>input_sequence_82202
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---------------------------------------------------------ATGGGGGCGAGGCAGCGCGGCGA
GAGAGGGGGTATC---TCGACGTCCAAAAGGTCGAGGCTGGCGGCGGCGGCGGACGCGGCGTCGTGGTGCCTCGCGCTGG
CGGCGCTGGCGGCGCTGCTGCTGGTGTGCTCGCTCGGGGAGACGTCGGAGGCCGCGGTGGTGGTGCGGGGCGCGTCGCTG
TCGGCGCGGTGGCGGCCGTGCGAGGAGGTCTACGTGGTGGCGGAGGGGGAGACGCTGCACGGCATCAGCGACCGCTGCGG
CGACCCCTACATCCTGGAGCGCAACCCGCACGTCCACGACCCCGACGACGTCTTCCTCGGCCTCGTCCTCAGGATCACGC
CCTCCCTCCATCTTGAA--GCCGTCCGTCCCCGCTAG-------------------------------------------
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>chr5A_1_TraesCS5A01G521900
CTAGTTTGTGGTTCTTGTGCCACCCCAATTCCATGAGCGTGTGATATCAGTAAGTTGCCGTTCTTTTGTCGTTGCATGGC
AGCACCGAACCGAATCCAACAAGTTGCCAGGGG-ATGTATGTTTGAGGTTTGTAGCTTCGTTGGACCATGGCG-AACTGA
TGAGTTTCATTTTTTGA-TCTCGATCATGGGAGTCGGTTTTCTCAAGAAAGAAGATCATGGGAGTTGGTAACTGGATCGA
AACAAATTCCATGCTAGTTATCTAAATGCAAATT--CATCACTGCCCTGGCAACAGACTGCTCCTCTATTATATCATTAT
ATTAACTTCCATACCAGTTATTGAAAAGCAAATTCATCACTTGAATTTGCTTTACCTTTGCGTTCTGAATGTGAATCTGG
ACCTTC---TTTTCCAGCAACTTGGTTGTAGGTC----------------------------------------------
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---------------------------------ACTCTCTTTTGTGAATTGGGCCGTCTCGGGCGAGCGAGACAACCTCT
ACAGGGCAGCGAAAGGGCCTTCGCACCGTGTAATGGCAAGGCAAAAGGGGATGCTAGTTGAAGCATTATTGAATCCACTA
CCACTAGCGCGGCATTGTGCGCACGGCAG--------TCACCGCTTTGTCTACAGAGCGAGCGCAAGTGTTCCTCAAATC
GCGCAGCAACTCCCTTTTGAGGTCACTCGCTTTGCACTACGAAAACGTCGGAG-----------------CAGTGCTGAG
AATCACTCAATCATCTTCAGATAAGGTCGTACGTGCACTGACTACATCACCCAATATATGAAACCAACGGGAAAAAAAC-
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--------------------------------------------------AGTAGAACAAGCTTGCCGTTTCTGCATGAC
AGGGGGA----CCTTCTTGGGCTTATCGCCCAACGTATACCTGCGCTCCAACCGTCGGTCGGGTCGGCCCCCCCACGCAC
TCACTACTCCCTGCTCTGCTCTGC-CTCTGCACGTAT-AAAGCCCGACCCAACGGAGGCAACGAAACACCA--GCTCGCA
CTCGCTTGACACTAGCGAACCATCACCGGG-AAGCCACGATCGAGCGCG-----CTCATGGGGGCGAGGCAGCGCGGCGA
GAGAGGGGGTATC---TCGACGTCCAAAAGGTCGAGGCTGGCGGCGGCGGCGGACGCGGCGTCGTGGTGCCTCGCGCTGG
CGGCGCTGGCGGCGCTGCTGCTGGTGTGCTCGCTCGGGGAGACGTCGGAGGCCGCGGTGGTGGTGCGGGGCGCGTCGCTG
TCGGCGCGGTGGCGGCCGTGCGAGGAGGTCTACGTGGTGGCGGAGGGGGAGACGCTGCACGGCATCAGCGACCGCTGCGG
CGACCCCTACATCCTGGAGCGCAACCCGCACGTCCACGACCCCGACGACGTCTTCCTCGGCCTCGTCCTCAGGATCACGC
CCTCCCTCCATCTTGAA--GCCGTCCGTCCCCGCTAG---CCCGTAGGTAGATCAAGAAAGAAGATGAGTTTGATTCTTC
TGCAGAATCATTCCGGTTCGCTCTGAAGAACTCTGATT---TACGAGTAACCTCGCTAGTCTTAGTGGTAGAGGACAGAG
