>input_sequence_82223
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--------------------------------------------ATGGAGGTGGAGGCCGCGAGGTGCGAGTGCTGCGGC
TTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAGTACATGGGCCGCTGGGTCTGCGGGCTCTGCGC
GGCTGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCGCGCCATCACCACGGCCGAGGCGCTCGACCGGC
ACGGCGCTTTCGCGAGGGAGGCGCCGCGTGCGCCCGGGAAGAAGGCGTCCGAGGAGCTCGTGGCCGCCGTGTCGCGCCTG
CTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCACCCGCCGCGCCGCAGGGGCGCAAGGTGGCGGCAGGCCCCCGGTGCAC
GGACGCTGACGACGCCTGA-------------------------------------------------------------
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>chr7B_1_TraesCS7B01G067400
GAAAAAAGAAG-AAAGAAAAGTGGCCTTATGATTGGGGGCACCAACCCAACCCAAGACAAAACCGAGGAGCCACGGGCGA
CAAAAACACTCCTGTCGCGATAAAATCGC-GAGAGCGACGTGTCAGGCGCACGAAAACAGCAGGC-GGGGCCCAGCAACA
GCGACGGCCCATCCGAACCCGC-ACCAAATCCACCCGACCCCTGGGCACGGCGAGCAGCCCGCGCGGCCCACCGTGGCCA
GCTGTCAGTACTCACAGACCACGCATTCAAAAGGCCGGGCGCCCACCCAGCTCAGCCCCCCGACGTGGACCTCCCTCTAG
CATCCCCACGCTACTGGGGAACCGGCTCGTCTACCGTGCTGAAAGCACGGTAGGGGAGCTACACTAGCCTGCAGTGCCTC
TGTGATTTTTCACTGCGCGCTACATGAACTCATGAACAGTGTGGTGCTACAGGGTGCCCGCTACAGTACATATTTATTAC
AGTAGATTCGCTACAGTGCATAGTGCTATAGGGCCCTGCAGTGCCTTCTGCGATTCCCACTGCGTGGCTACTGTAGCTCC
CTGCCGTGCCTTCAGCACGGTAGACGAGCCGGTTCCCGCTACTGGCTACGGCCCGTACAGGAGCTACCACCTCCCCCTGC
CCCCACCGACACGCGGGGCCAGCGGGGCAAGACGTGGCCACATGCTCCACGGCGCTGGCGGTGCATAAATACCACCTGGC
TGCCACCGCATGTCCCGGTGCGGAGAAGTTCAGGGCGGGAGGGGAGGCGAGCCGAGGCGGAGGAGAGGGAAGCGCGAGGG
AGACATCGCCCGACTGCGATGACACCAGGCGCCGACGCCGTCATCATCGCCGTAGCAGAAGCCAGCCGGAGCGAGCAGGC
CAGGAGCAGGAGGAGCGGCAGCCGGAGAGCAGCCGAGGCGCCGTCCGTCCCGTCGTCCTACGTCGTCTGGGAGAAGGAGC
GGTAATTAAGTTCATCGAGAGAGAGCGGAGCGGACGTCGCGAGCATGGAGGTGGAGGCCGCGAGGTGCGAGTGCTGCGGC
TTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAGTACATGGGCCGCTGGGTCTGCGGGCTCTGCGC
GGCTGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCGCGCCATCACCACGGCCGAGGCGCTCGACCGGC
ACGGCGCTTTCGCGAGGGAGGCGCCGCGTGCGCCCGGGAAGAAGGCGTCCGAGGAGCTCGTGGCCGCCGTGTCGCGCCTG
CTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCACCCGCCGCGCCGCAGGGGCGCAAGGTGGCGGCAGGCCCCCGGTGCAC
GGACGCTGACGACGCCTGATCGATCGCCTAGCCGGAGGCGAAGGATAGCTAGC----TCGTGGTGGGT--TGTTC-----
GCCAATGATTGGGCAAAGACGTCAGGAATAATACGTACTTG----GGGGGCATGTGCCTTGTGTGGCTTGCCTGCCGTCC
TGAGGAATGAATAATTTGCGTCCTAGCTTATGATTGCTCGAGACAGGAGCGATCAAGCTCCGTATGATCGAGCATGAAGT
TATTACGTAATGTGCTTCGTAGCATTTGTAGTAGTATCCGGTTGTGTTGAGTA-------TTAGCTCAGGCTTCGGCTAC
GCATTGTAGTCACTCTGTACAAAAGCATTGTACTGGAGTTATGCAGGCTTCTTGTAAGTTACTCAGATGGAAGGACATGT
AAAGTAGTGCTCATTGTAGTAATCTACAGTAGT-----------------------------------------------
