>input_sequence_82251
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-------------------------------------------ATGGAGTCATCACACAAGCTTTTCCCGGCCGTTGCCA
TCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAAACATGCATAT
GATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTGGTGTTCAAAAAACTAACCATGTGCGCTTATTCA
TGTTTGTCTTCAGAGGTGGCGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGCTGTGCTTCGT
GTCCGAAAACTGCGCCGGTGTGTGCGTTGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGGAGGTGCATGT
GCACGAAGGAGTGCTAG---------------------------------------------------------------
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>chr2D_1_TraesCS2D01G048200
TCTCATGGGATCAGTTCCGTGGTATCATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAAGACAAACGAC
CATGGGCACCAATCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATGTGGGTTCTCT
GTTATATATGTGTGTGTAATATAATATGGAACTGATATATTCTAAGACTTGGATGGTATGTTTGGAGTATCAAGCTACTT
ATTGCTGTACTAATTATTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGGTAATGCCCAC
TATTTATAATTATATCTTCCATGCGATTCCATGTCGTTCTATAAGTAGAACTACTTTCCAGTACTAGTAGAATAATCTAT
ATA--GTGTCTCAAGCTTGTTTTTATCAGTAATATCTGAATTTTAAGGTTAAAGTTGGTCTCTATTATCTGTACACGTAT
AGTACAGAAATGTTACATATTTTCCAAGACGAAGGAGAGTGGGGTACACAAACTGACCATGGCCCTCCCCTGCACGACCA
ACCACAAATTAGATGCCCACAAAAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCCTAAAAATTGT
AGTTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCGTGGCTGCTCCTGGTGCACAGCTATTATTAGGTAGTTGCACA
TATAGGTGTGAGATGCTCATGTCGTGCTGAATTATGCATTTGCTTGCATGTCATCAGCGTTGTCTGGTCGTGCACATACA
AGCCTGTTATTAGTATGTTCCATATATTGATCCGAGATGTTCCTGTGGTGCTGAATTATGCATCACCATGTATATGTGAT
TGCGGCTGCGCGCGTATATAAGCATG-CACAAGCATCGATCCTAACTTGTCATTCAGAGTTTTACAATCCCAGATAAGTG
TACATTTTACAGGGCGCGTTTTGGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCGGCCGTTGCCA
TCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAAACATGCATAT
GATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTGGTGTTCAAAAAACTAACCATGTGCGCTTATTCA
TGTTTGTCTTCAGAGGTGGCGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGCTGTGCTTCGT
GTCCGAAAACTGCGCCGGTGTGTGCGTTGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGGAGGTGCATGT
GCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGACGGCGACAATTATGAACTTATTCTTTGCATGGT
TTGAATTACCTTTGTTCGTATGTTTGATAAAGTTCCAGGTTCACCGCGATGTTATCCTTGGGTTCGAATGAAGGAAAATG
TTTTGTTTCTTTAAAGAAAAGAAAATGTGTGGCCCATGAGAGTGTTCATGGGATCACATGTATCTCCTTTTTTTCC--GT
ATGTTTCTCTTCTTTCTGGGTGTGCCTAGCTCTTATCTAGATGAGACATAACTAAGTACCATCTAACTCCTATGCCATTT
GATTTTACATAAAGATTCGTGAAGA-TTTTTTCCTTTCCTTTTTCTTTGATTAATCAAATGGGGTACAAGTTAGATGGAC
ATTGTTAATTCTCGTCTAGATGAGAATTAGCAAATCCGTTTCTTTATATATAGAAGTT----------------------
--TTT--T--TAGATAGATTTCACTGTAGCTGAACTATCAGAGTTTTGAT-TTTTTTAGCGGAACCAGATTTCGGGTACA
AATGTCCAACTAGTCAAGCCACTAATTGAGAAGATTTAGCCCAAGAATAGCTGGACAGGTCTACGAATGAAACAGGATGT
GAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCCAACATCAGCCCATAAGTCTAACACACGTCAGC
CGTTGATCTTGTTGGGGAACGTAGTAATTTCAAAAAATTTCTACGCACACGCAAGATCATGGTGATGCATAGCAACGAGA