TGTCAGAGTGTCA------------GCCTTGTTTCCTTGTG---ATTCTCTCTTATACTTCGTGCGTGGAAAATTGGCTG
AATCGTTGGGCCGTGGAGCAGAGGCGGTGTCAGGTATGTCCGGATGCGCCGCGCCGCTTATTAGGGCTAGCGCCCATTAG
AGCAACTAGTTAACGATTACTTTTTCGAGAGCCTCCCAACAATCAGTGGGTTGAGAGCGTGTCTCTCGACGCTCTGGGTG
TTTTCTTTTGGATTTTGTTTTTTCTTTAATTTTTTCACACGTGTTTTCGGCTTTTTAAATATATTTTTTTCGGTTTTATG
GTTTTCCATCGGTCTTTCTTAGATTTTGGATGAAAAAAAACTTTGGGATTTTTTTTGCGAGAAAAAACTTGTTTTTTTCT
TCTGTGAGAGGCACGACTCAGAAACGAAAAAAACGTGTTTTCTTTTTTCTTTTGCGAGAGACACGATTTTGACGAAAACA
ATTTAAGATTTGGACGCACGGTTTAAGAGATAAAATATTTTGAATAAACAGATATATGAAGAAAACTCACAGAAATGATC
TTTGAAAGAAGTACTAATCAATTAGTGATTTTGATATATAGCTTGTCTATAAAAGGGTAACTACCGATTGTTCGACCTAC
CAAATAGTTTTGCCTTTCGCTAGGGTTTTTGGCTCGCTCGCCGCCACCACACCGGCGTTGAGATTTTCCTAATTTTCGCT
TTAGCATCTACTTCGGCCCTCCTCACCATCTCACCTAGTTATCGGCCAACGTGGAATACCGTCCGCTCAACGCCGTCCGC
CTGCAACAACGGCCAACGTGGAATACCCACCATGCCGTGCACGCTGTCACATGTCCTCATCATGCCCTGTTGCTCGTCAT
ACACGGCATTGCCAATTT
>chr4D_1
CTAGCTTGTGGTTCTTGTGCCACCCCAATTCCATGCGCGCGTTTT---AGTAAGTTGCCATCCTTTTGTCGTTGCATGGC
AGCACCGATCCGAATCCAACAAGTGGCCGGGGGCATGTATGTTTGAGATTTCCAGCTTCGTTGGATCATGGCCCAACTGA
TGAGTTTCATTTTGTTTCTCTTGATCATGT---------------------------ATGAGAGTCGGTAACTGAATCGA
AATAAATTCCATATTCTCATGATACCTCCAACTGAACATAATTGCCCGGGCAACAAACTGGTCCTCTATTATATCATCGG
ATGAACTTCCATGCCAGTTATTTAAAATTCAAGTGA-----TGGATTTGCTTTACCTTTGCACTCTGAATGTGAAAATTG
GAATTTTATTTTTGTAGCAACTTGCTTGTAGGTTTTTTTGTGGGGGTAAACTAGGTGCTTTATTCAAAGTTCAAAACATG
AGGAATACAAGCAATGTCAGGCAAAACCCCTAGCCACACATGGCGGCCCACCGCAAGAGACGTAACTACTTTAGCTAGCG
AGTGGGCCTCGAAATTATTCTCCCTACATTCGAAACGGAAATCAACAGAAGAAAAAAAGTTCCTACTAGTCTGAATCTCC
CTTAGAATGTTCTTCGTTCTTGATGTTTGAGATCGCTTCTAGACAGTCCAAAGCTATCACCAAGTCCTACAAATGTAGGT
CCCGAGCGAGGGCTAGCGCCTCGCTGCAGGTTTGCGCCTCCACGCTAGCTGGATCGATCAAACCCTTGAATACCACTGCC
GAAGCTCCAAGATATTGCCCAGCCTTATCTTTGCAAACCACGGCCGCTGCTCCTCTCTCCCCCGGGGTAGACAGGCCGCC
ATCACAACTCATCTTCACTGCAATACCCGATGGTGGCAACCATGTAATGACCCGGGGGCGTTCACGTCGACCCACCTGTG
CTTTCGGTGCTCGAACAGCAGCAATCTCTAGCTCCTCCAAATACCTCCTTATGAAACACATTGTCGACAATAGACTCTTG
AAATTTGTTTTCATGAATTGCCTTCCGTCGAGCCCACCATATCGCCCACATAGTCACCAAAACTCGAGCAAGTTCATCTT
GGTTTGTGGATTCCAAGAGCCAGAATAGCCATAACCTTGCATCCTCATTTTGGTTTGATATTACATGCTCAAGCAACTCT
TCGTCTCCTAAAGCCCACACACACCTGCCCATTCGGCAACAAAGGAGGGAGTGTCGCCATGTGTCCTTGGCTGGCGGCTG
CACCACAAATAGAGCAAACCGGAGTGTCTGCCATGTTCCTCTCATGTCGGACTAGACCCGTTGGAAGCGAGGTATGTGCT
AACGTCCACACAAAAACACGGATTTTAGATGGGACCTTTACCTTCCACAATTGTGACCATGAATTCTTGTCCGCTGCAAC
ATTTGAATGTCCCGGCCGATGTTCTAGCCAGCCTCCCCTCTGAGCCTTGATAGCAGATATCATCCTATAAGCTGACCGTA
