>input_sequence_82289
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---------------------------------------------------ATGCCGTCTGCGCGGCCGGCGGTCTTGCT
CGTCGCGGCCCTTTGTCTATGG------TGGTCGGCGACCGGCGCGCTGGCGGACGG---CGGCAACGGCACGGTGTGCC
TGTGCACGGGCCCGCAGTGCGTGCCGCCCTGCCCCGTCCCGGG---GACGCCGCCGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCCGCCGGCGGTCGGGCCCTTCCCCTGGGAGCAGCAGCCGCCGGCGTCGCCGAGGTCGGGGTCGGG
GTTCCCTCAGGACGCGGGCTTCCTCGCGGCAGCAGCGGCCAGCCCCGCTAGGAATCCGGCGGCGTGGCTGGCGGTGGCCG
CCTTGTGCTCTGCTTTCCTGCTGCTCCCGCACTAG---------------------------------------------
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>chr3A_1_TraesCS3A01G007500
GCCCTGCCACCACATATGTCCCGGTGGCTACGGGCGGAGCCGCCGCGGGCGCATACGATGGCGGTGGTAGTGAAGGATAG
ACGCAATCACCGGCCGCGGAGAGCTAGAGCTCCTCCTCCGAACCAGGTGTGTGAGATTAGTCATTATTATTTTGTG----
-------------ATGACCACTACTTGGATGTAGTGGCCACATAGAAACTACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTCTTTCATTCAACATTTTGTTCAAAATTTAATAATTTTAG
AAAATGTG--AAAATTTTGACAT------------------TACCATTTAGGGAAAGTTTTACCCCATTTAGACCAATGG
TTTGCTAGAGTATGGAAGTTTTAGTTAGCCCATACTATTTTTTA-TTCAAATTTTGACA-TTTTCAGTAAAATGTGAAAC
AATTCCTGTAAATATTACATGTATTCAATATTAATTTGGGAAAGTTACGGCTCAATTGGACCACATGTTTGGGAAGACAA
TGACAGTCTAATATGTTGGCTGTTGTGGCCGGTTTTTATTGCCATATGTGCACTTACAAGCAAGACCTATCTATCTGGAA
TTATATCAATGTGTCTAAACACTAGATTAGACCTATTTGCAAT-TATTACACCAATATGTGGTGTTCTTTGCAACAAACC
TGTATAGTAGGTGTTTTGTGCAACACTAGCCTCAATAAGTGGTGGTTTGTGCAATTCCCTCAGCTTAATTGGAAACCCGC
GTGACCCCGAACCCGTCGCTAATGGCGGTCGTCACCGCCGTTGTAATCCGGTCGCGTTGGTTTCACCGTAGCCATGGACG
CG---ACGTCACGTCTCTATCTCCCCGGCTACTTAACCAATCGGG-----------------ACGCCCGCCTCCAGCCGC
AGTCCACGAACCCATCG-------CTACAGCGGTGCGGCCTCGCCTCACCCACCC-----ACATC-ACCA--------CC
GCCGAAAAAGAAGATCCCGGAGAAGCG----------GCGACCGAGGAAGGATGCCGTCTGCGCGGCCGGCGGTCTTGCT
CGTCGCGGCCCTTTGTCTATGG------TGGTCGGCGACCGGCGCGCTGGCGGACGG---CGGCAACGGCACGGTGTGCC
TGTGCACGGGCCCGCAGTGCGTGCCGCCCTGCCCCGTCCCGGG---GACGCCGCCGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCCGCCGGCGGTCGGGCCCTTCCCCTGGGAGCAGCAGCCGCCGGCGTCGCCGAGGTCGGGGTCGGG
GTTCCCTCAGGACGCGGGCTTCCTCGCGGCAGCAGCGGCCAGCCCCGCTAGGAATCCGGCGGCGTGGCTGGCGGTGGCCG
CCTTGTGCTCTGCTTTCCTGCTGCTCCCGCACTAGTAACCCTCTA-------------TCTGGCTAGCTCATCCACCCCT
GTAGATTGACGGATGTTGTCTGAATACTGACGGCTGCTGTGCTGA-------------------TGTCTGAATCTATATG
AATGTA---ATTCTAGGTCTTGAGTTCAATTCTAAAGG--------------------CAATCTAAGAAGGGTTGGTTGG
GTTCCTCCTTTCTG--CATCCTGTTCTTGTTCCTCCC-TTGATTTGTTTGTTCATGGAGGCAATAACTTCTAAGTT----
TTCGTTGCAACTGGATGCTGGGGCTCTGCCAGATCTGATATA-----ATACAGCATAGAGTACTACCA-ATTTGGATCTG
TGTATGTATGATTGGTGCTTTATGAGATGTTGAGATG---CATGGTCTGGAACAT---GCACATATTCTTTCTTGAGAAT
ATTATTG---ACTCTTGGCGGCACTGTTGGACGCTGGTAC---CATCTTGTAGTGCTGTCAGACATGGCAATGGCCAAAC
AGTCTTTCAGAGCACAAGCC-------------------------------------------GCTCAACTTTGATTGGT
CCTTTTATCTGTGATAGACACTGCAGTCCTTGCAAAGTTCATCTCCGAAATGAGAAAAAAA-AATCCCGGCAAAAGAAAA
ATGGG------AAACTACGGAGCAAATCCATTATTCTCACAGCACTACATAGTCTA-----------CATTATCCATCAT
TCAGCTATAACTGAAAATTCATCTT----GTCTC-AGAAAAAACAAAGCAACTGAAGTC---GA-AAATCAATACTGAAC
CTACGGTTACTAGTAGTACCTGTGAATCAGATCGCACCACCGGTTCAGTTTCCCAACAAAAACAC------GAGTTAATG
