>input_sequence_82284
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-----------------------------------------------ATGGTGTTCAGCGGCGCGTGGCTGGCGGCGGCG
GCGCGGGTGCCGGCGGAGCTGTGCCAGGGGCCGCCGCGGCCGGGGCAGCGGCGGCGGCTGCGGGCCGACGAGGTGCTGCG
CGCGCTGCTCACGCCGCCCGCGCGGGAGCTGGAGCGCCTGGCCGAGTGCCTCTACGTCTTCTTCTGCCTGCCGCTGCCGG
AGCCGGACCAGTACTACGTGCCGGCGTCCGGGCGCGGCGGCTGGATGGCGCGCCGGCCGCCCGGCGCCGTGCTGTACAGC
TACCGGAGGTCCCTCTCGCTCTCCTCCGACGGCGGCTCGTCGTCGTCCACGTGGATGGGCGGCTCCGACGAGGAGGGGCT
GT---ACTACTCGGACGACTAG----------------------------------------------------------
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>chr2D_1_TraesCS2D01G203400
TCCTACATCTTGTCATGCCAGGACAATAAAGGCCATACAATTCACCTTTCCCGCATCACAAGAAAAAGAAAGAAAGATGA
TACAATTCAGCAGGCCACGGAATACGATGGGTGGTCGCA---------TGGATCCGCACACGGGTTGCACAGACCCTGGA
ATGGTAAACTGATCTGCAGCTAACTC-TAACTCGTGACATTG-------------------------------GAGCGGG
CCACGACGTGTGGTTTCC-TACCGGGTCAATCCTTCCCCGTCTCCGT----------------TGAACCATCCAAGACGG
CTACGGCACTTGGTCACCGCATTCTCCATCGTACGAAGAGACGACCGACCGGAGACACCGGACCATACACCGTCTCCGGA
CCCGGCGCACGCGTTCTGTACACCTTTGCTTGCACCCGTGCGGGTGCGACACAAACCACAACCAT-------TCAAAACA
CAGCCCCGGAACGCGGAAAAACCAACGAAACCTCCTCGGAGCAGGCCGCGCGCCCGCCGGCGGAAGCGACGAGTCGACGA
CGACCGCGCCGGCACGTACTCACAACAAACCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------
CAGCGAGGGACGCGAGGCAGCAGCAGTAGCAGCAGAGGGGA---CGGATGGTGTTCAGCGGCGCGTGGCTGGCGGCGGCG
GCGCGGGTGCCGGCGGAGCTGTGCCAGGGGCCGCCGCGGCCGGGGCAGCGGCGGCGGCTGCGGGCCGACGAGGTGCTGCG
CGCGCTGCTCACGCCGCCCGCGCGGGAGCTGGAGCGCCTGGCCGAGTGCCTCTACGTCTTCTTCTGCCTGCCGCTGCCGG
AGCCGGACCAGTACTACGTGCCGGCGTCCGGGCGCGGCGGCTGGATGGCGCGCCGGCCGCCCGGCGCCGTGCTGTACAGC
TACCGGAGGTCCCTCTCGCTCTCCTCCGACGGCGGCTCGTCGTCGTCCACGTGGATGGGCGGCTCCGACGAGGAGGGGCT
GT---ACTACTCGGACGACTAGGAAAGCAGCCGCGATGTGCATGTGTACTGGCGATCGTCGTGTCGGGCTTGTGTTAGCT
AGGCGGTGGTGCCGCTTTGTCCGTTCCATTCTTTGTAGTAACTGTATAAACGCTGTACATATTAGCTTGGTTGGTTGGCT
TCAGCGAGAAATCAAGACGGTTTTTCACATTTGGTTTATTTTTCGATTATTTGGTTTGAAAAGTTGAAACACTGTGTAAC
AGATG-GAAATTATGCCCGTTAGTGCAGAAAGGAAACAAAGTTGTAAACGGAGAACGT----------------------
---------TTCTTCTCCTGTCCTTGTCATGGTATACC--AAA-------------------------------------
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------------TCGTGCTACTAATCGGGAGATAACT--TTTTTTAGACAAAATCGGGAGATAACTTGATGTGATTACCA
TGCGGGCGAGTTTTTCTGGTGAAAATGGCC------------------------------AAATGAGCCAATTGTTTATG
GTGACGGCAACGGGGACTATTGTTCATCATGCCTTTTTTTTTTTACTGTGAAAGGGTCCAAGAGCACCCACAGTGTATGG
TTTTT-CTGCCTCTAAGCCTTCTCTCTCCTCTCAGAGACAATCTCCATCCATTACAAACCTCAACCTTTAGCCCAAAATT
ATTAGTATCGCCTCTTAGCATGGAGGCTGCCTCTAAGAAATATAGAAATTGAGTGCCCCCATATGTCAGTTCTTGGGAAT
GGCTATGGTAGAATAAAATACATTGAGAAACTCGTTTTCTAAACCTGCAATCTAAGAGGTGACCACAACCT-TATACATT