--------------------------------------GTATATGTATCTCATTGTATTTACA-------------CATG
TTTGTATTGCCATGTCCTCACATGGATGCAAGTAA---------------------------------------------
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-----TTAGGCTTGATTTTCAACAGAGTCAGAAAATAAAGCGGTTTTGCTATATAACAGGTGCCTGATTATTATTTTTAG
CTCTCACCCGAATTTGCAACCATCATTCACATAGTTCATGATTCGTACTTGGGGTCTGTTTGGGTTATAGTTGACTGGGT
TATAGTTGACTGATGTAACTTTTGTTTTCAGTCGATTTTGTTCAGCGGAAAGGTTTCAGTCCGTTAGTCTTAGGCTAGTG
GGTTATGCGTCGGTCCGGTAGTAGTCCATTTGTTTTTCAGTTGATGCTTGTTGTTGCTTGGGTCACTAGGGTTCTGTGTT
CGCAAGATTGTCGAAGTGCTTCTTGTCGTACGCACGAAATAAATGAGACTCAATTCATTTTCGTCATGTTTGTGTATGCA
CTTCGGAGGCGATAACATTGGCATGAGTAAGACACTTAGGGGCTGTTCGGCGGCCCACCCGCTCCGCGGTATATAAGAAT
CTGCAGAGTACCGTTTCTCTCGCTCCACACTTTTTAACTGGAACTTCGTCGACTCCGGGAGCGGCCTCG
>chr7A_3
--AAAAAGAAGTAAAGAAAAGTAGGCTTATGATTGGAGGCACCAACCCAGCCCAAGACAAAGCCGAGGAGGCAGCGGCGA
CAAAAACACTCCTGTCGCGATAAACCGG-AGAGAGCGACGCGTCAGGCGCATGAAAACAGCA-GC-GGGGCCCAGCAACA
GCGACGGCCCATCCGAACCCGCCACCAAATCCACCCGACCCCTGGGCACGGCGAGCAGCCCGCGCGGCCCACCGTCGCCA
GCTGTCAGTACTCGCAGACCACGCATTCAAAAGGCCGGGCGCCCGTCCAGCTCAGCCCCCCGACGTGGACCTCCCCCTAG
CAGCCCCA------------------------------------------------------------------------
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------------------------------------CGCTACGGGCTACGGCCCGTACAGGAGCCACCACCTCCCACCGA
CG---------CGCGGGGCCAGCGGGGCAAGACGTGGCCACATGCTCCACGCCGCTGGCCGTGCATAAATACCACCTGGC
TGCCACCGCATGCCCCGGCGCGGAGAAGTCCAGGGCGGGAGGGGAGGCGAGCCGAGGCGGAGCAGAGGGAAGCGCGAGGG
AGACGTCGCCCGACTGCGATGACACCAGGCGCCGACGCCGTCATCATCGCCGTAGCAGAAGCGAGCCGGAGCGAGCAGGC
CAGGA---------GCGGCGGCCGGAGCGCGGCCGAGGCGCCGTCCGTCCCGTCGTCCTACGTCGTCTGGGAGAAGGAGC
GGTAATTGGTTGGTTCGACCGAGCGA------------GCGAGCATGGAGGTGGAGGCGGTGAGGTGCGAGTGCTGCGGC
TTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAGTACATGGGCCGCTGGGTCTGCGGGCTCTGCGC
GGAGGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCGCGCCATCACCACGGCCGAGGCGCTCGACCGGC
ACGGCGCGTTCGCGCGGGAGGCGCCGCGCGCGCCCGGGAAGAAGGCGTCCGAGGAGCTCGTGGCGGCCGTGTCGCGCCTG
CTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCCCCCGCCGCGCCGCAGGGGCGCAAGGTGGCCGCGGGGCCCCGGTGCAC
GGACGCCGAGGATGCGTGATCGATCGCCCGGCCGGAGGCGAAGGATAGCTAGCCAGCTCGTGGTGGTTGCTGTTGCTGTT
GCCAATGATTGGGCAAAGGCGTCAAGAATAATACGTACTTCGGGCGGGGGCATGTGCCTTGCGTGGCTTGGCTGCCGTCC
TGAAGAATGAATAATTTGCGTCCTAGCTCATGATTGCTCGAGACAGGAGCCGTCAAGCTCCGTATGATCCAGCATGAAGT
TATTACGTAAT-------GTAGCATTTGTAGTAGTATCCGGTTGTGTTGAGTAAGTAGTATTAGCTCAGGCTTCGGCTAC
GCATTGTAGTCACTCTGTACAAAAGTATTGTACTGGAGTTATGCAGGCTTCTTGTGAGGTTTTTAGACGGGAGAGCATGT
AAAGTAGTATTGCCTTAATTGTCTACTCCCTCCGTCTCATAATATAAGAACGTTTTTTATACTAGTGTAGTGTTAAAAAC
GTTCTTATATTTTGGGACAGAGGAAGTAGTAATCAAGCGTATATGTATCTCATTGTATTTACATATATCATATAGGCATG