CAGCTAGAAATGAATAGGAGCATTGCCAAATACCACCATCAAAGA-----------------AAGAAAGAAAGAAACCTC
TCCGTTTGG-CGGCATCACTGAAGCGACAAGGCCTCAACCAAAT-----CTCTCACCATCACCAATGAATTTACCAGCAG
AAGATGAAGCTGATTACTGTGGGGTTTTACACTTTGCAGTACTACTGCACAGTGCTCCTCTGTCAGAAAAACCAAAAGTA
CTAATTGAAAAAAC
>chr3A_1
GCCCTGCCACCGCGTAAGTCCCGGTGGCTGCGGGCGGAGCCGCCACGGGCGCATACAATGACGGTGGTAGTGAAGGATAG
ACGCAATCGCCGACCGCGGAGAGCTAGAGCTCCTCCTCCGAACCAGATGTATGAGACTAGTCATTATTATTTTGTG----
-------------ATGACCACTACTTGGATGTAGTGGCCACATAGAAACTACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTGTTTCATTCGAAGTTTTGTTCAAAATTTAATAATTTCAG
AAAATGTG--AAAAATTTGACGT------------------TACCATTTAAGGAAAGTTTTACCACATTTAGACCAATGG
TTTGCTAGAATATGGAAGTTTTAGTTAGCCCATACTATTTTTTA-TTCAAATTTTGACA-TTTTCAGTAAAATGTGAAAT
AATTCCTGTAAATATTACATGTATTCAATATTAATTTGGGAAAGTTACGGCTCAATTGGACCACATGTTTGGGAAGATAA
TGACAGTCTAATATGTTGGCTTTTGTGGCT-TTTTTTATTGCCACATGTGCACTTACAAGCGT-ACCTATCTGTCTGGAA
TTATATAAATGTGTCTAAACACTAGATTATACCTATTTGCAATGTATTATACCAATATGTGGTGTTTTTCGCAACAAACC
TGTATAGTAGGTGTTTTGTGCAACATTAGCCTTAATAAGTGATGGTTTGTGTAATTCCCTCA------------------
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>chr5A_1
GCCCTGCCACCACATATGTCCCGGTGGCTACGGGCGGAGCCGCCGCGGGCGCATACGATGGCGGTAGTAGTGAAGGATAG
ACGCAATCACCGGCCGCGGAGAGCTAGAGCTCCTCCTCCGAACCAGGTTTGTGAGATTAGTCATTATTATTTTGTG----
-------------ATGACCACTACTTGGATGTAGTGGCCACATAGAAACTACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTCTTTCATTCAACATTTTGTTCAAAATTTAATAATTTCAG
AAAATGTG--AAAATTTTGACAT------------------TACCATTTAGGGAAAGTTTTACCCCATTTAGACCAATGG
TTTGCTAGAGTGTGGAAGTTTTAGTTAGCCCATACTATTTTTTA-TTCAAATTTTGACA-TTTTCAGTAAAATGTGAAAC
AATTCCTGTAAATATTACATGTATTCAATATTAATTTGGGAAAGTTACGGCTCAATTGGACCACATGTTTGGGAAGACAA
TGACAGTCTAATATGTTGGCTGTTGTGGCCGGTTTTTATTGCCACATGTGCACTTACAAGGAAGACCTATCTATCTGGAA
TTATATCAATGTGTCTAAACACTAGATTAGACCTATTTGCAATGTATTACACCAATATGTGGTGTTCTTCGCAACAAACC
TGTATAGTAGGTGTTTTGTGCAACACTAGCCTCAATAAGTGGTGGTTTGTGCAATTCCCTC-------------------
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>chr1A_1
GCCCTGCCACCACATATGTCCCGGTGGCTACGGGCGGAGCCGCTGCGGGCGCATACGATGGCGGTGGTAGTGAAGGATAG
ACGCAATCACCGGCCGCGGAGAGCTAGAGCTCCTCCTCCGAACCAGGTGTGTGAGATTAGTCATTATTATTTTGTG----
-------------ATGACCACTACTTGGATGTAGTGGCCACATAGAAACTACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTCTTTCATTCAACATTTTGTTCAAAATTTAATAATTTCAG
AAAATGTG--AAAAATTTGACAT------------------TACCATTTAGGGAAAGTTTTACCCCATTTAGACCAATGG
TTTGCTAGAGTGTGGAAGTTTTAGTTAGCCCATACTATTTTTTA-TTCAAATTTTGACA-TTTTCAGTAAAATGTGAAAC
AATTCCTGTAAATATTACATGTATTCAATATTAATTCGGGAAAGTTACGGCTCAATTGGACCACATGTTTGGGAAGACAA
TGACAGTCTAATATGTTGGCTGATGTGGTCGGTTTTTATTGCCACATGTGCACTTACAAGCAAGACCTATCTATCTGGAA
TTATATCAATGTGTCTAAACACTAGATTAGACCTATTTGCAATGTATTACACTAATATGTGGTGTTCTTCGCAACAAATC
TGTACAGTAGGTGTTTTGTGCAACACTAGCCTCAATAAGTGGTGGTTTGTGCAATTCCCTC-------------------
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>chr7A_1
GCCCTGCCACCGTGTATGTCCCGGTGGCTGCGGGCGGAGCCGCCG-------ATACGATAGCGGTGGTAGTGAAGGATAG
ATGCAATCACCAGCCGCGGAGAGCTAGAGCCCCTCCTCCGAACCAGGTGTGTGAGACTAGTCATTTTTTTT-TGTG----
-------------ATGACCACTACTTGGATGTAGTGGCCACATAGAAACTACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAATTTGTTTCATTCAAAATTTTGTTCAAAATTTAATAATTTCAG