GGGGAGAGTGTTGTCCACGTACCCTCGTAGACCGATAGCGGAAGCGTCTAACACAACGCGGTTGATGTAGTCGTACGTCT
TCACGATCCGACCGATCAAGTACCGAACGCACGGCACCTCCGAGTTCAGCACACGTTCAGCTCGATGACGTCCCTCGAAC
TCCGATCCAGCCGAGTGTTGAGGGAGAGTTTCGTCAGCACGACGGCGTGGTGACAATGTTGATGTTCTACCGACGCAGGG
CTTCGCCTA
>chr2D_1
TCTCATGGGATCAGTTCCGTGGTATCATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAAGACAAACGAC
CATGGGCACCAATCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATGTGGGTTCTCT
GTTATATATGTGTGTGTAATATAATATGGAACTGATATATTCTAAGACTTGGATGGTATGTTTGGATTATCAAGCTACTT
ATTGCTGTACTAATTATTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGGTAATGCCCAC
TATTTATAATTATATCTTCCATGCGATTCCATGTCGTTCTATAAGTAGAACTACTTTCCAGTACTAGTAGACAAATC--T
ATA--GTGTCTCAAGCTTGTTTTTATCAGTAATATCTGAATTTTAAGGTTAAAGTTGGTCTCTATTATCTGTACACGTAT
AGTACAGAAATGTTACATATTTTCCAAGACGAAGGAGAGTGGGGTACACAAACTGACCATGGCCCTCCCTTGCACGACCA
ACCACAAATTAGATGCCCACAAAAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCCTAAAAATTGT
AGTTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCGTGGCTGCTCCTGGTGCACAGCTATTATTAGGTAGTTGCACA
TATAGGTGTGAGATGCTCATGTCGTGCTGAATTATGCATTTGCTTGCATGTCATCAGCGTTGTGTGGTCGTGCACATACA
AGCCTGTTATTAGTATGTTCCATATATTGATCCGAGATGTTCCTGTGGTGCTGAATTATGCATCACCATGTATATGTGAT
TGCGGCTGCGCGCTTATATAAGCATGTCACAAGCATCGATCCTAACTTGTCATTCAGAGTTTTACAATCCCAGATAAGTG
TACATTTTACAGGGCGCGTTTTGGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCGGCCGTTGCCA
TCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAAACATGCATAT
GATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTGGTGTTCAAAAAACTAACCATGTGCGCTTATTCA
TGTTTGTCTTCAGAGGTGGTGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGCTGTGCTTCGT
GTCCGAAAACTGCGCCGGTGTGTGCGGTGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGGAGGTGCATGT
GCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGACGGCGACAATTATGAACTTATTCTTTGCATGGT
TTGAATTACCTTTGTTCGTATGTTTGATAAAGTTCCAGGTTCACCGCGATGTTATCCTTGGGTTCGAATGAAGGAAAATG
TTTTGTTTCTTTAAAGAAAAGAAAATGTGTGGCCCATGAGAGTGTTCATGGGATCACATGTATCTCCTTTTTTTCC--GT
ATGTTTCTCTTCTTTCTGGGTGTGCCTAGCTCTTATCTAGATGAGACATAACTAAGTACCATCTAACTCCTATGCCATTT
GATTTTACATAAAGATTCGTGAAGA-TTTTTTCCTTTCCTTTTTCTTTGATTAATCAAATGGGGTACAAGTTAGATGGAC
ATTGTTAATTCTCGTCTAGACGAGAATTAGCAAATCCGTTTCTTTATATATAGAAGTT----------------------
--TTTTTTTTGAGATAGATTTCACTGTAGCTGAACTATCAGAGTTTTGAT-TTTTTTAGCGGAACCAGATTTCGGGTACA
AATGTCCAACTAGTCAAGCCAATAATTGAGAAGATTTAGCCCAAGAATAGCTGGACAGGTCTACGAATGAAACAGGATGT
GAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCCAACATCAGCCCATAAGTCTAACACACGTCAGC
CGTTGATCTTGTTGGGGAACGTAGTAATTTCAAAAAATTTCTACGCACACGCAAGATCATGGTGATGCATAGCAACGAGA
GGGGAGAGTGTTGTCCACGTATCCTCGTAGACCGATAGCGGAAGCGTCTAACACAACGCGGTTGATGTAGTCGTACGTCT
TCACGATCCGACCGATCAAGTACCGAACGCACGGCACCTCCGAGTTCAGCACACGTTCAGCTCGATGACGTCCCTCGAAC
TCCGATCCAGCCGAGTGTTGAGGGAGAGTTTCGTCAGCACGACGGCGTGGTGACAATGTTGATGTTCTACCGACGCAGGG
CTTCGCCTA
>chr2A_1
TCTCATGGGATCAGTTCCGTGGTATCATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAAGACAAACGAC
CATGGGCACCAATCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATGTGGGTTCTCT
