------------------------------------------S-----S----SSS--------------
----------------S---S-------------------------------------S-------------S-------
---------------------------------S------------S--------------------S------------
------------------------------------------------------S-------------------------
---S--------------------------------------------------------------------S-------
---------------------------------------------------------------S----------------
---------------------------------S--S-----------------S-----------------S-------
---S--S------------------------------------------------------------S------------
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>forward_494
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--------------------------------------------------------------------------TAGACA
ATACATCCGCCGCC------------------------------------------------------------------
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>reverse_1657
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--------------------------------------------------------AAACCGTGCCTCACATTGCT----
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