AAAATGTG--AAAAAATTGACGT------------------TACCATTTAGGGAAAGTTTTATCCCATTTAGACTAGTGG
TTTGCTAGAATGTGGAAGTTTTAGTTAGCCCATACTATTTTTTA-TTCAAATTTTGACA-TTTTCAGTAAAATGTGAAAC
AATTTCTGTAAATATTACATGTATTCAATATTAATTTGAGAAAGTTACGGCTCAATTGGGCCACATGTTTGGGAAGATAA
TGACAGTCTAATATGTTGGTTGTTGTGGCCGTTTTTTATTGCCACATGTGCACTTACAAGTGGGACCTATCTGTCTGAAA
TCATATCAATGTGTCTAAACACTATATTAGACCTATTTGCAATGTATTACACCAATATGTGGTATTCTTCGCAACAAACC
TGTATAGTAAGTGTTTTGTGCAACACTAGCCTCAATAAGTGATGGTTTGTGCAATTCCC---------------------
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>chr5A_56
-------------------------------------------------------CGATGGCGGCGGCAGTGGCGGGTAG
ATGCAATTGCCGGCCACAGAGAGCTGGAGCGCCTCCTCCAGACCAAGTATGCAAGACAAGTCATATTATTT-TGTGATGG
TTGTATTGGCCACATGACAACTAGTTTGCTGTAGTGGCCATATAGCAAATACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTGTTTCATTTAAATTTTGGTTCAAATTTTAACAATTTCAG
AAAATATG--AAAAATTCCAGTGAATTTCACATGTCTACAGTACCATTCTGGGAAAGTTTTACCCCATTTGGATCAATGG
GTTGA-AGATAATGAAAGTTTTGGTTAGCCCGTACAATTTTTTGGTTCAATTTTTGACATTTTTCAGAAAAATGAGAAAC
AATTCTAGTAAAATCTACATGTATTCAATACTAATTTGAGAAAGTTTCGGCTCAATTGGACCACAAGTTTGGGA-GATAA
TGACGATCTAATATGTTGGCTGATGTGACCGGTTTTTATTGCCACATGTGCACTTACAAGTGGGACCCATCTGTATAAAA
TTATGTCAATGTATCCAAACACTAGATTAGATCTAGTTGCAATGTATTACACCAATATGTGATGTTTTTTGCAATAAACC
CGTATAGTAGGTGTTCTGTGCAACACTAGCCCCAATAAGTGGTGGATTATGCAATTCCCTC-------------------
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>chr7A_56
-------------------------------------------------------CGATGGCGGCGGCAGTGGCGGGTAG
ATGCAATTGCCGGCCACAGAGAGCTGGAGCGCCTCCTCCAGACCAAGTATGCAAGACTAGTCATATTATTT-TGTGATGG
TTGTATTGGCCACATGACAACTAGTTTGCTGTAGTGGCCATATAGCAAATACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTGTTTCATTTAAATTTTGGTTCAAATTTTAACAATTTCAG
AAAATATG--AAAAATTCCAGTGAATTTCACATGTCTACAGTACCATTCTGGGAAAGTTTTACCCCATTTGGATCAATGG
GTTGA-AGATAATGAAAGTTTTGGTTAGCCCGTACAATTTTTTGGTTCAATTTTTGACATTTTTCAGAAAAATGAGAAAC
AATTCCAGTAAATATTACATGTATTCAATACTAATTTGAGAAAGTTT-GGCTCAATTGGACCACAAGTTTGGAA-GATAA
TGGTGATCTAATATGTTGGCTGATGTGACTGGTTTTTATTGTCACATGTGCACTTACAAGTGGGACCCATCTGTATAAAA
TTATGTCAATGTATCCAAACACTAGATTAGATCTAGTTGCAATGTATTACACCAATATGTGGTGTTTTCTGCAACAAACC
CGTATAGTAGGTGTTCTGTGCAACACTAGCCCCAATAAGTGGTGGATTATGCAATTCCCTC-------------------
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>chr2A_56
-------------------------------------------------------CGATGGTGGCGGCAGTGGCGGGTAG
ATGCAATTGCCGGCCACAGAGAGCTGGAGCGCCTCCTCCAGACCAAGTATGCAAGACTAGTCATATTATTT-TGTGATGG
TTGTATTGGCCACATGACAACTAGTTTGCTGTAGTGGCCATATAGCAAATACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTGTTTCATTTAAATTTTGGTTCAAATTTTAACAATTTCAG
AAAATATG--AAAAATTCCAGTGAATTTCACATGTCTACAGTACCATTCTGGGAAAGTTTTACCCCATTTGGATCAATGA
GTTGA-AGATAATGAAAGTTTTGGTTAGCCCGTACAATTTTTTGGTTCAATTTTTGACATTTTTCAGAAAAATGAGAAAC
AATTCCAGTAAATACTACATGTATTCAATACTAATTTGAGAAAGTTTCGGCTCAATTGGACCACAAGTTTGGGA-GATAA
TGGCGATCTAATATGTTGGCTGATGTGACCGGTTTTTATTGCCACATGTGCACTTACAAGTGGGACCCATCTGTATAAAA
TTATGTCAATGTATCCAAACACTAGATTAGATCTAGTTGCAATGTATTACACCAATATGTGGTGTTTTCTGCAACAAATC
CGTATAGTAGGTGTTCTGTGCAACACTAGCCCCAATAAGTGGTGGATTATGCAATTCCCTCA------------------
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>chr3A_157
