>input_sequence_82222
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---------------------------------------------------------------ATGGCACCCCAGCAACA
GCTCCTCCTCCTGCTCCTCCTCCTGGCCACGCCGTTGCCGCGGCCGGCCGCCGCCGCCGACGGGGGCGCTGGGCAACCGC
CAATGGTGCATCCATTCTTCTACTACTCTCCTCCGCCGCCGTCGGCGCTTCCTCTCACCGTCCCGCCGCCGACGCCGA--
----CACCGTGCAGCTGCGGGCAGATGCTGCCGCCCACCGCTGCTTGCAACTGCGGGAGGATGCCGCCGCCTGGGATCGA
CCGCCGCAGCCCGCCGGCCGGGCGCCACGGGCTCCATTCCGGGTCCCACTCGCAGACCGGAGTGCAGCTCCATCCCCGGA
TGCTCTGCGCTGTCGTCGCCGCACTTCTCCTATGGTGGTGCTAG------------------------------------
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>chr7A_1_TraesCS7A01G406700
GAAAGTCATTTTCAAGTGGGTAGTCAAGTGTTCCTAAAGTTACAGCCAGATGTGCAATTCTCTATGGTTAGGAGAGCTAA
TCATAAAATTCTCTTTTAAATACTGTGGGGCCTATGTCATCACTGAAAAGATTGAAGAGCTAGCTTGTTGTTTGAATCTT
CCACCTTCGAGTGGAATTCACCCAATTATCCATGTATCTCAACTAAAGCA-TGTGTACTTTCCCACCATCAGGTACAATC
AGCTCTTCCTCCTCCTGACACTCTTCTTGAGGTTCATGTCAAAATTCTGCAGCACCGTGTTCCTCAACGAGGACATCGTA
CCATTCTGCAAGTGATCGCTCAATGGAGAGGCACGAATGCTTCCGTTGCTACCTGGGAAGATTTAAATTATCTTCGCCAG
CAGCTCCCTCGTC-AGTGGCTTGGGGACAAGATGGTTCTGAAGGAGGGGGGGTTGTCAAGGGCGCCAGGGTTAGCGGGAA
TCCAAATTCAAGCAATGGGCCAGCGGCCCGAC-CCAGAAAAGAGACGCGACTTCCAGCCGGCTTGCAGGTCGTCAATTGG
TCTTTGACCTAGTAACGTTTTTCCAC-ATATATGGTTACCTAGCCGTAGCGTTCGAATGACGTAAAAAAAGCTGCAGCAA
TTGAAACTTGGCGAGGAAGAAGTGGCCATTTGGCCGGCTTGTAATTTTGAATTGTAACGAGGTGAGGAAGGTTTGGTGGA
ATTCCTGTGCAATAAACCCTACTTCGGCCATGGAATTCGAACTTCGTGGTCTAGTTCGTGCTGCAAATGAGGA-------
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--------------------------------------------------------------------TTTTGCCCTC--
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---------------CTCCTCTTCCTTTTTTC--CATCCGACAGTGAGCTTGAAAATACTTGAAAGCTTTGTCTGGTGCC
AGACCAGTAACAGTGTACCACGAGGCACCCA-----TGCAGTGCACGGCTTAAGTTTCACTATCTGCCGACTGCCGTGTT
AAAAAAATAGTTTCACCATCTGCTTAGCCACGCACTGACGCACCCATCTCGCCCTCAGCTCTCATGGCACCCCAGCAACA
GCTCCTCCTCCTGCTCCTCCTCCTGGCCACGCCGTTGCCGCGGCCGGCCGCCGCCGCCGACGGGGGCGCTGGGCAACCGC
CAATGGTGCATCCATTCTTCTACTACTCTCCTCCGCCGCCGTCGGCGCTTCCTCTCACCGTCCCGCCGCCGACGCCGA--
----CACCGTGCAGCTGCGGGCAGATGCTGCCGCCCACCGCTGCTTGCAACTGCGGGAGGATGCCGCCGCCTGGGATCGA
CCGCCGCAGCCCGCCGGCCGGGCGCCACGGGCTCCATTCCGGGTCCCACTCGCAGACCGGAGTGCAGCTCCATCCCCGGA
TGCTCTGCGCTGTCGTCGCCGCACTTCTCCTATGGTGGTGCTAGTCAGCCGCTGCTGTGCCACTCAGATCTGTATGTGC-
-----------TATGCCATTACTACTTGCATGCTTGTTTAGGACAGGGGAATTTCAT-AGATTTCTGGGAGAATTATATT
