>input_sequence_82201
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---ATGGCGCGGCTACCGCATGCGTCGCCTATCCCGCATGCCGCCAAGCTGTATAAGACCCTCCCCACCCCGTACTCGAA
CCCTAGCTCCATTCCCCTCGCTCTCTCGCTCACCATCTTCGATTTGGACGCGCCCGATTACCCAACCGCCATGGTCGTCG
TCTTAGCCACGACCACCGCGGTCCCTACCGGCTTGGAGCTTGTGCGGCAGCTCCATCACGGTCGTCTGCGTCTTCTACTC
TACCGGATCAAGGCCGGGGAGCATCATCCGCGACGCTCATGCCTTCTTCCTCCACCATGGCCGTCCGACACCGTCGTTCA
ATCCGCATCATCTCGGCAACCTCCGGCCTCCCCGAGCTCTCCATCGGCCTCGCAGTGA----------------------
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----------------------
>chr5A_1_TraesCS5A01G077800
ACTTTCTTGTGTTGCTCTATACCCCTTTCACGCCCTGTTTCAGGCATCGAACAATTGCCTACCTGCTTGAAACTTCTTAT
T-T--ACCTTGTTACTTTTCTCTCGATATTTTCTTAAGTTTCAACTTGAGAGTTACTATCGATCACA-TTTCCCGA-TTT
ATAAACCAGAT-AGCCACCTTGTAGAGTTTCATTCTTCCGGAGCTAC-----C-CCTTTATTC-TTTCGTAAGTACATTG
GAGTTTCCGAAGAAAGGATACCGACTTCATCATGATGACATGAAG-CAAAGAAATGAAGACATCAACGCAATGGATCGAA
CTCTCCAAGAAGAGCAACAAAGACCAAGAAGACTCGTTAGAATTTCGTAACCAGAACATCCCCCCT-T-ACACCACCTCT
T-AAATCTCGAGACGAGATTTCTAGTAGTGCAGGAGATTTGTAACACCCCGGGCGTCATGCTACAATAAACTCCT-GTTA
ATGGTGCCACGTCATCATAATTAAATTTTGCT-AATCCTCACGTTGTTCCAAACCGACCTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTC-TTATTTCTTCAAACTGTCAA-ATAAAAATGTTCTAGGGTTTGAAAATATTCACTAAGTA
TTTAACATGTAGGAACCAACCTTAAATGGATTTTTAAAT-TGCCCTAGGCATAATTTAAT-TGGACAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACA-TTTCCAAATAACCT--CAATTTTCTTGGACAACA-CC-AAAA-TAT
CAGCAGGTAATTATGTGGGAAGTTTAGACTGTAACTAAAACCATTTAATATCTAAACTAAATACAAAACAATAGCTATAA
AAGGAAACAGTAAAC-----AGAATGTAAAATATA-AAAAAACTAAGCTACTGGGCACTTGGCCCATCTGGCAAAATGGG
CAGTGCAGCCCAGCCCAGCAAAACCCCCCAGTTCTCTCCTTCCTACTGCTCACAGGAGCGTGGTGGACACCTGTGCGTCG
TCCATGGCGCGGCTACCGCATGCGTCGCCTATCCCGCATGCCGCCAAGCTGTATAAGACCCTCCCCACCCCGTACTCGAA
CCCTAGCTCCATTCCCCTCGCTCTCTCGCTCACCATCTTCGATTTGGACGCGCCCGATTACCCAACCGCCATGGTCGTCG
TCTTAGCCACGACCACCGCGGTCCCTACCGGCTTGGAGCTTGTGCGGCAGCTCCATCACGGTCGTCTGCGTCTTCTACTC
TACCGGATCAAGGCCGGGGAGCATCATCCGCGACGCTCATGCCTTCTTCCTCCACCATGGCCGTCCGACACCGTCGTTCA
ATCCGCATCATCTCGGCAACCTCCGGCCTCCCCGAGCTCTCCATCGGCCTCGCAGTGAGCTCCTCTTTGGATTCCAGCGC
--TTTCCCCC-TTCCCCCCGTTGTTGTTTGCCGCCGTGCACTACCGCCACCCCGGCTTGTGCGAGTTCGCGCTCACCGCG
GCTGCGCCCACCTCCACGCGTGCGCCCGCGAGCCCCTGGCAGCGCC-CGTCTAGGCGTGATGCGCTTCCACGCGCGCCCG
AGCCGCGCCCCTGCGCCGCCCGCATCTGTCGCCGTTCGCTGCCGCGGTGCTGCCTCGGCGCCTGCCTGCTGCTCGCTCAC
CTCTGCTGCCCTCTGCTCCGCTGTAGCTGCTGCCTGACTGTTGCGCTGCTGTAGCCGCTACCGACGCCGCTGCCCTGCTC
