>input_sequence_82307
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------------------------------------------------------------------ATGTTTTTAGGGCT
GTCAGCCTTCATTGGGCTCCTGCTGTTATCCCTTGGTGCAGGGCTCCTGCTGCCAGGAGGGGTGGGGCTCCGGGCCCTCC
CCTTGGCAGGTGAAGCACTCCTCCTAGGGCTGCGACTGTCACGGGGGCTCCTCATAGGGCTGCGACTGCCACGGGGGCTC
TTCATAGGGCTGCGACTGTTG------------------------------CGGGGGCTCCTCCTGGGGCTGAGACTGTC
ACGGGGGCTCCTCCTTGGGCTGCGACTGTCGCGAGGGCTCCTTGATCGCCTTTCATCCCTCCTTGGGGAAACAGAGCGGC
TAAGTAAAGCAAGAGACATACAGTCAGTGTTTCATACACAAAACATGATAGAAAAAAAAAGGAATTGA------------
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>chr3D_1_TraesCS3D01G134600
CCGTCTGCGCGCGCCCCGTCGTCGACCCGAGGCTGCCGAAGCCCATGTCGAACCTGGTGGAGTGGGGGCTGCACTGGCAG
GGCAGGGGCGAGCTGGAGAAGATCGTGGACCGGCGCATCGCGGCCGCGGCGAGGCCCGCGGCGCTGAGGAAGTACGGCGA
GACGGTGGCCAGGTGCCTGGCGGAGCGGGGCGCCGACCGGCCGGCCATGGAGGACGTGGTGTGGAACCTGCAGTTCGTGA
TGCGGCTGCAGGAGGGCGACGGCCTGGACTTCTCCGACGTGAGCAGCCTCAACATGGTGACAGAGCTCACGCCG---CCT
CGCCGTCAGAGAAGCGCGGTTGATCACGACGGGCTGGACTACTCCGACGTGAACAGCCTCAACATGGTTACAGAGCTCAC
GCCGCCTCAAACCGGCAGCGTGGAGGGAGACGGCGAAGC---CGATGATGATTTCACAGACGCATCCATGAGAGGGACCT
TCTGGCAGATGGTCAATGTCCGCAGCAGATGAACCCATATGGCCCTATATTAGAAGAT-ATGGTGTTTTTTGTACGTCCC
TGAGGAGAGTGGATGATGGAAAAGATTGTTTCCCCTCCATCTTTCGAA-GGACAAATACTACAAGCATTTTCGACCATG-
--TAGCACGATAAAGATGAGAAATTAAGCACA--AAAAGATTATTT-----------GAAACTGCAAAATGATTCCATGT
GCACATAGTACAACAGATATTATGGTCTGACTGGAGTATCAATACCGAAATAGAGTACACGATAAAATCAAACTCGTACA
GGCAAGTCTTT-GTTCAACATGTTTGGAGAGTTTCATAACCGTAGGAAGAATTTGATCGATCTCTCGACCCTCACCAGGT
GATGCAGTTCCACTGGGTGAAAGCTTGAAGGATTTCGATCCATCTCT-AACCACCACCGGGTGATGCACTTCCACTGGGT
GCACGGTGGTGGCCATTGTCTTCGCCGTCCCTGGGGCTCAGGCTACGACCATTGGCAGCTGGGCTCATGTTTTTAGGGCT
GTCAGCCTTCATTGGGCTCCTGCTGTTATCCCTTGGTGCAGGGCTCCTGCTGCCAGGAGGGGTGGGGCTCCGGGCCCTCC
CCTTGGCAGGTGAAGCACTCCTCCTAGGGCTGCGACTGTCACGGGGGCTCCTCATAGGGCTGCGACTGCCACGGGGGCTC
TTCATAGGGCTGCGACTGTTG------------------------------CGGGGGCTCCTCCTGGGGCTGAGACTGTC
ACGGGGGCTCCTCCTTGGGCTGCGACTGTCGCGAGGGCTCCTTGATCGCCTTTCATCCCTCCTTGGGGAAACAGAGCGGC
TAAGTAAAGCAAGAGACATACAGTCAGTGTTTCATACACAAAACATGATAGAAAAAAAAAGGAATTGAAACACAACACAA
GTATGTTTAAAAGCAATAATATCGACAAATCAACCAATTTTTTACACTGGCATATA------------------------
-----------------------------------------------------------------------TTCATTAGT
TGCAAACACAAGTATTTAATTCAATTAAAATTTACCACATTCAGCAGGTTAGTAAAATGTA-------------------
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-----------------TGAATTAAACCCATGCCCACAGAATAGCAGCAGATGAAACTAAACCCATGCATAACAGGAAAA
CAATATGCAAAAAAGGAAATACCATAATAATTGGACAAAATAGGACTTAAGAGGCTTTAGTTTGCAAGAAGAAAGAATGA
CAGTACTATGATCAGAACTCAAACTAAACAGACTACCAGAACAAGGGAATCATGCCACAGAATAAGAAGAAACGGTGCTC
AAATTTTCAA---AACATATACCTGTAGCTCCTACTGCGGCTCCTGCTGTAGCTCCTATCACGCACCCTTCCGCGGCGAG
GAGATGGAGATCTGGAGTAACTCTTTCCACGCCTGTGTTTTCATCAACAAAACTAAAGTCAGATATGCTCACTTATGTGT
AGAACAGAAAAGACAACC-CGCAGGGCATACTTGAGGTTCTTAGGGCTGTTCTGACAATCCCTTTCTATGTGGCCACTAT