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-------------ATGACAACTAGTTTGCTGTAGTGGCCATATAGCAAATACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTGTTTCATTTAAATTTTGGTTCAAATTTTAACAATTTCAG
AAAATATG--AAAAATTCCAGTGAATTTCACATGTCTACAGTACCATTCTGGAAAAGTTTTACCCCATTTGGATCAATGG
GTTGA-AGATAATGAAAGTTTTGGTTAGCCCGTACAATTTTTTGGTTCAATTTTTGACATTTTTCAGAAAAATGAGAAAC
AATTCCAGTAAATACTACATGTATTCAATACTAATTTGAGAAAGTTTCGGCTCAATTGAACCACAAGTTTGGGA-GATAA
TGACGATCTAATATGTTGGCTGATGTGACCGGTTTTTATTGCCACATGTGCACTTACAAGTGGGACGCATCTGTATAAAA
TTATGTCAATGTATCCAAACACTAGATTAGATCTAGTTGCAATGTATTACACCAATATGTGGTGTTTTCTGCAACAAACC
CGTATAGTAGGTGTTCTGTGCAACACTAGCCCCAATAAGTGGTGGATTATGCAATTCCCTCTGCTT--------------
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>chr3A_157
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-------------ATGACAACTAGTTTGCTGTAGTGGCCATATAGCAAATACTTGGATGCTAAAATCTAATGGCAACAAT
ATCTACCATGTTTTTGGTGCTAGTGATCACATGCCGAACTTGTTTCATTTAAATTTTGGTTCAAATTTTAACAATTTCAG
AAAATATG--AAAAATTCCAGTGAATTTCACATGTCTACAGTACCATTCTGGGAAAGTTTTACCCCATTTGGATCAATGG
GTTGA-AGATAATGAAAGCTTTGGTTAGCCCGTACAATTTTTTGGTTCAATTTTTGACATTTTTCAGAAAAATGAGAAAC
AATTCCAGTAAATACTACATGTATTCAATACTATTTTGAGAAAGTTTCGGCTCAATTGAACCACAAGTTTGGGA-GATAA
TGACGATCTAATATGTTGGCTGATGTGACCGGTTTTTATTGCCACATGTGCACTTACAAGTGGGACCCATCTGTATAAAA
TTATGTCAATGTATCCAAACGCTAGATTAGATCTAGTTGCAATGTATTACACCAATATGTGGTGTTTTCTGCAACAAACC
CGTATAGTAGGTGTTCTGTGCAACACTAGCCCCAATAAGTGGTGGATTATGCAATTCCCTC-------------------
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>chr3A_163
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-------------------ACTACTTTGCTGTAATGGTCATATGTCAACTACTTGGATGCTAA-----AATGGGAACAAT
ATCTACCATA-TTTTTGTGTTGGTGGTCTCATGCCGAACTTGCTTCATTTAGATGTGGGTTCAAAATTTAACAATTCTAG
AGAAGTGTGAAAAAATTATAGTAATTTACACATGTGTAAAGTACCATTCTGAAAAAGTTTTACCCCATTTGGATTAATGG
TTTGCTACATAATGGAAGTTTTAGTTAGCCCATTCAATTTTTTTGTTAAAAATTTGGCA-TTTTCAGAAAAATGTGAAAT
AATTCCAGTAAATACTGCATGTATTCAATAGTAATCTAGGAAAGTTTTGGCTCAATTGGACCACAGGTTTTGGA-GATAA
TGACAGTCCAATATGTTG-CTGATGTGGCCGGTTTTTATTGCCACGCGTGCACTTACAAGCGGGGCCCATTTGTCTGTAA
TTATGTTAATGTGTTCAAACACCAGATTAGACCTATTTGCAATGTATTACACCAATAGGTGGTATTTTTTGCAACAAACC
CGTATAGTAGGTGTTTTGCGCAACGCTAGCCCCAATAAGTGGTGGTTTGTGCAATTCCCTCA------------------
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>chr7B_163
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-------------------ACTACTTTGCTGTAATGGTCATATGTCAACTACTTGGATGCTAAAATCTAATGGGAACAAT
ATCTACCATA-TTTTTGTGTTGGTGGTCTCATGCCGAACTTGCTTCATTTAGATGTGGGTTTAAAATTTAACAATTCTAG
AGAAGTGTGAAAAAATTATAGTAATTTACACATGTGTAAAGTACCATTCTGAAAAAGTTTTACCCCATTTGGATTAATGG
TTTGCTACATAATGGAAGTTTTAGTTAGCCCATTCAATTTTTTTGTTAAAAATTTGGCA-TTTTCAGAAAAATGTGAAAT
AATTCCAGTAAATACTGCATGTATTCAATAGTAATCTGGGAAAGTTTTGGCTCAATTGGACCACAGGTTTTGGA-GATAA
TGACAGTCCAATATGTTG-CTGATGTGGCCGGTTTTTATTGCCACGCGTGCACTTACAAGCGGGGCCCATTTGTCTGTAA
TTATGTTAATGTGTTCAAACACCAGATTAGACCTATTTGCAATGTATTACACCAATAGGTGGTGTTTTTTGCAACAAACC
CGTATAGTAGGTGTTTTGCGCAACGCTAGCCCCAATAAGTGGTGGTTTGTGCAATTCCCTC-------------------
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>chr1B_163
