>input_sequence_82258
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-----------------------------------ATGGCTGGCAAGTACATCGTCGCCGGCCTCGTCGGCTCCTGTGTC
ATCTCGTACGCCTGCGACTACATCGTTTCTCAGAAGAAGATCTTCGGTGGTATGTAGTGTGTCCTGTCT---------CT
GTTGTGAATTCACAGCATAGTCAGCATTACACTCTTGGTGCT---AAAAAAAAGTGTTCAAAAACCATTTCCATTTGTGT
TAATTATTCTTACCATGCTGTTACTCCTTGATCAGGCACCATCCCAGGGACTGTGTCCGACAAGGAGTGGTTGAAGGCGA
CGGAGCAGAGGTTCCAGGCCTGGCCCCGCGTCGCTGGGCCGCCGGTCATCATGAACCCCATCAGTCGCCAGAACTTCATC
GTTAAGGACCTCAACCCCTGA-----------------------------------------------------------
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>chr7A_1_TraesCS7A01G041600
GGGATTAGGAGCTCCGGGAGTCGGGAGGCCAGCTTAGGTTTTGCTCTCGCGGAGGG-----TGACCCCGTCTGGATCGCG
CGCGCCGGCTTCCCGTCGGCGGGCAAAAGGCTCGCGGCGT--GCGTGTGTGCGCCCCGTGCTGCAGTTGTAGGTCGCGCC
GCGAGCTGCTGCTTGCGCTCGAGTTTC-------TTTCTGGCTCGGCAACAGCAGATCCAGAGTAGGATTCGCCTAGCGC
GTGCCCCAGGG------T--GGGGAGAGATGAGGCAAACTGGTGTCTTGACTTTTGTGAAGGAAGTTTAGATTGGTGCGT
TGCTCTTG----CTGTATGAGGGCCACGGTTGATGAATCTTGACCCGAGCAGAGCAGCGTGC----------T-AGTTTC
CAATTGATAGATAAGGGTGAGATGTTTCTCTTCTCCCTAGGTTGGTTTTCTCA----GCCGGGCTCAAGTGCTGAGTGCT
GCGTATTTGGGTCTTGCTAT-AACTGCTCTCAAGTGAATCCT--------------------------------------
------------------------GTATCTGCGATAGTAGAAGTGCCTCTCATTTTCGCTTGTT---------ACAATGA
GAAAAGCGAGCAGGTAGCCATGTGTTGCTAGTTTGTTTGCTTG----GTGTACCATGTTTTCTGCAAGTGCCTCAGTCCT
GCAAC-CGAATGAGCCTAGTTTTAGGTTAGGTCACATTTCT------------------------GTGTTATCAGTA---
------ACTCATTCGGGTTACGGAGAGTAAGATAACTTCCCAAGTGGCTTGAGGATTGTTCGCATCTGGGTTCTGTTTCT
CTTAAT----GAACGATAAAAGCTTTT-----------------------------------------------------
---------------------------ATGTAAGAAGTATATTAACAGATAACAGCTTTGCCTCATTATGTACACGGTAC
GACTATGGTAAAACATCACTTTGGTCATCTCAAGCCTGAAGGGCCTACTGAAGGATGTAGTTGGTAGAACCTTCTCATTA
TTTGCAAATATTTCATTCCAGGCTTGGCAACTTTGATGGTTTCAACCTTGAACAATCTGTACAAGCTTCCTGCTCTCTCT
TGCTCACTTTCTGTGTACTCAACTGTGCAGCTCCAATGGCTGGCAAGTACATCGTCGCCGGCCTCGTCGGCTCCTGTGTC
ATCTCGTACGCCTGCGACTACATCGTTTCTCAGAAGAAGATCTTCGGTGGTATGTAGTGTGTCCTGTCT---------CT
GTTGTGAATTCACAGCATAGTCAGCATTACACTCTTGGTGCT---AAAAAAAAGTGTTCAAAAACCATTTCCATTTGTGT
TAATTATTCTTACCATGCTGTTACTCCTTGATCAGGCACCATCCCAGGGACTGTGTCCGACAAGGAGTGGTTGAAGGCGA
CGGAGCAGAGGTTCCAGGCCTGGCCCCGCGTCGCTGGGCCGCCGGTCATCATGAACCCCATCAGTCGCCAGAACTTCATC
GTTAAGGACCTCAACCCCTGAGGCCCAAGACCTCGAGGTAGAGCAGCCATCTAGACTAAACTCACTGCCCGCTAAACCTC
GTCTCCGCACCATTTTTCATGGCACTGATTCTAGATCTTCCATGCGTTGGTTTCAGGTTTGCTGTCGGTTGGAACCTTTA
CCCTGATGGCGATGCCTGTTGCTAAATCTACATATATGTGCTGGCTGTACTCTCGAGGCTATTTTGTCTGTCTCAATAAT
TAAAACAACACTATTGTGTAGGGCACCGTGGTTATATTTCTTCTGAAGAACAGAAGAGAACCTGAAGCATATTTGCTTTG