GTAA---GTTGTTGCAGTGCACACTCAGTAATTCCGCA--GGGTTCGATTAATCTG---GCCATATGTATGGATTCGGTT
GTTGCAATCCGCATTTGATGGAAGTTGATGACTGAAGAGGGTGTTGATGGCATGTATGCTCTGTGTCAACTTTGTGTTTG
TAAAAGGTGGCCTGCATTTTCGCAT--GCAAATGCATGGTTACAACTTGTTTGCCTACTTTTCCTTTGTATGAAGAACAC
CACTAGACCACCCGGCCACGCCGGCACCCGCACGGATCTTAGAGACAGAGAGATTGTTTGGCGGAAGCTTGGGGCTTCAA
TGGTGTTAAAAGCTTGGGGTCTTGTT--------CTGGTTGTAATTTTACTGCTGTATTTCCGTCTCGATGTGTTCTTGC
TGTGCCTGTAAAATGCACTGTTAAGAGTATCTTTTAAGATTGTAATTCATGTTAAGTCTTCCCCGAAGGTGGTGGGAGTA
C-----------------------CTTGCTAAACCGTGACACTGTGTGCCTTGCGGAGTG-AATGAAT--GAAACATCTG
ATCTGATGTGCCATATGCAGGCCAGGCACTGCTTGAACGTGCGGCTGCCATCGGTCGATCTCGTACCGATAAGGT----G
TCTACAAGGAAGCGGC-TAGAAGCTGGTCCTCTCCTCCTCCTCCTCCTCC---CTTCCCCACCTCACCGACTCCCACCCA
TCCATCCATGGCTCAGCTCCTCCCTCTCTCCTCCGCTGCTCCCAGCTTCCGTCTCGCCGCGACGCCAGGTAGCCATGCTC
AGTCGCCTCTCTCTTTCTCTGCTCTCGCTTGCCAGGGCAGATTCCTGGCAAAAAAAAAATCCTTTTATCCGCGTGCAGGA
AATTGAAGTAGCGTCGTAAAACCTCGTGCCCTCTTGAGCTAGCTCCCTCTCCCTGACTAGCTTCGCGTC
>chr7B_1
GAAAGTCATTTTCAAGTGGGTGATCAAGTGTTCTTGAAGTTGCAACCATTTGTGCAATCCTCTGTGGTTAGGACAGCTAA
TCACAAA-TTCTCTTTTAAGTACTGTGGGGCCTATGTCATCACTGAAAAGATTGAAGAGCTAGCTTATTGTCTGAATCTT
CCACCTTCAAGCAGAATTCTCCCAATTATCCATGTATCTCAACTAAAGCAATGTGTACCTTCCCACCATGAGGTACAATC
AGCTCTTCCTCCTCCTAATGCTCTTCTTCAGGTTCATGTCAAAATTCTGCAGCATCGTGTTCGTCAGTGATGACATCGTA
CCATCCTGCAAGTGCTCGTTCAATGGAGTGGCACGAATGCTTCTGTTGCTACCTGGGAAGATTTGGACTATCTTCGTCCA
CAGCTCCCTCGATTAGTGGCTTGGGGACAAGCCGGTTCTGAAGGAGGAGGGATTGCCAAGGGTGCTAGTGTTAGCCGGAA
TCCAAATCCAAGCAATGGGTTGGTGCCTCGACACCAGAAAAGAGGTGCGACTTCCCACCGGCTTGCAGGTCGTGAATTGG
TCCGTGACCTGGTAACATTTTCCATGTATATATAGTTACTAGC------CGTTTGAATGACGTAAAAAAGCCGT-AGCAT
TTGAAACTTGGCGAGGAAGAAATGGCCATTTGGCTAGCTTGTAATTTTGAATTGTATAGAGGTGAGGGAGGTTGGGTGGA
ATTCCTGTGCAACAAACCTTAGAGCAACTCTAGTAGACCCTGTAAAACCGCGACCCACATAAGGCGTTTACAGTTCGACG
AAGAACTGTTTTGCGGGTCGAAATCGTGCACGGCAGAGTAGAACCCGTATATGAAACTGTATAATTTGAAAAAAAAACTT
TCGCAGGAGAAATTGCAACCACACTAGTTCATCGCATACTACATGACCATTCATAGTTCATCATCACATACTACATTATC
ATACATACTACATTCTACTACTACTACTAGAGGGGTGAGGATCTCGCAGAGCGAGGCCGAGGTTGATATACCATGGACGA
GCTCGCGGCCGTTGGAGCTGACGAGATCGATGAACTTCTCCCTCTGCTCCTCGCGGGTGCGCTGCCAGTCGGCGTCCTCG
CCCTTCGCGGCAAGGTTGACCGCGACCGCCTGCTTGAGGATGAGGTCTTCGAGCTCCTCACCGTGGCGCCGGCGCTCCGC
CTCCTCGCCCAAGCCCCGTTCGGAAATGGCAACCGCGACCACGTCGAAATCTGCCACAAAAATCTTCGGGCCCGACGACC
CCTCGGCGCTCGATCTCCTCCGGCTCCTACTTGACGGCGACGACCTCGATCTCCTCCGGCTCCTCCGACCACTCCCTCTT