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-------------------ACTACTTTGCTGTAATGGTCATATGTCAACTACTTGGATGCTAAAATCTAATGGAAACAAT
ATCTACCATA-TTTTTGTGTTGGTGGTCTCATGCCGAACTTGCTTCATTTAGATGTGGGTTCAAAATTTAACAATTCTAG
AGAAGTGTGAAAAAATTATAGTAATTTACACATGTGTAAAGTACCATTCTGAAAAAGTTTTACCCCATTTGGATTAATGG
TTTGCTACATAATGGAAGTTTTAGTTAGCCCATTCAATTTTTTTGTTAAAAATTTGGCA-TTTTCAGAAAAATATGAAAT
AATTTCAGTAAATACTGCATGTATTCAATAGTAATCTAGGAAAGTTTTGGCTCAATTGGACCACATGTTTTGGA-GATAA
TGACAGTCCAATATGTTG-CTGATGTGGCCGGTTTTTATTGCCACGCGTGCACTTACAAGCGGGGCCCATTTGTCTGTAA
TTATGTTAATGTGTTCAAACACCAGATTAGACCTATTTGCAATGTATTACACCAATAGGTGGTGTTTTTCGCAACAAACC
CGTATAGTAGGTGTTTTGCGCAACGCTAGCCCCAATAAGTGGTGGTTTGTGCAATTCCCTC-------------------
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>chr3A_190
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----------------------------------------------AACTACTTGGATGCTAAAATCTAATGGGAACAAT
ATCTGCCATA-TTTTTGTGTTGGTGGTCTCATGCCGAACTTGCTTCATTTAGATGTGGGTTCAAAATTTAACAATTCTAG
AGAAGTGTGAAAAAATTATAGTAATTTACACATGTGTAAAGTACCATTCTGAAAAAGTTTTACCCCATTTGGATTAATGG
TTTGCTACATAATGGAAGTTTTAGTTAGCCCATTCAATTTTTTTGTTAAAAATTTGGCA-TTTTCAGAAAAATGTGAAAT
AATTGCAGTAAATACTGCATGTATTCAATAGTAATCTGGGAAAATTTTGGCTCAATTGGACCACAGGTTTTGGA-GATAA
TGACAGTCCAATATGTTG-CTGATGTGGCCGGTTTTTATTGCCACACGTGCACTTACAAGCGGGGCCCATTTGTCTGTAA
TTATGTTAATGTGTTCAAACACCAGATTAGACCTATTTGCAATGTATTACACCAATAGGTGGTG-TTTTCGCAACAAACC
CGTATAGTAGGTGTTTTGCGCAACGCTAGCCCCAATAAGTGGTGGTTTGTGCAATTCCCTCGCTTA--------------
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>chr3B_742
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-------------------------------------------------------------AGCTTAATTGGAAACTCCA
ATCACCCCAAACCCGTAGCTAATGGCGGGCGTCACCGCC---GTAATCCGGTCGCGGTGGTTTCACCGTGGCCATGGACG
CG---ACGTCACGTCCCTATCTCCCCCGCTACTTAACCAATCGGGCGTGCCGGGGTAGGGACACGCCCGCCTCCACCCGC
ACCAC----GCTCATCGCTACAGCCTACAGCGGCGCGGCCTCGCCTCACCCACCC-----ACCTC-AGCGGCGCCCGCCC
GCCGAAAAGGAAGATTCCGAGGAAGAAGCGGCG---AGCGATCGGCTGAAGATGCGGTCTCCGCGGCCGGCGGTCCTGCT
CTCCGCGGCCGCGTGGCTGTGGATGCTCCTGTCGGCGGCCGGCGCGCTGGCGGACGGCAACGGCAACGGGACGGTGTGCC
TGTGCACGGGCCCGCAGTGCGTGCCGCCGTGCCCAGTCACGGG---GACGCCGCCGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCCGCCGGCGGTCGGACCCTTCCCGTGGGAGCAGCAGCCGCCGGCGTCCCCGAGGTCGGGGTCGGG
GTTCCCTCAGGACGCGGGGTTCCTCGCGGCGGCAGCGGCGAGCCCCACTAGCCCGGCGGCGACGCGGCTGGCGGTGGCCG
CCTTGTGCTCTGCTTTCCTGCTGCTCCTGCACTAGTGACCCTCCCTCTCTCTAGTCTCTATGGCTCGCCCACCCAGCCCT
GTAGATTGATGGATGTAC-TA--GCTGCGAGTTCATCAGG------------------AGGCGCTGTCTGAATCTATATG
TATGTA---ATTCTAGGTCTTGATTTCAATTCAGTAGGCTAAT------ATGAAGGAACAATCTGAGAAGGATTGGTTGG
GATCCACCTTTCTG--CATCCTGTTCTTGTTGCTCTGATTGATTTGTTCACTCATGGAGGCCATAACTTTTAACTT----
TTCGTTGCAACTGAATTCTGGGGCTCTGCAAGATCTGATAAT-----AATAGAGATAGAGTACTGCCA-TTTGGGTCTG-
----TGTATGATTGGTGCTTTATGAGATGTTGAGATGATGCATGGTCTGGAACATGCAGCATATATTCTTTCTTGAGAAT
ATTATTATCAAGTCTTGGCAGCACTGTTGGACACTAGTACTATCATCTTGTACTACTGTCACACATGGCAATGACCAAAC
AGTCTTTCAGAGCACAAGCCCATGCTTGGTCAGTTCTTGGGGTGTAGGTGCCCGAT------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TCAT
TCATTCATAACTGAAAAGTAATCTGGAGGGTCTTAACAAAAACAAAAGTAACTGAAGAACAAGA-AAATCAATACTGAAC
CCACGGTTACTAGCAGCACCTGTGAATCAGATCGCACCACCGGTTCAGTTTCTGAAGAAACACGAATGAATGAATTAATG