CTCCACAACGATAGCACCTGTTTTTCCAGTCGCCAGCTTTGCAGTCCCGAGCCCAATGCCCATCAATCCCACAGTTAAAG
CAACGCCCAGAACCAGGAGGAGGTCCCCGACCCATATATTCACGGTCACCACCACGGCCACCACGGTCACGGTCACCTCC
TCCTCCTTGGCCACGCGGAACCTATAATGAGGATCATAATAAGGAAGGGCAAATAACAAAAGCACAAAACAACATAGAAA
AAATTATAGTGAGCAATATTA----TAATTACCCCTTTAGCAAACTCAACAATCATGCGGCTTCCATCAAAGTCACGACC
ATCAAGATTGTACCTTGCTTCATCAGCATCCCTGGGATCACTAAACTCCTGCAATAAGATTTATAGAAGGAAAGGAGGGG
CATCAAT
>chr3B_1
CCGTCTGCGCGCGCCCCGTCGTCGACCCGAGGCTGCCGAAGCCCATGTCGAACCTGGTGGAGTGGGGGCTGCACTGGCAG
GGCAGAGGCGAGCTGGAGAAGATCGTGGACCGGCGCATCGCCGCCGTGGCGAGGCCGGCGGCGCTGAGGAAATACGGCGA
GACGGTGGCCAGGTGCCTGGCGGAGCGCGGCGCCGACCGGCCGGCCATGGAAGACGTGGTGTGGAACCTGCAGTTCGTGA
TGCGGCTGCAGGAGGGCGACGGCCTGGACTTCTCCGACGTGAGCAGCCTCAACATGGTGACAGAGCTCACGCCG---CCT
CGCCGTCAGAGAAGCGCGGTCGATTGCGACGGCCTGGACTTCTCCGACGTGAGCAGCCTCAACATGGTTACAGAGCTCAC
GCCGCCTAAAACCGGCAGCATGGAAGGAGACGGTGTAGCCGACGATGACGATTTCACAGACGCATCCATGAGAGGGACCT
TTTGGCAGATGGTCAATGTCCGCAGCAGATGAACC-ACATAGCTTTGTATGAGAAGATGGTTGTGTTTTTTGTACGTCCG
TGAGGAAAGTGGATGCTGGAAAATATTGTTTTCCCTCCAGCTTTC-AA-GGACAAATACTACCAGCATTTACAACCAATG
TATAGCACGGTGAAGATGAGAAATTACTAAGCACAAAAGATTATTTGATGGAATGTAGAAACTGCAAAATGATTCCATGT
GCACATAGTACAACAGATATTATGGTCTGACTGGAGTGTCAATACCGAAATAGAGTACACGATAAAATCAAACTCGTACA
GGCAAGTCTTTTGTTCAACATGTTTGGAGAGTTTCATAACTGTAGGAAGAATATGATCCATCTCTCGACCCTCACCAGGT
GATGCTCTTCCACTGGGTGAACACTGGAAGGATTTTGATCCATAACTCAACCTCCACCAGGTGAGGCACTTCCACTGGGT
GCGCGGTGGTTGCCATTGTCTTCACCATCCCTGGGGCTCGGGCTACGACCATTTGCAGCTGGGCTCATGTTATTAGGGCT
GTCAGCCTTCATTGGGCTCCTGCTGTTTTCCCTTGGTGCAGGGCTCCTGCTGCCAGGAGGGGTGGGGCTCCGGGCCCTCC
CCTTGACAGGTGAAGCGCTCCTCCTAGGGCTGCGGCTGTCACGGGGGCTCCTCATAGGGCTGCGACTGCCACGGGGGCTC
TTCATA------------------------------GGGCTGCGACTGTCTCGGGGGCTCCTCCTTGGGCTGCGACTGTC
ACGGGGGCTCCTCCTTGGGCTGCGACTGTCACGGGGACTCCTTGATCGCCTTTCATCCCTCCTTGGGGAAACAGAGCGGC
TAAGTAAAGCAAGAGACATACAGTCAGTGTTCCATACACAAAACATGATAGAAAAAAAA-GGAATTGAACCACAACACGA
GTATGTTTAAAAGCAATATCAAG---AAATCAACCAATTTTTTACACTGGCATATA------------------------
-----------------------------------------------------------------------TTCATTAGT
TGCAAATACAAGTATTTAGTTCAATTAAAATTTACCACATTCAGCAGGTTAGTAAAATGTACTCCCTCCGTCCGGAAATA
CTTGTCGGAGGAATGAATGTATCTAGATGTATTTTAGTTCTAAGATACATCCATTTTTGTTCATTTCTCCGACGAGTATT
TTCGGACGGAGGGAGTATGAAGTAAACCTATGCCCACAGAATAGCAGCAGATGAAACTAAACCCATGCATAACAGGAAAA
CAATATGCAAAAAAGGAAATACCATAATAATTGGACAAAATAGGACTTAAGAGGCTTTAGTTTGCAAGAAAAAAGAATGA
CAGTACTATGATCAGAATTCAGACTAAACAGACTACCAGAACAAGGGAATCATGCCACAGAATAAGCAGAAACGGTGCCC
AAATTTTGAAAACAAAATATACCTGTAGCTCCTACTGCGGCTCCTGCTGTAGCTCCTATCACGCACCCTTCCGCGGCGAG
GAGATGGAGATCTGGAGTAACTCTTTCCACGCC--TGTTTTCATCAACACAACTAAAGTCAGATATGCTCTACTTAGAAC
GGAAAAAGAC-----AACTCGCGGGGCATACTTGAGGTTCTTAGGGCTGTTCTGGCAATCTCTTTCTATGTGGCCACTAT
CTCCACAACGATAGCACCTATTTTTCCAGTCGCCAGCTTTGCAGTCACGAGCCCAATGCCCATCAATCCCACAGTTAAAG