ACGTAACTTCCCCTAAAACTTAGAGGCAACGCGTGGGACCCAACAGAGAGGCGGTGCTCCCTCTACACATTATGGATGCC
CTAAGGTCATATATTAAGCACTGCATGTCCTTACAAACACACTCATACAGAAAAATAAAGCTACATTCAAATCTTTGGGG
TGTCGAAGTCTTCTTCCTCCTACATCCACATCCATTGGCGGCGCATTGTGAGGATAGCTTCACCTCGGCGGAGCAAACTT
-TTTTTGAACCCATGAACTT
>chr2A_6
-----CATCTCGCAATGCCAGGACACAT-AGACAATACAATTCACCTTTCCCTCACGAGAAAAAAAAG-------GATGA
TACAGTTCAGCAGGCCACGGAATACGATGGGCGCTCGCATGGAATATGTGGATCCGCACACGGGTTGCACAGACCCTGGA
ATGGTAAACTGATGAGCAGCCAATTCTTAACTCGCGACATTGGAACGCCGGCTACGGCAAAATGGTTATGGCTGAGCGGG
CCACGACGTGTGACTTCTTTACCGGGTCAATCCTTCTCCGTCTCCGT-------------ACGTGAACCTTTCACGACGG
CTACGGCACTTGGCCACAGCATGCTCCACCGTACGAAGAGACGACCGACCGGACCATA----------------------
-------CACGCGTTCTATACA-CTTTGCTTGCACCCGTGCGGGTGCGACACAAACCACAACCAT-------TCAAAACA
CAGACCCAGGACGCGGAAAAACCAACGAAGCATCCTCGGCGCAGGCCGCGCGCCCGCCGGCGGAAGCGACGAGTCGACGA
CGACCGCGCCGGCACGTACTCACAAACCC------------ACCCCCGCCTTCCCTGCCGCTGACGCCCTCCCAACGCAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCACGCAAACCAGAGCCCGCGCACGCAACCGGCCGACGGCGCCAAACAAAACGGCACGCGACGCT
CAGCGAGGGCCGCGAGGAAGCAATAACAGAGGGAC---------CGGATGGTGTTCAGCGGCGCGTGGCTGGCGGCGGCG
GCGCGGGTGCCGGCGGAGCTGTGCCAGGGCCCGCCGCGGCCGGGGCAGCGGCGGCGGCTGCGGGCCGACGAGGTGCTGCG
CGCGCTGCTCACGCCGCCCGCGCGGGAGCTGGAGCGCCTGGCCGACTGCCTCTACGTCTTCTTCTGCCTGCCGCTGCCGG
AGCCGGACCAGTACTACGTGCCGGCGTCCGGGCGCGGCGGCTGGGTGGCGCGCCGGCCGCCCGGCGCCGTGCTGTACAGC
TACCGGCGGTCCCTCTCGCTCTCCTCCGACGGCGGCTCGTCGTCGTCCACGTGGATGGGCGGCTCCGACGAGGAGGGGCT
GTTGTATTACTCGGACGACTAGGAAAGCAGCCGTGATGTGCATGTGTACTAGCGATCGTCGTGTCGGGCTTGTGTTAGCT
AGGCGGTGCTGCCGTTTTGTCCGTTCCATTCTTTGTAGCAACTGTATAAACGCTGTACATATTGGTTTGGTTGGTAGGCT
TCAGCGAGAAATCAAGACGGTTTTTCGCATTTGGATTCTTTGGTTTGA----------------TGAAACACTGTATAAC
AGATG-GAAATTATGCCCGTTAGGGCA-AAAAGAAACAAAGTTGTAAACGAAGAACGT----------------------
---------TTCTTCTCCTGTCCTTGTCATGGTATATACAAAA-------------------------------------
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------------TCATGCTACTAATCGGGAGATAACTATTTTTTTAGACAAAACCGGGAGATAACCTGATGTG-------
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>chr2B_193
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-------------------------------------------------------------------------GAGCGGG
CCACGACGTGTGTCTTCTTTACCGGGTCAATCCTTCTCCGTCTCCGTCTCCGTCGGCGATACATGAACCATTCACGATGG
CTACGGCACTTGGCGACTGTATTCTCCATCGTACGAAGAGACGACCGACCGGAGGCACCGGACCATACACCGTCTCTGGA
TCCGGCGCACGCGTTCTGTACCCGTGCGG--------GTGCGACTGCGACACAAACCACAACCATTCAAAAATCAAAACA
CAGACCCAGAACGCGGAAAAACCAACGAAACATCCTCGGAGCAGGCCGCGCGCCCGCCGGCGGAAGCGACGAGTCGACGA
CGACCGCGCCGGCACGTACTCACAAACCCGCCCCGCCGGCCACCCGCGCCTTCCCCGCCCCTGACGCCCTCCCAACGAAA
TGACCTCCCGGAGACATTTATAAACTCCCCCCGCGCGCGCTCCCTTCCACGCCACCACTTCGCGCGCCCGACTTCTCGCC