CAGCTCGAAATGAATAGGAGCATTGCCGAACACCACCATCAAAGCAAATTAGTTGCCCCATCAAGA----AAGAAACCTT
TCCGTTCG---------------GCGTCAAGGCCTCAACCAATCCAATCCTCTCACCATCACCAACGAATAAACCAGAAG
AAGATGAAGCCGATTACTGTGGGGGTTTACACTCAGTACTATGC------------------------------------
--------------
>chr3D_742
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-------------------------------------------------------------AGCTTAATTGGAAACCCGC
ATCACCCCAAACCCGTCGCTAATGGCGATCGTCACCGCC---GTAATCCGGTCGCGGTGGTTTCACCGTAGCCATGGACG
GGAGTACGTCACGTCCCTATCTCCACCGCTACTTAACCAATCGGTCATGCCGGGGTAGGGAC--GCCCGCCTCCAGCCGC
AGCAC----ACTCATCG-------CTACAGCGGTGCGGCCTCGCCCCACCCACCC-----ACCTCCACCA--------CC
GCCGAAAAAGAAGATCCAGAGGAAGCGGCGGCCGGCAGCGATCGACTGAGGATGCCGTCTCCGGGGCCGGCGGCCCTGCT
CGTCGCGGCCGTGTTCCTGTGG------TGGTCGGCGGCCGGCGCGCTGGCGGACGG---CGGCAACGGCACGGTGTGCC
TGTGCACGGGCCCGCAGTGCGTGCCGCCGTGCCCCGTCCCGGG------------GACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCCAGCGGCGGTCGGGCCCTTCCCCTGGGAGCAGCAGCCGCCGGCGGCGCCGAGGTCGGGGTCGGG
GTTCCCTCAGGACGCGGGGTTCCTCGCGGCGGCGGCCTCGTGCCCCGGTAGCA---CGGCGACGCGGCTGGCGGTGGCCG
CCGCGTGCTCTGCTCTCTTGCTCCTCCTGCACTAGTGACCCTCTG-----------TCTCTGGCTCGCTCGTCCACTCCT
GTAGATTGATGGATGGATGTA--GGTGCGAGCTCATCAGGGATGTCCAAATCTATATGATATACTCTACT------TATG
TATGTA---ATTCTAGGTCTTGGTTTCAATTCAGTAGGATAAT------ATGAACGAACAATCTAAGAAGGATTGGTTGG
GTTCCACCTTTCTG--CATCATGTTCTTGTTGCTCTGATTGATTAGTTCGTTCATGGAGGCCATAACTTCACCTTTT---
-----------------------CGCTGTCAGACCTGATAAT-----ACACATGGAGTT------CCA-TTCGGATCTC-
----TCTATGATTGGTGCTTTATCAGATGTCCA---GATGCATGGTCTGGAACAT---GCATATGTTCTGA----AGAA-
--TATTATTAACTCTTGGCAGCACTGTTGGACACTCTCAT----ATCTTGTAGTGCTGTCAGACATGGCAATGGCCAAAC
AGTCTTTCAGCGCACAAGCC------------------------------------------------------------
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>chr3B_806
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---------------------------------------------ATCCGGTCGCCGTGGTTTCACCGTAGCCATGGATG
GGA---CGTCACGTCTCTATCTCCCCCGCTACTTAACCAATCCGGCGTGCCGGGGTAGGGACACGCCCGCCTCCAGCCGC
AGTCCACTAACTCATCG-------CTACAGCGGCGCGGCCTCGCCTCACCCGCCCCACCCACCTC-AGCGGCGC----CC
ACCGAAAAACAAGATTCCCAAGAAGAAGCGGCG---ACCGATCGGCTGAAGATGCCGTGTCCGCGGCCGGCGGTCCTGCT
CTCCGCGGCCGCGTGGCTGTGGCTGTTCCTGTCGGCCGCCGGCGCGCTGGCGGACGG---CGGCAACGGCACGGTGTGCC
TGTGCACGGGCCCGCGGTGCGTGCCGCCCTGCCCCGTCCCTGGGACGACGCCGCCGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCCGCCGGCGGTGGGGCCCTTCCCGTGGGAGCAGCAGCCGCCGGCGTCGCCGAGGTCGGGGTCGGG
GTTCCCCCAGGACGCGGGCTTCCTCGCGGCAGCTGCGGCGAGCCCCACTAGGAATCCGGCGGCGTGGCTGGCGGTGGCCG
CCGTGTGCTCTGCTTTGCTGCTGCTCCTGCAGCAGTGACCCTCT-------------------CTGGCTCGCCCCCTCCT
GTAGATCAGTAGATTGAGTTCAGGCTGCAGGGTGGTCAGA------------------AGATGCTGAACT------TATA
AAAATATGTAATCTAGGTCTTCAATTCAGTTCATATATGTAGGCCATGGA----CGAACAATCTGAAAT-------TCGG
GTTCATCCTTCCTTTTCATCCTGTTCTTGTGAGAATTAGCAACT------------------------------TT----
TTCATTGCAACTGAAATTC-------------------------------------------------------------
------------TGGGGCTTTACGAGATGTTGAGATGATGCATGGTCTGGAACAT---GCATATATTCTTTCTTGAGAAT
ATTATTATTAACTCTTGGCAGCACTGTTGGACACTAGTACTATCATCTTGTAGCACTGTCAGACATGTCAATGGCCAAAC
AGTCTTTCAGAGCACAAGCC------------------------------------------------------------