CAGAACGCGCGTCCGCGTGCTCCGGCCACGCACGAGCCCTGTCCTACTCGCCGCCTACGCCTACTTGTGACGCCCGGGTA
ATTAAGCTACATGAACTCTCTACTAATGATGCCACGTCACTTTCATTACTGTTGCCAATCTTGCATTAGTTCGAAAACAA
AACAAATTTAAAATTTAATTAAAGGCAACCAACAAAAGTTTTCAAAAAATAACACTAAAATGTTCGTGAGATAAGAGATA
ATGCATAGGTAATTATGGTGATGAAACCACAATTTTATAAAAGGTTTAAATGCACTAAAGTTATTAAAACAACAGGTAAA
ACAATTAAATAAATGTCTTTTGTATTTTGTAAAATAACAAACTATTCATTTAGTTGCCCAAAAGTTAATAGGGTAGTAGC
ATAATTATTAGTACTAAATGATGAACTATTTTTATACTATATAAAACTAAAACAAATTAAAACTAAAAGAAAAATAAGAA
AAGGTAAAAGAAGACAAACTAAAAAAAGGAAAACACCCCCACTGGCCGGCCCAGCTGGCCACCGTACCCCCACCCCATGG
GCCAACCAAGCCACCGGCCCACCTCTCCCTCTCCTTATCCCCTGGTCCCCGTGACCTAAATCGAGTGACACCCCACTCCC
CACTCGCTCCTCCCACGTTTCC
>chr5A_1
ACTTTCTCGCGTTGCTCTATACCCCTTCCACGCCTTGTTTCACGCATCGAACAATTGCCTACCCGCTTGAAACTTCTTAT
T-T--ACCTTCTTACTTTTCTCTCGATATTTTCTTAAGTTTCAACTCGAGAGTTACTATCGATCACA-TTCGCTAA-GTT
ATAAACCAGAT-AGCCACCTTGTAGACTTCCGTTCTTCCGGAGCTAC-----C-CCTTATCCT-TTTCGTAAGTACGATG
GAGTTCCCGGAGAAAGGATGCCGACTTCATCAGGATGACCTGAAG-TGGAGAAATGAAGACATCAACGTGGTGGATCGAC
CTCTTCGAGAAGAGCAACCAAGACCGAGAAGAATCGTTAGAATTGCGTAACCTAGTCTTCCCCCCT-T-ACTCTACCTCT
T-AAATCGCGGGACGAGATTTCTTGTAGTGGAGGAGAATTGTGACGCCCGGATAATTATGCTACAGTAATTCCAT-GCTA
ATGATGCCACGTCACCTCGGTTAC--TGTTGT-TAATCTC----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------GCGTTAGTTTGAAACTGA
TTCAAATTCAAGTTTGAATTAA----------------------------------------------------------
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----------------------
>chr2D_1
ACTTTCTCGCGTTGCTCTATACCCCTTTCACGCCTTGTTTCATGCATCGAACAATTGCCTACTCGCTTGAAACTTCTTAT
TGT--ACCTTCTTACTTTGCTCTCGATATTTTCCTAAGTTTCAACTTGAGAGTTACTTTCTACCACA-TCCC-TGA-GTT
ATAAACCAGAT-AGCCACCTTGTAGAGTTCCGTTCTTCCAAAGCTAC-----C-CCTTATCCT-TTTCGTAAGTACGATG
GAGTTCCCGAAGAAAGGATGCCGACTTTATCATGATGACCTCAGG-CTGAGGTATGAAAACATCCGCGTTATGGATCAAC
CTCCTCGAGGAGAGCAACTAAGACCGAGAACACTCGCTAGAATTTCGTAACCAGAACCTTCCCCCT-T-ACGCA---TCT
T-AAATCTTGGGACGAGATTTCTTGTAGTAGAGGAGAATTGTGACACCCCGATAGTTAAGCTACAGTAAACCCCT-GTTA
ATGATGCCAGGTCATTGTAATTAAAATTTTGCAAAACCTCG-CTCGTTTCAAATTTAG-TTGAAATAC-----AAATTCA
--AA-TAACAAATCAAACAA-TAGTTTCATAAAACAGTGAA-TTAAAAATGTTCATTAGGTTGTAAATATTC--------
--------------------------------------------------------------------------------
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----------------------
>chr3A_11
----------GTTGCTCTATACCCCTTTCACGCCCTGTTTCACGCATCGAACAATTTCCTACCCGCTTGAAACTTCTTAT