TCACCTCTCCCCTCCCCTCCCCCCGCACT---------------------------------------------------
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---------------CCACGCAAGCCAGAGCACGCGCACGCAACCGATCAACGGCGCCAAACAAAACGGCACGCGACGAT
CAGCGAGGGCCGCGAGGAGGCAGCAGCAGCAGAGGGATTGGAATCGGATGGTGTTCAGCGGCGCGTGGCTGGTGGCGGCG
GCGCGGGTGCCGGCGGAGCTGTGCCAGGGGCCGCCGCGGCCGGGCCAGCGGCGGCGGCTGCGGGCCGACGAGGTGCTGCG
CGCGCTGCTCACGCCGCCCGCGCGGGAGCTGGAGCGCCTGGCCGAGTGCCTCTACGTCTTCTTCTGCCTGCCGCTGCCGG
AGCCGGACCAGTACTACGTGCCGGCGTCCGGGCGCGGGGGCTGGATGGCGCGCCGGCCGCCCGGCGCCGTGCTGTACAGC
TACCGGAGGTCCCTCTCGCTCTCCTCCGACGGCGGCTCGTCGTCGTCCACGTGGATGGGCGGCTCCGACGAGGAGGGGCT
GT---ATTACTCGGACGACTAGGAAAGC---CGTGATGTGCATGTGTA---GCGATCGTCGTGTCGGGCTTGTGTTAGCT
AGGCGGTGCTGCCGTTTTGTCCGTTCCATTCTTTGTAGTAACTCTATAAACGCTGTACATATTGGCTTGGTTGGTTGGCT
CCAGCGAGAAATCAAGACGGTTTTTCACATTTGGTTTCTTTTTCGATTATTTGGTCCG--AAGTTGAAAGACTGTATAAC
AGAGTAGAAATTATGCCAGTTGGTGCAGAAAGGAAACAAGGTTCTAAACGAAGAATACTTCTTCTCCTCCTGTGAAAAAG
AAAAAAAGCTTCTTCTCCTGTCCTTGTCATGGTATATC--AAAAGGAAAAAAACTAACTCCCAGACCATGTGACATCTTG
CACATCGCCCACACGTCTTTATGATCACTCATTTTGCCACGTGTTAACAGATGACATCAACAAGAATCTCTTTGATTTTC
GGCTTAAAAATGTTTTATCTCCTAACTAAAAAATTCAATTAAAAATCCGTTTCACCATTAAACCCATCTCGACGAGATCT
TCAAAATTAAACCCCATGTTGATATGTTTCGATGAATTTTTTTTGCCCAAAAGTTGCCATGATGTTTGTCATAGTGCTTA
AACTAAAGTTGCCATGTGGCAATTTTAGTTTGTAGAGCATGACAATTTTAGTAGTTTGATGATGACAATTCCAGTACTTT
GACCATGAAAATTAATTTTTGTATGAACCATGACAATTTTAAGTGCATGTATCATGGCAATTTTAGTTTATGGTTCATGG
CAAGTCTAATTTCTTAATTCCCGTTTTATAATATGTCAAAATTTACTTTTAAATGTAGAAGAAAATAGCTGAAACATATC
ATGACAATTTCAGTGTTAACACCATGGCAATTCATGTGCAATAGACATGGCAACTTTTAACCCAAAATAATTCGTCGAAA
TATATTGATATGAGATCTAGTTCGAAGATCTCGTCACGAGAGATTTAATGGTGAAAACGGATCTTCAATTGGATTTTTCA
TTTAAGAGATAAAACATTTAAAAAAATGAAAATTCAAAAAGATTCTCATATGCATGCATGCGGTGACGTGAAGCAGTTTG
TGTTTATATGGCGTGTGGGCGGATTTTGCTCTCACCACACGTGTGGGCGCTAGTGTTGTTTTATCAAAAAATAGTGCTAC
TTTTTTTAGCTGTCGTGCTACTAATAGG------------------------------AGAGAACTTGGTTTTTTTAGCA
GTAATTGTTTATTAGGTGAAATGCACTTAATAAACAATTGGTCCAATTGTTTATTAGGTGAAATGGACCAATTGTTGGTG
GTGACGGA------GACTATTGTTCATCATGTTTTTTTT-----ACTGCGAAAGGACCTAAGAGCATCGACAATGTATGG
TTTTTGCTGGCTCTAAGCCTTCTCTCCTCTCTTAGAGGCAACCTCCAGACATTGCAAACCTCAACCTCTGACCCAAAAGT
GCATG-----------------------GCATCTAAAGAATATAAAAATTGAGTGGCCTCATATGTCAGTTCTATGGAAT
GGCTATGGTAGAATAAA-TATATTGAGAAACTTGTTTTCTAAACCTGCAATCTAAGAGATGACTACAACCTCTATACATT
ACATGCTTTT-CCTAAAACTTAGAGGCAACGAGTGGGACCCA--------------------------------------
-----------------GCACTACATGTCCTTACAA-CACACCCATGCAGAAAAAAAAAACTACATTTAAATCTTT-GGG
TGTCGAAGTCTTTTTCCTTTTGCATCCAC------TGGCGGCGCATTGTGAGGATAGCTTCACCTCGGCGGAGCAATTTT
ATTTTTGAACCCATGAACTT
>SNPs