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>chr7A_987
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-------------------------------------GCGATCGAGGAAGGATGCCGTCTGCGGGGCCGGCGGTCCTGCT
GGTCGCGGCCGTGTGGGTGCTC------CTGTCAGCCGGCCGTGCTGGCTG--------ACGGCAACGGCACGGCGTGCC
TGTGCACGGGCACGCGGTGTGTGCCGCCCTGCCCTGTCCCGGGGACGCCGCTACTGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCTGCAGGCGACCGGGCCCTTCCCGTGGGAGCAGCAGCCGGCGGCGGCGACGAGGACGGGGT----
--TCCCTCAGGACACAGGGTTCCTTGCGGCGGCAGTGGCGAGCCCGGCAGGACGACAGCTG-------TGACGGTGGCCT
CCGTGTGCTCTACTTTCTTGCTGCTC--------------------------------------------GCCCACCTCT
ATAGACCAGTAGATTCAGGTCAGGCTGCAGGGTGGTCAGA------------------AGATGCTCAACT------TATA
TA-----------TAGGCCTTCGATTCAGTTCATATATGTAGGCCATGGATGGATGAACAATCTAAAAT-------TTTG
GTTCCTCCTCCTTTTTCA--CTCTTCTTGTGAGAAT-GGCAAGT------------------------------TTTTGA
TTCATTGCAACTGAATGCTGGGGCACTGCCAGATCTGATATACTAACACACATGGAGTATTAGTACCA-TTTGGATCTG-
----TGTATGATTGATGCTTTATGAGATGTTGA---GATGCATGGTCTCGAACGT---GCATATATTCTTTCTTGA----
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>chr6A_987
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-------------------------------------GCGATCGAGGAAGGATGCCATCTGCGGCGCCGGCGGTCCTGCT
GGTTGCGGCCGTGTGGGTGCTC------CTGTCGGCCGGCCGTGCTGGCTG--------ACGGCAACGGCACGACGTGCC
TGTGCATGGGCACGCGGTGTGTGCCGCCCTGCCCTGTCCCGGGGACGCCGCTACCGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGCAGCGGCTGCAGGCGACCGGGCCCTTCCCGTGGGAGCAGCAGCCGCCGGCGGCGACGAGGACGGGGT----
--TCCCTCAGGACACAGGGTTCCTTGCGGCGGCAGTGGCGAGCCCGGTAGGACGACGGCTG-------TGACGGTGGCCG
CCGCTTGCTCTGCTTTCTTGCTGCTC--------------------------------------------GCCCACCTCT
ATAGACCAGTAGATTCAGGTCAGGCTGCAGGGTGGTCAGA------------------AGATGCTCAACT------TATA
TA-----------TAGGCCTTCGATTCAGTTCATATATGTAGGCCATGGATGGGTGAACAATCTAAAAA-------TTTG
GTTCCTCCTCCTTTTTCA--CTCTTCTTGTGAGAATTGGCAAGT------------------------------TTTTGA
TTCATTGCAACTGAATGCTGGGGCACTGCCAGATCTGATATACTAACACACATGGAGTATTAGTACCA-TTTGGATCTG-
----TGTATGATTGGTGCTTTATGAGATGTTGA---GATGCATGGTCTCGAACGT---GCATATATTCTTTCTTGA----
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--------------
>chr4A_987
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-------------------------------------GCGATCGAGGAAGGATGCCGTTTGCGCGGCCGGCGGTCCTGCT
GGTCACGGCCGTGTGGGTCCTC------CTGTCGGCCGACCGTGCTGGCTG--------ACGGCAACGGCATGGCGTGCC
TGTACACGGGCACGCGGTGTGTGCCGCCCTGCCCTGTCCCGAGGACGCCGCTACCGACGACGTCGCCCACGCAGTTCCCC
TTCTGCCCGTAGCGGCTGCAGGCGACCGGGCCCTTCCCCTGGGAGCAGCAGCCGCCGGCGGCGACGAGGACGGGGT----
--TCCCTCAGGACACAGGGTTCCTTATGGCGGCAGTGGCGAGC-------------GGCTG-------TGACGGTGGCCG
CCGCGTGCTCTGCTTTCTTGCTGCTC--------------------------------------------GCCCACCTCT
ATAGACTAGTAGATTCAGGTCAGGCTGCAGGGTGGTCAGA------------------AGATGCTCAACT------TATA
TA-----------TAGGCCTTCGATTCAGTTCATATATGTAGGCCATGGATGGATGAACAATCTAAAAA-------TTTG
GTTCCTCCTCCTTTTTCA--CTCTTCTTGTGAGAATTGGCAAGT------------------------------TTTTGA
TTCATTGCAACTGAATGCTGGGGCACTGCCAGATTTGATATACTAACACACATGGAGTATTAGTACCA-TTTGGATCTG-
----TGTATGATTGGTGCTTTATGAGATGTTGA---GATGCATGGTCTCGAACGT---GCATATATTCTTTCTT------