T-T--ACCTTCTTACTTTACTCTCGATATTTTCTTAAGTTTCAACCCGAGAGTTACTATCGATCACATTCCC-TGA-GTT
ATAAACCAGAT-AGCCACCTTGTAGAGTTCCGTTCTTCCGGAGCTAC-----C-CCTTTATTC-TTTTGTAAGTACGTTG
GAGTTTCCGAAGAAAGGATGCCAACTTCATCATGATGACATGATG-CAAAGAAATGAAGACATCAACGCAATGGATCGAA
CTCTCCAAGAAGAACAACAAAGACCAAGAAGACTCGTTAGAATTTCGAAACTAGAACATTCCCCCT-T-ACACCACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGATTTGTAACACCCCGGGTGTCATGCTACAGTGAACTCCT-GTTA
ATGGTGCCATGTCATCATAATTAAAATTTTCT-AATCCTCACGTTGTTCCAAACCGACCTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTC-TTATTTCTTCAAGCTGTCAA-ATAAAAATGTTCTAGGGTTTGCAAATATTCACTAAGTA
TTTAACATGTAGGAACCAACCTTAAATGGATTTTTAAAT-TGCCCTAGGCATAATTTAAT-TGGACAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACA-TTTCCAAATAACCT--CAAACTTTTTGGACAACA-CCAAAAA-TAT
CAGCAGGTAATTATATGGGAAGTTTAGACTGTAACTAAAATCATTTAATATCTAAACTAAATACAAAACAATAGCTATAA
AAGAAAACAGTAAAC-----AAAATGTAAAATCTA-AAAAAACTAAGCTACCGGGCACTTGGCCCCCG------------
------------------------------GTTCTCTCCTTCCTACTGCTCACAGGAGCATGGTGGACGCCTGTGCGTCG
TCCATGGCGCGGCTACCGCACGCGTCGCCCATCCCGCATGCCGCCAAGCTGTATAAGACCCTCCCCACCCCGTACATGCA
CCCTAGCTCCATTCCCCTCGCTCTCTCGCTCACCATCTTCTATTTGGACGCGCCCGAGTACCCAACCGCCATGGTCGTCG
TCTTAGCCACGGCCACCGCGGTCCCCGCCGTCTTGGAGCTTGTGCTGCAGCTCCATCGCGGTCGTCTCCATCTTCTACTC
TACTGGATCAAGGCTGGGGAGTATCACCCACGACGCTCACGCCTTCTTCCTCCGCCATGGTTGTCCGACGCCGTCGTTCG
ATCCGCATCATCCCGGCAACCTCCGGCCTCCCCGAGCTCTCCATCGGCCTCGCAGTGAGCTCCTCTTTTGATTCCCCCT-
CTTTCCCCCC-TTCCTCCCATTGTTGTTTGCCGCCGTGCACCACCGCCACCCCGGCTTGTGCGAGTTCGTGCTCACCACG
GCCGCGCCCACCTCCACGTGTGCGCCCGCGAGCCCCTGGTAGCGCC-CGTCTAGGCGTGATGCGCTTCCATGCGTGCCCG
AGACGCGCCCCTGCGCCATGCACATCTGCCGCCGTTCGCTGCCGTGGTGCTGCGTCGGCGCCTGCCTACTGCTCGCTGAC
CTCTGCTGCCCTCTGCTCCGCTGTAGCTGCTGCCTGACTGTTGCGCTGCTGTAGCCGCTACCGAGGCCGCTGCCCTGCTC
CGCAACGCGGGTCCGCGTGCTCCGGCCACGCCAAAGACCTGTCCTACTCGCCGC--------------------------
--------------------------------------------------------------------------------
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----------------------
>chr2A_11
----------GTTGCTTTAAACTCCATT--CACGCCTTTTCAGGCATCAAACGATTGCCCGCCCGCTCGAAACTTCCCAC
GAT--ACCTCCTTACTTCGCTCTCGATATTTCCTTAAGTTTCAATTCGAGAGTTACTTTCTGCCACC-TTCCCCGATGTT
ATCGACCAGATAGTCAACCTTGTAGAGGTCTGTTCTCCCGGAA-TAC-----CTCTTTTTTTC-CTTCGTAAGAACGATG
GAGTTCCCGAAGAAAGAATGATAACTTCATAATGATGCATTGATG-CCAAGAAATCAAGACATCAACGCAATGGATCGAA