CAGAAAAAACACCACACTTGCTTGTAGGTTACTACTCTCTTTTGGCAGTTGGGCCGCTTCGGCGGAGCGAGACAGCCTCC
GCTGGGCAGCGAAAGGGCTTCCGCATCGTCTCATGGACAAGGCAAGGGGGATGCCAGTTGAAGCATTATTGAATCCACTA
CCACTAGTGTGGCATTGTGCGCACGGCAGCTAGGCAGTCACCGCTTTGTCTACAGAGCGAGCGCAAGTGTTCCTCAAATC
GCGCAGCAACTCCCTTTCGAGGTTACTCGATTTGCACAACGAGAACATCGGAGCGTGCGCACACACACAACACTGCTGAC
ATTCACTCAATCATCTTGAGACGAGGTG----GTGCACTGACTACATCACCCAATATATGAAACAAACGGGAAAAAACAG
TACTCCCTCCGTCTAGGTGTGTAAGTCTTCTTACGTTGTGCACCGCGACCAAAGTAGAGAGGAAAACGAGAAAACTTAAT
GTTTTTGCTAATTAATAGCATTGCATGCAATGAACTAACCACTGCATGTTATATTTGATAGTCTCAAGTCATTGAAAGCA
TGCACGGTCCACATCTTTCATTGGTTGATATGTCACAAAACAAGAAACAAAAAGGAAGTTAATGTACGGTGCCCAAATAT
TTTGGGATTATTTGGTTTTCGTAAGGTGACTTACACACCTAGGCGGAGGGAGTAGAAGAAGCTTGCCGTTTCTGCATGAC
AGGAGGGCCGGCCTTCTTGGGCTTATCGCCCAACGGATACCTGCGCTCCAACCGTCGGTCGGGCCGACCCCCC-----AC
GCACTACTCCCAGCTCTGCT-----CTCTGCTCGTAT-AAAGCCCGACCCAACGGAAGCAACGGAACACCA--GCTCGCA
CTCACTCGACACTAGCGAACCATCACCGAAAAAGACACGATCGAGCGCG-----CTCATGGGTGCGAGGCAGCGCGGCGA
GAGAGGTGGTATG---CCGACGACCAGGAGGCCGAGGCTGGCGGCGGTGGCGGACGCGGCGTCGTGGTGCCTCGTGCTGT
CGGCGCTGGCGGCCCTGCTGATGGTGTGCTCGCTCGGGGAGG---CGGAGGCGGTGACT---GTGCGTGGCGCGTCCCTG
TCGGCACGGTGGCGGCCGTGCGAGGAGATCTACGTGGTGGCGGAGGGGGAGACGCTGCACGGCATCAGCGACCGCTGCGG
CGACCCCTACATCCTGGAGCACAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCCTCAGGATCACGC
CCTT------CAGCCCCAGGTCGTCCGTCCCCGCTAGCCCCCCGTAGGTAGATCAAGAAAGAAGAAGAGTTCGATTCTTC
TGAAGAATCATTCCAGTTCGCTCTGAAGAACTCTGATT---TACGAGTAACCTCGCTAGTCTTAGTGGTAGAGGACAGAG
TGTCAGAGCTCACTCATGGATATATGCCTTGTTTCCTTGTAATTATTCTCTCTTATACTTTGTGCGTGGAAAATTGGC--
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>chr4B_720
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-------------------------------CGTGCACTGACTACATCACGCAATATATGAAACCAACGGAAAAAAAAC-
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--------------------------------------------------ATTAGAACAAGCTTGCCGTTTCTGCATGAC
AGGTG----GGCCTTCTTGGGCTTATCGCCCAACGGATACTTGCGCTCCAACCGTCGGTCGGGTCGGCCCCCCCACGCAC
T----ACTCCCTGCTCTGCTCTCCTCTCTGCTCATATAAAAGCCCGACCCAACGGACGCAACGGAACACCACAGCTCGCA
CTCACTCCACACTAGCGAGCCATCACCGCG-AAGCCACGATCGAGCCGAGCGCACTCATGAGGGCGAGGCAGCGCGGTGA
GAGAGGTGGTATGTCGTCGACGAGCACGAGGTCGAGGCTGGCGGCGGCGGCAGACGGGGCCTCGTGGTGCCTCGCGCTAT
CGGCGCTGGCGGCGCTGCTGCTGGTGTGCTCCCTCGGCGAGACGTCGGAGGCGGTCACT---GTGCGGGGCGCCTCGCTG
TCGGCGCGGTGGCGGCCGTGCGAGGAGGTCTACGTGGTGGCGGAGGGCGAGACGCTGCACGGCATCAGCGACCGGTGCGG
CGACCCCTACATCCTGGAGCGCAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCCTCAGGATCACGC
CCTCCAGCCCCAGCACCAGGCAGTCCGTCCCCGCTAG---CCCGTAGGTAGAAGAAGAAAGAAGAAGAGTTTGATTGTTC
TGAAGAATCATTCCAGTTCGCTCTGAAGAAGTCTGATTTAGTACGAGTAACCTCGCTAGTCTTAGCGGTAGAGGAC----
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>SNPs
----S------------------------------S---S--SS-SSS-----------S-S------------------
--------S---------------S---S------------------S---SS------------S------S-------
-------------S-SS----S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S--------S-----
--S---------SS-SSSSSSS--SS-S---S-S-----S-S-----S-------S----S----------------SSS
--S---------S---------S----SSS--S-S-SSSSS--S-----------------SS------------SS-S-
SSS--S-------SS---------S--------S----------------------------------------------
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--------------------------------------------SS-S--------SS----SS----------S----S
S-S---------------S-S----S---S-S----SS-S-SS--S--------S-------------------------
-------S-S----------------------------------------------------------------------
-----------------S-----S-----S-------S----S---S-------------------------S------S
-S---------------S---SS----SSSS-------------------------------------------------
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---S--S----------------------------S--------------------------------------------
----------------------S--------S------------------------S------S----------------
---S--S---------------------S---------------------------------------------------
------S-----S---------S---SS---------------------------------------------------S
----------------------------------------------------S-S-SSSSSS------------------
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--------------------------------------------------------S-----------------------
-----SS--SSSSSSSS------------------------------------------------S--------------
--S-----------S-----------------------------------------------------------------
--------SSSSS---------------------------S-------------------S-----------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_198
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------------------TCTCGATCATGGGAGTCGGT------------------------------------------
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>reverse_3651
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--------------------------------------------------ACCGGCGTTGAGATTTTCCT----------
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