--------------------------------------------------------------------------------
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--------------
>chr5B_1594
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------TT----
TTCATTGCAACTGAATGTTGGGGCTCTGCCAGATCTGATAC------AATAAAGATAGAGTACTGCCATTTTGGATATG-
----TGTATGATTGGTGCTTTATAAGATGTTGA---GATGCATGGTCTGGAACAT---GCATATATTCTTTCTTGAGAA-
--TATTATTAACTCTTGGCAGCACTGTTGGACACTACTACTATCATCTTGTACTACTGTCACACATGTCAATGACCAAAC
AGTCTTTCAGAGCACAAGCCCATGCTTCGTCAATTCCTGGGGTAAGCAAAGGGATCAATCGCCGCTCAACTTCGATTGGT
CCTTATATCTGTGATAAACATTGCAGCCCTTGCAAAGTTCATCTCAGAAATGAGAAAAAAGGAACCACGCCAAAAGAAAA
ATAGTAGTAGAAAACTACGGAGCAAATCCATTATTCTCACATCACTGCTTCATACTAGTACAGTGCGCATTACTCATCAT
TCAGTTGTAACTGGAAAATCATCTTGAGGGTCTC-AGAAAACACAGAGTAACTAAAGAAGAAAACAAATCAATACTGATC
CTACGATTACTAGTAGCACCTGTGAATCAGATCGCACTACTGGTTAAGTTTCTGAAGAAACA----TGAATGAATTAATG
CATCTACAAATGAATAGGAGCATTGCCAAATACCACCATCAACGCAAATTAGGTGCCACATCAAGAAAGTAAGAAACCTT
TCCGTTTGGCCGGCATCACTGAAGCGTCAAGGCCTCAACCAAAT-----CTGTCGCCATCACCAAGGAATTAACTAGCAA
AAGATGAAG-----------------------------------------------------------------------
--------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-S-----S------------------------------SSS--------------S-----------------------
--------------------------S-----------------------------------------------------
-------S---S--------------------------------------------------S-----------------
-------------------S---------------------S---------------------------------S----
----------S-S--S--S------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
---------------------------S--------S-------S--------------------S--------------
---------S------S--SSSSSSSSS--S-S-SS-S-S-S--S-----------------------------------
-----------------------S--------SS-------------------------------------S--------
-------------------------------S---SS-----------S------------S-----------S------
-------------S----------------------------------S---SS---------------S--S--SSSSS
SSSS---------------------------------------------------------S------------------
------S------------S------------S--S--------------------------------------------
------------------------------------------------------------------------S-------
----S-----------S---S-----S------------------S--------------S---S-S--S----------
--S-S------------------------------------S----S-S-SS-SSS----------------SS------
----S------------S------------------------------S--------SS---------------------
----------------S-----------------------------------SS--S---S--SS--------S------
--------------------------------------------S------------------------S---------S
--------------------------S--------------------------------------S-----S--------
----------S-------------S--------SS-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_1060
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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GCCGAAAAAGAAGATCCCGG------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------
>reverse_2607
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------GCACAGTGCTCCTCTGTCAG--------------
--------------