CTCTCCATGGAGAGCAACAAAGATTGCCAAGACTCGTTAGAATTTCGTAACTAGAACTTTCCCCCT-T-ACACCACTTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGATTTGTAACACCCTGGGTGTCATGCTACAGTAAACTCCT-GTTA
ATGTTGCCTCGTCATCATAATTAAATTTTGCT-AATTATCACTTTGTTCCAAACTGACCTCAAATTCA-----AAAAAAA
ACAA--GACAAGTCAAATTATTAATTTGCTCAAATTGTAAA-TCTAAAATGTTC--------------------------
--------------------------------------------------------------------------------
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----------------------
>chr2D_11
----------GTTGCTTTGAACCCCTTTCACGCCCAGTTTCAGGCATCGAACATTTGCCTGCCCGCGCGAAACTTACCAT
GAT--ACCTCCTTAGTTTGCTCTCGATATTTTCTTAAGTTTCAATTCGAGAGTTACTTCCCGCCACC-TTACCCGATGTT
ATCGACAAGATAGTCAACCTTGCAGAGGTCCGCACTCTCGGG---ATACCCAC-CCCTTATTC-TTTTGTAAGTATGATG
GAGTTCCCGAAGAAAGGATGCCGACTTCATCATGATGACCTGAAG-CAGAGAATTGAAGACATCAACGTAATGGATCGAC
CTCTTCGAGAAGAGAAACCAAGACCGAGAACACTCGCTAGAATTTCGTAGCCCTAACCATCCCCCT-TGGCTCCACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGATTTGTAACACCCCGGGTGTCACGCTACAGTAAACTCCT-GTTA
ATAGTGCCACGTCATCATAATTAAATTTTGCT-AATCTTTACTTTGTTCCAAACCGACCTTAAATTCA-----AATTTGG
--AA-AGACAATTCAAATTA-TAATTTATAAAACC-GTAAA-TTTAAAATGTTCATCGGGTTGGAAATATTCACT-----
--------------------------------------------------------------------------------
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----------------------
>chr5A_12
-----------TTGCTCTGGACCCCTTT-ACACTTTGTTTCAGGCATCGAACGATTGCCTACCCGCTTGAAACTTCTCAT
GGT--ACCTTCTTACTTTGCTCTTGATATTTTCTTAAGTTTCAGTTCGAGAGTTACTTTCCACTGCC-TTCCCTGATGTT
AGATACCAAATAGTCAACCTTGCAGACGTCCGATCTCCCGGAA-TATACCCAC-CCTTTATTC-TTTCATAAGTACAATG
GAGTTCCCGAAGAAAGGATGGCGACTTCATCATGATGACTCGGAG-AAGAGAAATAAAGACATCAATGTAATGGATCGAC
CTCTTCGAGAAGAGCAACCAAGACCAAGAAGACTCGTTAGAATTTCGTAACTAGATCTTTCCCC-T-T-ACTCCACATCT
TAAAATCTCGGGACGAGATCTCTTGTAGTGGAGGAGATTTGTAACACCCCGGTAGTTGAGCTACAGTAACCACAC-ACTA
ATGGTGTCGTGTCATCGCGATTAAA--TTTCT-AAACGTCACTTTGATCCAAACCGAATTCAAATTCA-----ATTTTAA
--AAATG--AAGTCAAATTA-TTATTTCTTCAAATGGTAAA-ACAAAAATGTTTGCAGGGTTGCAAAAATTCACTAACTA
ATTGTCATATAAGAACAAA-------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>chr7D_12
-----------TTGCTCTGAACCCCTTTCACATTTCGTATCAGGCAACGAACGATTGCCTATGCGCTTGAAACTTCTATT
T-TGCACCTTCTTACTTTGCTCTCGATAATTTCTTAAGTTTCAATTCGAGAGTTACTTTTCGCCACC-TTCCCTAATATT
ATCTACCAGATAAGAAACCTTGTAGAGGTCTGTCCTTTTGAAGCTAC-----C-CCTTATCCT-TTTCGTAAGTACGATG
AAGATCCCGAAGAAAGGATGTCTACTTCATCATAATGACCTGAAG-TAGAGAAATGAAGGCATCAACGTAATGGATCGGC