CACGGGGAGAAGCCTCGCGCCGGAAGAGGAAGAGCTTGTGGCGTGGGAAGATCTGCTGCGGAGGACGAGCCCGCAGCCGA
GGAGGGCGTACGCCCGTGCCGACGGTCGTACTCCTCCGTCTCGCGAACGAGGAAGCTCAGCGGGAGCTCGAGGCCCTTGT
TCGTCCACTTCCTCGCCGCGCGCTTCCTCGCGCCGTCCGAGCGATCACGCCGCTCGCGCTCGGGGTAGCCGCCCCCACCG
GAGCTGCCACCGAAGCTGCGGCCGGAGTTCCACATGGCGGCTGGAGGCGGAAGGGGCCCACCGGTGGCGAGAAATGTGAG
GAGCGGAGTGGGGAATTGCGGCGAGATGTGGCGGCAGGGGGATAGGATTTCGACCCGTATCTACCCCGCGAGCCCGTAGA
TATACTGCTTCGGGGGTGGTTTGCGGGCCGCGATAAAAAAAATTACGGGCAGAGCCCGTATACTCGCCGGAATATTTTAG
GGGGGTGGGACATTGCCGTTCTTCCTT-TTTTTTCATCCGACAGTGAGCTTGAAAAAACTTCAAAGCTTTGTCTGGTGCC
AGACCAGTAACAGTGTAGCACGAGGCACCCA-----TG-----CACGGCTTAAGTTTCACCATCTGCCGACTGCCGTGTT
AAAAAAACAGTTTCACCATCTGCTTAGCCACGCACTGACGCACGCATCTCGCCCTCAGCTCTCATGGCACCCCAGCAGCA
GCTCCTCCTGCTGCTCCTCCTCCTGGCCACGCCGTTGCCGCGGCCGGCCGCCGCCGACGACGGGGCCGCTGGGCAACCGC
CACTGGTGCATCCGTTCTTCTACTACTCTCCTCCGCCGCCGTCGGCGCTTCCTCTCACCGTCCCGCCGCCGACGCCGACG
CCGACACCGTGCAGCTGCGGGCCGATGCAGTCGCCCACCACTGCTTGCAACTGCGGGAGGATGCCGCCGCCTGGGATCGA
CCGCCGCAGCCCGCCGGCCGGGCGCCACGGGCTCCATTCCGGGTCCCACGCGCAGACCGGAGTGCAGCTCCATCCCCGGA
TGCTCTGCGCTGTCGCCGCCGCACTTCTCCTATGGTGGTGCTAGTCAGTCGCTGCTGTGCCACTCAGATCTGTATGTGCG
TACTACTGTGCTATGCCATTACTACTTGCATGCTTATTTAGGACAGGGGAATTCCATCAGATTTCCGCGAGGATTATATT
GTAA---GTTCTTGCAGTG--CACTCAGAAATTCCGAT--GGGTTCGATTAATCTCTCTGCCATATGTATGGATTCGGTT
GTTGCAATCCGCATTTGATGGAAGTTGATGACTGAAGAGGGTGTTC---GCATGTATGCTCTGTGT--------------
------------------------------------------CAACTTGTTTGCCTACTTTTCCTTTGTATGAAGAACAC
CATTAGACCACCCGGCCAGGCAGGCGTCGTCGCGGC--------------------------------------------
---------------GGAGTCTTGTT--------CTGGTTGTAACTTTACTTCTGTATTTCAGTTTCGATGTGTTCTTGC
TCTGCCTGTAAAATGCACTGTTAAGAGTATCAGTAAAGATTG-AATTCATGTTAAGGCTTCGCCGAAGGTGGTGGAATTA
AGCCGAAGCCGAGGTGTGACTTTTCTTGCTAGACGGTGAGACTGTGTGCCCTGCCGAGAGTAATGAAT--GAAAT-----
ATCTTATGTGCCATATGCAAGCCAGGCACTGCTTGAACGTGCGGCTCCCATCGGTCGATCTCGTATCGATAAGGT----G
TCTACAAGGAAGCGGC-TAGAAGCTGCTCCTCTCCTCCCCCTCCTCCTCC---CTTCCCCACCTCACCGACTACCAGCCA
TTCATCCATGGCTCAGCTCCTCCCTCTCTCCTCCGCTGCTCCCAGCTTCCGTCTCGCCGCGACGCCAGGTAGCCATGCTC
AGTCGCCTCTCTCCTTCTCTGCTCTCGCTTGCCAGTGCAGATTCCTGGCACAAAAATA---CTTTTATCCGCGTGCAGGA
AATTGAAGTAGCGTCGTAAAACGCCGTGCCTTCTTGAGCTAGCTCCCTCTCCCTGACTACCTT------
>chr7D_678
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-----------------------------------------TAATTTTGAATTGTATAGAGGTGAGGGAGGTTGGGTGGA
ATTCCTGTGCAATAAACCCTACTTCGGCCATG-AATTCGAGCTTCGTGGTCTAGTTTGTGCTCCAAATGAGGACG-----