TCTGTATCGCCATGTCCTCGCATGGTTGCAAGCAATTAGGCTTGTGCCTACGGTGACTTTGTAAATTTCAAAATAATATG
CCGGATCGATCTTTCGGAGGTGCTCATAGGAGTTGGGTGTACGCAGTGGCGGAGCCAGCCAGCTGAAGGAGCCGGGGCAA
AGTCTTTACATATCGATGTTGCCCAACATTTGCCCAAGTAATTAGTAATGCTAATCATGGTTTCTTTGTATTGTTTAGTG
AAGAATGGCTGGACCAGCTCGGGCAGCTGCCCCAGGTCGCCGAGAGCTAGCTCCGCCACTAGGTGTACGTATGTGGGTTT
ATAGAGGTGAGTGTATGCGTGTGTATATGAGCGGTTGCGTCTGTATTATGTTTAAAAAAAAGTAATTATTCCCGAAAAAA
AGTATTTAGGCTTGATTTCCAACAGTAAAAAAAGAAACGGTTTC-TTGCTATATAACAGGGGTATGAAAAAAAATACTAG
CTCTCACTGGAATCTGCAACCATCATTCACATAGTTCGTGATTCGTACTTGGGATCTGTTTGGGCCG-------------
--TAGTTGACTGACGTAACTTTTGTTTTCAGTCGATTTTGTTCGGCAAAAAGGCTTCAGCCCGTTAGTCTTAGGCTAGTG
GGTTATGCGTCAGTCCGGTAGTAGTCTATTTGTTTTTCTGTTGATGCTTGTTGTTGCTTGGGTCACTA------------
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>chr7D_78
------------------------------------------------------------------------------GA
CAAAAACACTCCTGTCGCGATAAAAACCAAGAGAGCGACGTGTCAGGCTCATGAAAACAGCA-GGTGGGCCCCAGCAACA
GCGACGGCCCATCCGAACCCGC-ACCAAATCCACCCGACCCCTGGGCACGGCGAGCAGCCCGCGCGGCCCACCATCGCCA
GCTGTCAGTACTCACAGACCACGCATTCAAAAGGCCCGGCGCCCGTCCAGCTCAGCCCCCCGACGTGGACCTCCATCTAG
CAGCCCCA------------------------------------------------------------------------
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------------------------------------CGCTACGGGCCACGGCCCGTACAGGAG-----------------
------------GCGGGGCCAGCTAGGCAAGACGTGGCCACATGCTCCACGGCGCTGGCCGTGCATAAATACCACCTGGC
TGCCACCGCATGTCCCGGCGCGGAGAAGTCCAGGGCGGGAGGGGAGGCGAGCCGAGGCGGAGGAGAGGGAAGCGCGAGGG
AGACGTCGCCTGACTGCGATGACACCGGGCGCCGACGCCGTCATCATCGCCGTAGCAGCAGCCAGCCGGAGCGAGCAGGC
CAGGA---------------GCCGGAGAGCGGCCGAGGCGCCGTCCGTCCCGTCGTCCTACGTCGTCTGGGAGAAGGAGC
GGTAACTGGTTCGATATATTGGTCGATG----------GCGAGCATGGAGGTTGAGGCTGCGAGGTGCGAGTGCTGCGGC
TTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAGTACATGGGCCGCTGGGTCTGCGGGCTCTGCGC
GGCGGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCGCGCCATCACCACGGCCGAGGCGCTCGACCGGC
ACGGCGCGTTCGCGCGGGAGGCGCCGCGCGCGCCCGGGAAGAAGGCGTCCGAGGAGCTCGTGGCCGCCGTCTCGCGCCTG
CTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCCCCCGCCGCGCCGCAGGGGCGCAAGGTGGCCGCGGGGCCCAGGTGCAC
GGACGCCGAGGATGATTGATCGAGGA-----------------------TAGCTAGCTCGTGGTGGGT--TGTTGCTGTT
GCCAATGATTGGGCAAAGGCGTCAAGAATAATAC----TTG----GGGGGCATGTGCCTTGTGCGGCTTGCCTGCCGTCC
TGAAGAATGAATAATTTGCGTCCTAGCTGATGATTGCTCGAGACAGGAGCCATCAAGCTCCGTATGATCGAGCATGAAGT
TATCACGTAATGTACTACGTAGCATTTGTAGTAGTATCCGGTTGTGTTGAGTA-------TTAGCTCAGGCTTCGGCTAC
GCATTGTAGTCACTCTGTACAAAAGCATTGTACTGGGGTTATGCAGGCTTCTTGTAAGGTTTTCAGACGGACATGTAA--
AAAGTAGTATTCATTGCCTTAATCTA------------------------------------------------------
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>SNPs