GTTATATATGTGTGTGTAATATAATATGGAACTGATATATTGTAAGACTTGGATGGTATGTTTGGATTATCAAGCTACTT
ATTGCTGTACTAATTATTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGGTAATGCCCAC
TATTTATAATTATATCTTCCATGTGATTCCATGTCGTTCTACAAGTAGAACTACTTTCCAGTACTAGTAGACAAATC--T
ATATAGTGTCTCAAGCTTGTTTTTATCAGTAATATCTGAATTTTAAGGTTAAAGTTGGTCTCTATTATCTGTACATGTAT
AGTACAGAAATGTTACATATTTTCCAAGACGAAGGAGAGTGGGGTACACAAACTGACCATGGCCCTCCCCAGCACGACCA
ACCACAAATTAGATGCCCACAAAAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCCTAAAAATTGT
AGTTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCGTGGCTGCTCCTGGTGCACAGCTATTATTAGGTAGTTGCACA
TATAGGTGTGAGATGCTCATGTCGTGCGGAATTATGCATTTGCTTGCATGTCATCAGCGTTGTGTGGTCGTGCACATACA
AGCCTGTTATTAGTATGTTCCATATATTGATCCGAGATGTTCCTGTGGTGCTGAATTATGCATCACCATGTATATGTGAT
TGCGGCTGCGCGCGTATATAAGCATGTCTCAAGCATCGATCCTAACTTGTCATTCAGAGTTTTGCAATCCAAGATAAGTG
TACATTTTACAGGGCGCGTTTTGGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCGGCCGTTGCCA
TCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAAACATGCATAT
GATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTAGTGTTCAAAAAACTAACCATGTGCGCTTATTCA
TGTTTGTCTTCAGAGGTGGTGCCAGCCCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGCTGTGCTTCGT
GTCCGAAAACTGCGCCGGCGTGTGCGGTGCGGAGGGGTTCACCGGCGGCAAGTGCTCCGGCTTGAAGAGGAGCTGCATGT
GCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGATGGCGACAATTATGAACTTATTCTTTGCATGGT
TTGAATTACCTTTGTTCGTATGTTTGATAAAGTTCCAGGTTCACCGCGATGTTATCCTTGTGTTCGAATGAAGGAAAATG
TTTTGTTTCTTTAAAGAAAAGAAAATGTGTGGCCCCTGAGAGTGTTCATGGGATCACATGTATCTCCTTTTTT-CC--GT
ATGTTTCTCTTCTTTCTGGGTGTGCCTAGCTCTTATCTAGATGAGACATAACTAAGTATCATCTAACTCCTATGCCATTT
GATTTTACATAGAGATTCGTGAAGA-TTTTTTCCTTTCCTTTTTCTTTGATTAATCAAATGGGGTACAAGTTAGATGGAC
ATTGTTAATTCTCATCTAGACGAGAATTAGCAAATCCGCTTCTTTATATATAGAAGTT----------------------
--TTTTTT--GAGATAGATTTCACTGTAGCTGAACTATCAGAGTTTTGATTTTTTTTAGCGGAACCAGATTTCGGGTACG
AATGTCCAACCAGTCAAGCCAATAATTGAGAAGATTTAGCCCAAGAATAGCTGGACAGGTCTACGAATGAAACATGATGT
GAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCTAACATCAGCCCATAAGTCTAACACACGTCAGC
CGTTGATCTTTGTTGG----------------------------------------------------------------
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>chr2B_1
TCTCATGGGATCAGTTCCGTGGTATTATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAAGACAAACGAC
CATGGGCACCAACCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATGTGGATTCTCT
GTTATATATGTGTGTGTAATATAATATGGAACTGATATATTGTAAGACTTGGATGGTATG-TTGGATTATCAAGCTACTT
ATTGCTGTACTAATTACTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGGTAATGCCCAC
TATTTATAATTATATCTTCCATGTGATTCCATGTCGTTCTACAAGTAGAACTACTTTCCAGTACTAGTAGACAAATC--T
ATATAGTGTCTCAAGCTTGTTTTTAC------------------------------------------------------
---------------------TTCCAAGACGAAGGAGAGTGACCATGA--------------CCCTCCCCTGCACGACCA
ACCACAAATTAGACGCCCACA-AAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCCTAAAAATTGT
AGCTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCATGGCTGCTCCTGGTGCACAGCTATTATTAGATAGTTGCACA