GACTTTTTGTCATCTTTCGTTTGCACAAACATATGTTTA-TTTTCAATTTGTGCTTGTCAGTGCATCGGAGTATGTGGCT
TGCAAATTCAGACCCTTTTCCTAACTCCAGGCTAGGATCCAGATGGCCTCTGATCATAGTCTTGTTTCTTAGCACTGAAA
TAATATCCAACATTTGGCAATCATTCTAGCTGCATTCTTTTGTACGCATATTTGATAGCAGCGCAGTGCTGAATGCTGAT
GCACTGCCGAGTGACACATGGTCCATAGTGATCCTTCTTTCCCTCTTTCAACGGCTGAGCCTTCTTGTCTAAAAAAAAAG
AAGTGCCAGTTTTATTTTATGTTTTGCAATCCAGGCTCTATTAAGCTTTTATGAATGAAAATCTTATAACTATCTTAAAC
TTTTTTCCTCTAGGATTATTTTTTCCACCAAATCATTAACAAAAGAATCACCAATGCAAGCTATGATTAGCATCACTGAA
GACAGACAAGAGAGGCCTCTCAAGAACAAACGAAGAGGAATCACTGAAAGCTGGTCATGTAGTGTTAATTACTTGCGGGA
TATCCATCACATAAAAACTTGGATACTACGGGTGTGTTTGGTTTACTGGATAGCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTGGTGGCAGGGGCTGCGATATGGGGTTGTGCGGGGCAG
>chr7D_1
GGGATTAGGAGCTCCGGAAGTCGGGAGACCAGCTTAGGTTTTGCTCTCGCGGGCGG-----AGACCCCGTCTGGATCGCG
CGCGCCGGCTTCCCGTCGGCGGGGAAAAGGCTCGCGGCGTGCGCGTGTGTGCGCCCCGTGCTGCAGCTGTAGGTCGCGCC
GCGTGCTGCTGCTTGTGCTCGGG-----------TTTCTGGCTCGGCAACAGCAGATCCAGAGTAGGTTTCGCGTAGCGC
GTGCCCCAGGATGGGGAGAGGGGGAGAGATGAGCCAAACTGGTGCCTTGACTTTTGTGAAGTGGG-TTGGGTTGGTGCGT
TGCTCCTGCCTGCTGTACGAGGGGCACTGTTGCTGGATCTTGACCGGAGCAGCGTGCAGCTGCATAGCTCCGT-AGTTTC
CAACTGATGGATGAGGGTGAGATGTTTCTGT-----CTACGCTGGTCTTCTCCCCCGGCCGGGTTCAAGTGCTGAATGCG
TCCCC----GGTCTTGCTATAAACTGCTCTCAAGTGAATCCT--------------------------------------
------------------------GTCTCTGCGATACAAGAAATGCCTCTCATTTTTGCCTGTT---------ACAATGA
GAACAGCGAGCAGGTAGCCATGTGTTGCTAGTTTGTTGGTTTG----GTCTACCATGTTTTCTGCAAGTGCCTCAGTCCT
GCAAC-TGAATGAGCCTAGTTTTAGGTTAGGTCACATTTCC------------------------GTGTTATCAGTG---
------ACTCATTAGGGTTATGGAGAGCAAGATAACTTCCCAACTCGCTTGGGGATTGTTTGCATTTGGGTTCAGTTTTT
GTTAATGTGTGAAAGATAAAAGCCGGAGGGATTTTGCGCATGTTCCTATCGTCAAGGACGAATTTGTATACTGAAATGAG
CATGGGAAATGCCCATATATAATTATGATGTATGAAGTATATTAACAGAGAACAGCTTTGCCTCATTATTTGCACGGTAC
TACTATGGTAAAACATCACTTTGGTCATCTGAAGCCTGAAGGGCCTACCGACGGATGTAGTTGGTAGAACCTTCTCATTA
TTTGCAAATCTTTCATTCCAAGCTTGGCAACTTTGATGATTTAAACCTTGAACAACCTGTACAAGTTTCCTGCCTTCTGT
TGCTAACTTTCTGTGTACTCAACTGTGCAGCTCCAATGGCTGGCAAGTACATCGTCGCCGGCCTCGTCGGCTCCTGTGTC
ATCTCGTACGCTTGTGACTACATCGTTTCTCAGAAGAAGATCTTCGGTGGTACGTTGTGTGTCCTGTCTCTATAGTTCCT
GTTGTGAATTCACAGCATAGTCAGCATCACACTCTGGTGCTTCCAAAAAAAAAGTGTTCAAAAACCATTTCTGTTTGTGT
TAATTATTCTTACCATGCTGTTACTCCTTGATCAGGCACCATCCCAGGGACTGTGTCCGACAAGGAGTGGTTGAAGGCGA
CGGAGCAGAGGTTCCAGGCCTGGCCCCGGGTCGCTGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAGAACTTCATC
GTCAAGGACCTCAACCCCTGAGGCTCAAGACCTTAAGGTAGAGCAGCCATCTAGACTGAACTCGCTGCCCGCTAAACCTC
GTCTCCGCACCATTTTTCATGGCACTGATTCTAGATCTTCCACGCGTTCGTTTCAGGATTGCGGTCGGTTCGAACCTTTA