SSSSS-----S-SS-----------SSSS--S-S------------------S--SS-S--S------SSSSSSS-----
----S--------------------------S-S----------------------------------------------
-------------SS-----S--S----------S---------------------------------------------
------------SS---S------------------S----------------------------------S--S-----
-------------S---S------------------------------------S---------------------S---
S-------------------------------------------------------------------------------
---S---S-----------------------S------------------------------------------------
-------------------------SSSSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------------------------------------------------------------------
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---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
---------S-------S--------S-----S--SSSS-S---------------------------------------
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------S--------------------------S----------------S-----------------------------
--------S-----S------------------------------------------------S----------------
-------------------------------------S-----------------SS-SS---------------S----
--------------------------------------------------S-----------------------------
------------------------------------S-------------------------------------------
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-----------------------------------------------------S-------------------S---S--
SSSSSSSSSSS--SSS--SSSSSS-SSSSS-----------------------------------SS---------SS--
-------SSSSSSS-----------------SS------SSSSS----S------SS-S-------S-S---S-------
---------S----------------SS----S----S---S-----SS----S-------------S-SS-------S-
SSSS-SSSSSSSSSSSSSSSSSSSSSSS--S-----SS------S----------S--S--------------SS-----
-----------------S--S-----------S-------------------------S----S----------------
--S-SSS--SS--------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-----S-------------S-----S---S--------S---S-------S--------S---
------------S-----SS-S-------SSSSSS-----------------------------------------SS--
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>forward_488
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--------------------------------------------------------------------CCATTCAAAACA
CAGCCCCG------------------------------------------------------------------------
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>reverse_1474
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---------------------------------CGATGTGCATGTGTACTGGC---------------------------
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