SS--------------------S-S-----------S------------S-----------S--------S--SS-----
-------------------------S--S----------------------S----------S-----------------
---------------------------------------------------------------------------S----
--------------------------------------------SS----------------------------------
--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------------------S----------S-S-S
-SSSSSSSSSS------------------------------------------------S--------------------
------------------S----------S--------------------------------------------------
----S---------------------------------------------------------------------------
-----SSSSSSSSS-----S----------S-------------------------------------------------
-------SSS-SS-----SS---S-SS-SSSSSSSSSS--------------------S---------------------
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---S----------------------------------------------------------------------------
-------S------S-------------S---------------------------------------------------
--------------------------------S-----------------------------S--S--S-----------
------S--S--S--S------------SS--------------------------------------------S-----
------------------S-----S-------------------------------------------------------
---S------------------------S---------------------S-----------------------------
-------------S--S---------------------------------------------------------------
----------------------------------------------------------S-SS-----S-----SS-----
--------SS------S-S-------SSSSSSS-----------------------------------------------
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-S-----S-----------S-----S------S-----------------------------------------------
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------------------S------SSSS-S--S-S-SS-SSSSS---------------S-SS---SS-SS-S-SS---
-------SS----S-----------------------S---------------S----------SSSSSSSSSSSSSSSS
SS-----------S-----------------------------S--SS-----S-----S--------------------
-----------S--------------S-----------S-----------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_336
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----------------------------------------------------------------------------CTAG
CATCCCCACGCTACTG----------------------------------------------------------------
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>reverse_2655
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--------------AGTGCTTCTTGTCGTACGCA----------------------------------------------
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