CAACGGCCAGAACCAGGAGGAGGTCCCCGACCCATATATTCACGGTCACCACCACGGCCA---CGGTCACGGTCACCTCC
TCCTCCTTGGCCACGCGGAACCTATAATGAAGATCATAATAAGGAAGGGCAAATAACAAAAGCATAAATCAACATAGAAA
AA-TTATAGTGAGAAATATTATAATTAATTACCCCTTTAGCAAACTCAACAATCATGCGGCTTCCATCAAAGTCACGACC
ATCAAGGTTGTACCTTGCTTCATCAGCATCCCTGGGATCACTAAACTCCTGCAATAAGATTTATAGAAGAAAAGGAGGGG
CATCAAT
>chr3A_1
CCGTCTGCGCGCGGCCCGTCGTCGACCCGAGGCTGCCGAAGCCCATGTCGAACCTGGTGGAGTGGGGGCTGCACTGGCAG
GGCAGGGGCGAGCTGGAGAAGATCGTGGATCGGCGCATCGCCGCCGCGGCGAGGCCGGCGGCGCTGAGGAAGTACGGCGA
GACGGTGGCCAGGTGCCTGGCGGAGCGCGGCGCCGACCGGCCGGCCATGGAGGACGTGGTGTGGAACCTGCAGTTCGTGA
TGCGGCTGCAGGAGGGTGACGGCCTGGACTTCTCCGACGTGAGCAGCCTCAACATGGTGACAGAGCTCACGCCGCCACCT
CGCCGTCAGAGAAGCGCAGTTGATAGCGACGGCCTGGCCCTCTCCGATGTGAGCAGCCTCAACATGGTTACAGAGCTCAC
GCCGCCACAAACCGGCAGCGTGGAGGGAGACGGCGTAGCCGAC---GACGATTTCACCGATGCATCCATGAGAGGGACCT
TCTGGCAGATGGTCAATGTCCGCAGCAGATGAACCCATATGGCCTTATATGAGAAGATGATGGTGTTTTTTGTACGTCCC
TGAGGAGAGTGGATGATGGAAAAGATTGTTTCCCCTACATCTTTC-AAAGGACAAATACTACACGCATTTTCGACCATG-
--TAGCACGATAAAGATGAGAAATTAAGCACA--AAAAGATTATTT-----------GAAACTGCAAAATGATTCCATGT
GCACATAGTACAACAGATATTATGGTCTGACTGGAGTATCAATACCGAAATAGAGTACACAATAAAATCAAACTCGTACA
GGCAAGTCTTT-GTTCAACATGTTTAGAGAGTTTCGTAGCAGTAGGAAGAATTTGATCCATCTCTCGACCCTCACCAGGT
GAA---CTTCAACTGGGTGAACACCGGAAGGATTTCGATCCATCTCTCAACCACCACCGGGTGATGCACTTCCACTGGGT
GCACGGTGGTTGCCATTGTCTTCGCCGTCCCTGGGGCTCGGGCTACGACCATTTGCAGCTGGGCTCATGTTATTAGGGCT
GTCAGCCTTCATTGGGCTCCTGCTGTTTTCCCTTGGTGCAGGGCTCCTGCTGCCAGGAGGGGTGGGGCTCCGGGCCCTCC
CCTTGGCAGGTGAAGCGCTCCTCCTAGGGCTGCGGCTGTCACGGGGGCTCCTCATAGGGCTGCGACTGCCACGGGGGCTC
TTCATAGGGCTGCGACTGTCGCGGGGGCTCCTCCTGGGGCTGCGACTGTCACGGGGGCTCCTCCTTGGGCTGCGACTGTC
ACGGGGGCTCCTCCTTGGGCTGCGACTGTCACGGGGGCTCCTTGATCGCCTTTCATCCCTCCTTGGGGAAACAGAGCGGC
TAAGTAAAGCAAGAGACATACAGTCAGTGTTTCATATACAAAACATGATAGGAAAAAAAAAGAATTAAAGCACAACACGA
GTATGTTTAAAAGCAATATCAAG---AAATCAACCAATTTTTTACATTGGCATATACTCCCTCCGCCCCGAAACAAGTGT
CTCAACTTTGTACTAACTCTAGTACAAAGTTGTACTAAGCTTGAGACACTTATTTTGGGATGGAGGGAGTGTTCATTAGT
AGCAAACACGAGTATTTAA-----TTAAAAATTACCACATT-AGCGGGTTAGTAAAAATGTATG----------------
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----------------ATGAAGTAAACCTATGCCCACAGAATAGCAGCAGATGGAACTAAACCCATGCATAACAGGAAAA
CAATATGCAAAAAATGAAATACCATGATAATTGGACAACAAAGGTCTTAAGAGCTTTAGTTTTGCAAGAAAAAAGAATAC
CAGTACTATGTTCAGAATTCAGACTCCACATACTACCAAAACAACGGAATCATGCCACAGAATAAGCAGAAACGGTGCCC
AAATTTTCAAAGCAACATATACCTGTAGCTCCTACTGCGGCTCCTGCTGTAGCTCCTATCACGCACCCTTCCACGGCGAG
GAGATGGAGATCTGGAGTAACTCTTTCCACGCC--TGTTTTCATCAACACAACTTAAGTCAGATATGCTCTACTTA---T
AAAACAGAAAAGACAAACTCGCAGGGCATACTTGAGGTTCTTAGGGCTGTTCTGGCAATCCCTTTCTATGTGGCCACTAT
CTCCACAACGATAGCACCTATTTTTCCAGTCGCCAGCTTTGCAGTCACGAGCCCAATGCCCATCAATCCCACAGTTAAAG
CAACGGCCAGAACCAGGAGGAGGTCCCCGACCCATATATTCACGGTCACCGCCACGGCCA---CGGTCACGGTCACCTCC
TCCTCCTTGGCCACGCGGAACCTATAATGAAGATCATAATAAGTAAGTGCAAATAACAAAAGCATAAATCAACATAGAAA
AAATTATAGTGAGCAATATT---------TACCCCTTTAGCAAACTCAACAATCATGCGGCTTCCATCAAAGTCACGACC