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----------------------------------------------------------GCGCTGACAGTTTTGCCCTC--
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---------------CCCTTCTTCCTT-TTTC--CATCCGACAGTGAGCTTGAAAAAACTTGAAAGCTTTCTCTGGTGCC
AGACCAGTAACAGTGTAGCACGAGGCACCCATGCAGTG-----CACGGCTTAAGTTTCACCACCTGCCGACTGCCGTGTT
AAAAAAATAGTTTCACCATCTGCTTAGCCACGCACTGACGCACGCATCTCGCCCTCAGCTCTCATGGCACCCCAGCAGCA
ACTCCTCCTGCTGCTCCTCCTCCTGGCCACGCCGTTGCCGCGGCCGGCCGCCGCCGCCGACGGGGCCGCTGGGCAACCGC
CACTGGTGCATCCGTTCTTCTACTACTCTCCGCCGCCGCCGTCGGCGCTTCCTCTCACCGTCCCGCCGCCGA------CG
CCGACACCGTGCAGCTGCGGGCAGATGCCGCCGCCCACGGCTGCTTGCAACTGCGGGAGGATGCCGCCGCCTGGGATCGG
CCGCCGCAGCCCGCCGGCCGGGCGCCAGGGGCTCCATTCCGGGTCCCACGCGCAGACCGGAGTGCAGCTCCATCCCCGGA
TGCTCTGCGCTGTCGCCGCCGCACTTCTTCTATGGTGGTGTTAGCCACTCGCTGCTGTGCCACTCAGATCTGTATGTGCG
TACTACTGTGCTATGCCATTACTACTTGCATGTTTGTTTAGGACAGGGGAATTTCAT-AGATTTCTGCGAGGATTATATT
GTACTATGTTCTTGCAGTG--CACTCA--AATTCCGATGTGGGTTCGATTAATCTCTCCGCCATATGTATGGATTCGGTT
GTTGCAATCCGCATTTGATGTAATTTGATGACTGAAGAGGGTGTTGATGGCATGTATGCTCTGTATCAACTTTGTGTTTG
TAAAAGGTGGCCTGCATTTTCGCATGCGCAAATGCATGGTTACAACTTGTTTGCCTACTTTTCCTTTGTATGAAGAACAC
CACTAGAGCACCCGGACACGCTGGCATCCGCCCGGTTCTTGGAGACAGAGAGATTGTTTGGCGGAAGCTTGAGGCTTCAA
TGGTGTTATAAGCTTGGGGTCTTGTTCTGGTTCACTGGTTGTAACTTTACTGCTGTATTTCAGTCTGGATGTGTTCTTGC
CGTGCCTGTAAAATGTACTGTTAACATTGT--------------ATTAATGTTAAGCCCTGGCGGAAGGTGGTGGAATTA
AGCCGAGT------------------------------------TGTGCCTTTCCGATTG-AATGAAGGGGAAAT-----
ATCTGATGTGCTATATGCAGGCCAGGCACTGCTTGAACGTGCGGCTCCCGTCGGTCGACCTCGTATCGATAAGGTGTGTG
TCTACAAGGAAGTGGCTTAGAAGCTGCTCCTCTCCTCCCCCTCCTCCTCCTCCCTTCCCCACCTCACCGACTACCAGCCA
TCCAGCCATGGCTCAGCTCCTCCCTCTTTCCTCCGCTGCTCCCAGCTTCCGTCTCGCCGCGACGCCAGGTAGCCATACTC
ACTCGCCTCTCCCTTTCTCTGCTCTCGCTTGCCAGGGCAGATTCCTGGCACAAA---AATCCTTTTACCCGCGTGTTGGA
AACTGAAGTAGCGTCGTAAAACCCCGTGCCTTCTTGAGCTAGCTCCCTCTCCCTAACTAGCTT------
>SNPs
---------------------SS----------S-S-----S--S---SS--------S----S---------S------
---S---S-----------S----------------------------------------------S----S--------
--------S--SS------S--------------------------------------S----------S----------
----------------S-SS--------S-------------------------S-------S---SS--S---------
----S---------S---S---------S--------------S--------------------SS-S--------S-SS
-----------SS------------------SS--------------S---S---S------S--S--S------S----