CACTTCGAGAAGAGCAACAAAAACCGAGAATATCTGCTAGAATTTCGTAGCCAGAACTTCCCCCCT-T-ACTCCACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGGGATTTGTAACACCCCGGTAGTTAAGCTACAATAACCACAC-ACTA
ATGGTGCCATGTCATCATGATTAA--TTTTCT-AAACCTCACTTTGATCCAAACCCAATTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTA-TTATTATTTCAAACTGTCAA-ATAAAAATGTTTGATGGGTTGCAAATATTCACTAAGTA
ATTAACATGTTGGAACCAACCT----------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>chr1B_12
-----------TTGCTCTGGACCCCTTTCACACTTTGTTTCAGGCAACAAACGATTGCCTATGTGCTTGAAACTTCTATT
T-TGCACCTTCTTACATTGCTCTCGATACTTTCTTAAGTTTCAATTCGAGAGTTAATTTCCGCCACC-CTTCCTCATGTT
ATCTACCAGATAAGCAACATTGTAGCGGTCTGTTCTTCCGAAGTTAC-----C-CCTTGTCCT-T--CGTACGTACAATG
GAG-TCCCGAAGGAAGGATGCCGACTTCATCGTGAAGGCCTGAAAACAGAGTAATGAAGACATCAACGTAGTGGATCGAA
CTCTTCTAGAAGAGCAACCAAGACTGAGAAGAATCGTTAGAATTTCATAGACAAAACTTT-TCCCACT-GCTCCACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGATCTGTAACACCCTGGGTGTCATGCTACAGTAAACCCCT-ATTA
ATGGTGCCACATCATCATAATTGGATTTTGCT-AATCATCACTTTGTTCCAAACCGACCTCAAATTCA-----AATTTAA
--AA-TA--AAGCAAAATTA-TTAGTTATCCATACGGAGAATATAAAAATGTTTGAGTTGTTGCAAATATTCACTAAGTA
ATTGTCATATAGAAACCAAC------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>chr5A_13
------------TGCTCTGAACCCCTTTCATGCCCTGATTAAGACATCGAACGGTTGCCTACCCGCTCGAAACTTCTTAT
AGT--ACCTTCTTATTTTACTCTCGATGTTTTCTTAAGA-TCAATTCAAGAGTTACTTTTTGCCACA-TTCCCTGA-GTT
ATCTATCAGTTAATCAACCTTGTAGAGGCCCGTTCTTCCAAAGTTAC-----C-CCTTATTAT-TTTTGTAAGTACGATG
GAGTTTCCGACGAAAGGATGATGACTTCATCACGATGACGTGAAG-CAGAGGAATGAAGACATCAATGAAAGGCATCACC
ATCTTTGAGAAGAGCAGCCAAGAACAAGAAGACTCGTTAGAATTTCGTAACCAACTCTTT-CCCCT-T-ACTCCACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGAATTATAACACCCCGAGAATCATGCTACAGTAAGCTCAAGCCTA
ATGATGCCATGTCATCATAATTAT--TTTGCT-AATCATGATCTTGTTCCAAATCAAACTCAAACTCAAATTCAAATTCC
--AA-AAACAAGTCAAATTA-TTATTTCTTCAAACTGACAA-GGAAAAATGTTCGATGGGTTGAAAATATTCCCTAACTA
TTTTTCATGTAGGAGACAACCT----------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>chr3A_21
--------------------ACCCCTTTCACACCCTGTTTCAGGCATCAAGCGATTGCTTACCCGCTCAAAACTTCCCAT
GAT--ACCTCCTTACTTTGCTCTCGATATTGTCTTAAGTTTCAATTCGAGAGTTACTTTCCGCCACC-TTCCCTGATGTT
ATCAACCAAATAGTCAACCTTACAGAGGTCCATTCTTCCGGTA-TAC-----C-CCCTTATTC-TTTCGTAAGTACAACA
GAGATCCCGAAGTAAGGATGCCTACTTCATCATGATGACCTGGAG-TAGAGAAATAAAGACATCAACGTAATGGATCGAC
CTCTTTGAGAAAAGAAACCAAGACTGAGAAGACTCGATAGAATTTCGTAACCACATCTTT-CCCCT-T-ACTCTACCTCT