CCCTGATGGCGATGCCTGTTGCTAAATCTACCTATATGTGCTGGCTTTACTCTCGAGGCTATTTGGTCTGTCTCAATAAT
TAAATCAACACTATTGTGTAGGGCACCGTGGTTATATTTCTTCTGAAGAACAGAAGAGAACCTGAAGCATATTTGCTTTG
GACTTTTTGTCATCTTTCGTTTGCATAAACATATGTTTACTTTTCAATTTGTGCTTGTCGGAGCATTGGAGTATGTGCCT
TGCAAATTCAGACCCTTTCCCTAACTCCAGACTAGGATCCAGATGGCCT-------------------------------
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>chr4A_1
GGGATTGGGAGCTCCGGGGGTCGGGAGACCAGCTTAGGTTTTGCTCTCGCGGGCGGGGCGGAGACCCCGTCCGGATCGCG
CGCGCCGGCTTCCCGTCGGCGGGGAGAAGGCTCGCGGCGTGCGCCTGTGTGCGCCCCGTGCTGCAGCTGTAGGTCGCGCC
GCGAGCTGCTGCTTGCGCTCGGGTTTCTGGCCGGTTTCTGGCTCGTCAACAGCAGATCCAGAGTAGGATTCGCCTAGCGC
GTGCCCAGACCCCAGGAT--GGGGAGAGATGAGCCAAACTGGCGCCTTGGCTTTTGTGAAGCGGG-TTAGGATGGTGGGT
------------------------------TGCTGGATCTTGACCGGAGCAGCGTGGAGCTCCACAGCTCGGAGAGTTTC
CTATTGATGGATGTGGATGGGATGTTCAACTGCTGA--------------------------------------------
----------------CTATAAACTGCTCTGAAGGGAATCCTTTTTTTATTTTCGGCAAAGGGTGAGTTCTATTGGCTCC
AAATGAAGCTCAGAACTGCATCCTGTCTCTGTGGTACAAGAAATGATTTCCCTTTCTGCGTGTTAATTGTCACACAATGG
GAAAATCTAGCAGGCAGCTATGTGTTGCGAGTTTGTTTGCTGCTTCAGTTTACCATGTGTTTTGCTGGTGCCTCAGCCCT
GCAATTTGAATGAGCCTAGTTT-AGGTTAGGTATCACATTTGCTGCAACTCACGTGTCGCGACCAGTGTTATCAGCAGCT
AACCATATTCATTAGGGTTTCAGAGATTGAGTTAACTTTCCAGCTGGCTTGGGGGTTGTTTGCATTCGGGTTCAGTTTTT
GCCAA----TGAAAGATAAAAGCCGGAGGGATTTTGTGCATGCTCCTATCCTCAAGGATGAATTTGTATACTGAAATGAG
CATGGGAAATACCC----ATGATTATGATGTAAGAAGTATATTGACAGATAACAGCGTTGCCTTGTTATTTTTATGCTAC
TACTAAGGTCTACCATTTTT---------------------GGCCTACTGAGTGATGCACTTGGTAGAACCTTCTTATTA
TCAGCAAATGTTTCATTCCAAGCTTGACAACTTTGATGGTTTAAACCTTGAATTATCTGTACAAGTTTCCTGCTCTCTTT
TGCTGACTTTCTGTGTACTCAACTGTGCAGCTCCCATGGCTGGCAAGTACATCGTCGCCGGCCTCGTCGGCTCCTGTGTC
ATCTCGTACGCCTGCGACTACATTGTTTCTCAGAAGAAGATCTTCGGTGGTATGTTGTGTGTCTTGCCTCTATAGTTCCT
GTCGTGAATTAACAGCATAGTCAGCATTACACTGTTATTGGTT-AAAAAAAGCGCAGTCAAAAACCATTTCC-TTTGTGT
TAACTACTCTTACCATGCTGTTACTCCTTGATCAGGCACCATCCCAGGGACTGTGTCCGACAAGGAGTGGTTGAAGGCGA
CGGAGCAGAGGTTCCAGGCCTGGCCTCGCGTCGCCGGCCCGCCGGTCATCATGAACCCCATCAGCCGCCAGAACTTCATC
GTCAAGGACCTCAACCCCTGAGGCCCAAGACCTTGAGGTAGAGCAGGCATCTAGACTGAACTCACTGCCCGCTAAACCTC
GTTTCCGCACCATTTTTCATGGCACTGATTCTAGATCTTCCACACGTCCGTTTCAGGTTTGCGGTCGGTTGGAACCTTTA
CCCTGATGGCGATGCCTGTTGCTAAATCTACCTATATGTGCTGGCTGTACTCTCGAGGCTATTTTGTCTGTCTCAATAAT
TAAAACAACACTATTGTGTAGGGCGCCGTGGCTATATTTCTTCTGAAGAACAGAAGAGAACCTGAAGCATATTTGCTTTG
GACTTTTTGTCATCTTTTGTTTGCATAAACATATGTTTACTTTTCAATTTGTGCTTGTCGGAGCATTGGAGTATGTGCCT
TGCAAATTCAGACCCTTTCCCTAACTCCAGACTAGGATCCAGATGGCCT-------------------------------
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>SNPs