TATAGGTGTGGGATGCTCATGTGGTGCTGAATTATGCATTTGCTTGCATGTCATCAGCATTGTGCGGTCGTGCACATACA
AGCCCGTTATTAGTAAGTTCCCTATATTGATCCGAGATTTTCCTGTGGTGCTGAATTATGCATGACCATGTATATGTGAT
TGCGGCTGCGCGCGTATATAAGCATGTCACAAGCATCGATCCTAACTTGTCATTCAGAGTTTTACAATCCCAGATAAGTG
TACATTTTACAGGGTGCGTTTTAGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCGGCCGTAGCCA
TCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCGTTTCGCTCTTGTTGCCAGAACAACACCATGTAAACATGCATAT
GATATCAGTGTGCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTAGTGTTCAAAGAACTAACAATGTGCGCTTATTCA
TGTTTGTCTTCAGAGGTGGTGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGCTGTGCTTCGT
GTCCGCAAACTGCGCCGGTGTGTGCAATGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGGAGCTGCATGT
GCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGATGGCGACAATTATGAACTTATTCTTCGCATGGT
TTGAATTACTTTTGTTCGTATGTCTGATAAAGTTCCAGGTTCACCGCGACGTTATCCTTGGGTTCGAATGAAGGAAAATG
TTTTCTTTCTTTAAAGCAAAGAAAATGTGTGGCCCATGAGAGTGTTCATGGAATCACATGTATCTCCTTTTTT-CCCTGT
ATTTGTCTCTTCTTTCCGGGTGTGCCTAGCTCCTATCTAAATGAGACGTAACTAAGTATCATCTATCTCCTATGCCATTT
GATTTTACATAGAGATTCATGAATACTTTTTTCCTTTCCTTTTTCTTCGATTAATCAAATGGTGTACAAGTTAGATGGAC
ATTGCTAATTCTCATCTAGAAGAGAATTAGCAAATCCGCTTCTTTATATATAGAAGTCGCCCGGACTAGCAGTTTGTAGT
AGTTTTTT--TAGATGGATCTCACTGTAGATGAACTATCAGAGTTTTG--TTTTTTTAGCGGAACCAAATTTCAGGAACA
GATGTCCAACCGGTCAAGCCAATAATTGAGAAGATTTAGCCCAAGAATAGCTGGGCAGGTATACGAATGAAATGAGATGT
GAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCCAACATCAGCCCATAAGTCTAACACACGTCAGC
CGTTGATCTCTGTTG-----------------------------------------------------------------
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>SNPs
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------------------------------------------------------------------S-------------
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-----------------------------------------------------------------------SS----SS-
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-------------------S------------------------------------------------------------
--------------------------S-----------------------------------------------------
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--------------------S-----------------------------------------------------------
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---------------------S----------------------------------------------------------
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---------------------S----------------------------------------------------------
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>forward_784
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--------------------------------------------TGCATGTCATCAGCGTTGTC----------------
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>reverse_1781
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--------------------TGAGAATTAGCAAATCCGTTTCTT------------------------------------
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