-------S-----------SSS-S-S-S----------------SS---------SS----------------S------
--SS------S-----S----S-SSS-------S-----SSSSSSSSSS----S---------------SS-SSS----S
---------------------S------------SS--------------------SS---------S-----S------
----------------------------------------S---------------S-----------------------
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----------------S-S--------S----------------------------S-----------------------
-----------------S--------------------SSSSS-----------------S-------------------
-------------------------------------------S---------------------------------S--
---------S-------------------------------------------------------S--------------
--S----------S------------------------------------------------------------------
----------------------------S---------------------------------------------------
-------------------------------------------------S------------------------------
---------------S--------------------------------S-------------------------------
-------------------------------------------------------------------S---S--------
----------S--------SS-------S-------SS-----------------S------------------------
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---------------------S----S----S---S----S------------------------------S--------
--------S-----------------------------------S----------------S------------------
-------------------------------SS-S-------S-------------S----S-------------S-S--
S------------------------------S--S----S--------------S-------------------SSSSSS
----------------------------------------------S------------------S--------------
--------------------------S-----------S---------------------------------S---S---
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--------------------------------------------------S-----S-----------------------
-----------------------S------S--------------------------------SSSSSS
>forward_1868
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--------TGCCCTCCTCCTCTTCCTTT----------------------------------------------------
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>reverse_2827
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--------------------------CCCGCACGGATCTTAGAGAC----------------------------------
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