ATCAAGATTGTACCTTGCTTCATCAGCATCCCTGGGATCACTAAACTCCTGCAATAAGATTTATACAAGAGAAGGAGGGG
CATCAAT
>SNPs
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-----------------------------------------S--------------S-----------------------
---------------------------S----------------------------------------------------
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------------------------SS------S-------S-----------S---------------------------
-----------------------------------S------------S-------------------------------
--------------------------------------------S-----S-----------------------------
---------------------------------------------S----------------------------------
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----------------------------------------S-----------------S---------------------
-----SS--------------SS--S------------------------------------------------------
----------S----------------------------S-------------S-----------------S--------
---------------------------S----------------------------------------------------
----------------S-----------------S---------------------------------------------
-------------------S---------------------------------------------S------S-------
------------------------------S--S----------------------------------------------
---------------------------------------------------------------------S--------S-
------------------SS-SSSSS------------------------------------------------------
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---------------------S------S---------------------------------------------------
----------------------------------------------------------------------S---------
-----------------S---S--------------------------------------------S-----------S-
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---------------------------------SS--------------S--------------------SSS-SS-SS-
----------------S-------------------------------------S-------------------------
-------------------S--------------------------S---------------------------------
-----S------------------------------------------------------SSS-----------------
------------------------------S---------------------------------S---S-----------
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---------------------------------------------------------------------S----------
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>forward_902
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--TGCAGTTCCACTGGGTGAAA----------------------------------------------------------
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>reverse_2260
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-------------------GTTTTTCCAGTCGCCAGCTT-----------------------------------------
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