---------------------------S------------------------SS-------S------------------
-----------------------S------------------------------------------S-------------
---------------------S----------------------------------------------------------
----------S----------------------S----------S----------------SSS-S----S---------
-----S-----------S-----S---S----S--S---------S------S-SS-S-SS-------------------
--------S---S------------------S--SS---S-S----S-----S----------S-----------S---S
S-SSSSSSS-----------------------------------------------------------------------
--------------------------S---------SS----S-------------S--S--------------------
-------------------------------------------------S------------------------------
------S-------------------------------------------------------------------------
-------------S-----------------------------S-------S--------S----S-------S----S-
S------------S---------SSSS-----------------------------------------------------
---------------------------------------------------------------------S-S--------
S-----------------------------S--------------------S----------------------------
---------S----------S---------------------S----------------------S------------S-
----S---------------------------------------------------------------------------
-------------------------------------------------------S------------------------
-------------------------------------S--S-------------------------------S-------
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----------------------------------------------------------------S---------------
--S------------------------------S-----------------------S----------------------
------------------------------------------S-----S-------------S-----------------
-------------------------------S------------------------------------------------
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-------------------------S---------------------------------S-S----S----------S--
------------------S-----------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_486
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------------------------------------------------------------------AAGTGCTGAGTGCT
GCGTAT--------------------------------------------------------------------------
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>reverse_1980
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-----------------------------------------------------------AGTGCATCGGAGTATGTGGC-
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