T-AAATCTCGGGACGAGATTTCCTGTAGTGCAGGAGATTTGTAACACCCCGGGTTTCATGCTACAGTAAACTCCT-ATTA
ATGGTGCCACGTCATCATAATTGAATTTTGCT-AATCATCACTTTGTCCCAAACGGACCTAAAATTCA-----AATTTAA
--AA--GACAAGTCAAAATT-ATTTCTCCTCACGCTATAAA-ACTAAAATGTTC--------------------------
--------------------------------------------------------------------------------
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----------------------
>chr1A_23
----------------------CCCTTCCACTCCCCGTTTCAGGCATCGAACGATTGCCCACCCGCTCGAAAGTTCCCAT
GAT--ACCTCCTTACTTTGCTCTCGATATTTCCTTAAGTTTCAATTCGAGAGATATTTTCCGCCACC-TTCCCCGATGTT
TCGG-------------CCTTGTAGAGGTCCGTTCTACCAGG---ATACCCAC-CCTTTGTTC-TTTTGTAAGTACGATG
TAGACCCCGAAGAAAGGATGACGACTTCATCATGATGACCTGAAG-CAGAGAAATGAAGACATCAACGTAATGGATCGAC
CTCTTCGAGATGAGCAACCAAGACCGAGAAGACTTGATAGAATTTCATAATCACATCTTT-CCCCT-T-ACTCCACCACT
T-AAATCTCGGGATGAGATTTCTTGTAGTGGAGGAGAATTGTGACGCCCGGATAGTTATGCTACAGTAATACCTT-GCTA
ATGATGCCACGTCACCATGATTAC--TGTTGT-CGATCTCATGCTGGTTCAAAAATGATTCAAATTCA-----AATTTCA
--AA-TAAAAAGTCAAATTC-TTATTTCTTCAAACTGTCAA-ATAAAAATGCTCGATGGGTTGCAAATATTCACTTAGTA
ATTAAGATGTAGGAGCCAAG-TTAAATGGATTTTTAAAT-TTCCCCTAGAAAAAATTAAGGTGGTCAAGCAACACTTATT
ATGCCCATTAAAATATGAACTTATTTTCACACA-TTTCCAAATAACCC--CAAACTTTTTGGACAACACCC-AAAA-TAT
CAGTAGGTAATTATGTGAGGAGCTTCAACATTAACTAAAATCATTTAGAATCTAAAATAAATACAAAACAGTAGATAAAT
AATAAAAATAGTTAACCAAAAAAATGAAAAAC--A-AAAGACCTAATCTACTGGGCACTTGGCCCATCTGGCAAATTGG-
--------------------------------------------------------------------------------
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----------------------
>chr1A_36
-----------------------------------TGTTTCAGACATCGAACGATTTCCTATCCGTTTGAAACTTCTCAC
GGT--ACCTTCTTACTTTACTCTCAATATTCTCTTAAGTATCTATTCAAGAGTTACTTTCTACCACA-TTCCCTGA-GTT
ATCTGCCCGATGGTCAACCTTGTA-AGGTCCGTTCTTCCGAAGATGC-----C-CATTATCCTTTTTCGTAAGTATGATG
GAACCCCCGAAGAAAGGATGACGACTTAATCATGATGCCCTGAAG-AAGAGGAATGGGGACAACAACACAATGAATCGAC
CTCTTCGAGAAGAGCTACCAAGACCGAGAAGACTCGTTAGAATTTCGTAACCAGAACTTT-CCCCCCT-ACAGAACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGAATTGTGACGCCCGGGTAATTAAGCTACAGTAATCCCCT-CCTA
ATGTTGCCATGTCATCGCAGTT--AATTTGCT-AAACCTCACTTTGATCCAAACTCGATTCAAATTCA-----GAGTT-A
--AAATG--AAGTCAAATTA-TTATTTCTTCAACCGGTAAA-AAAAAAT-GTTCGGTAGGTTGCAAATATTCACTAGGTA
ATTAACATGAAGGATCTAACATTAAATGGATTTTTAAATCTCCCCTGGAAATAATTAAAG-TGGTCATTCAACACTTTT-
ATGCCTTTTAAAATGTGAACTTATTTTCAAACA-ACTCCAAATAACCCCCCAAACCTTTTGGACAATACCC-AAAA-TAT
CAATAGGTAATTATGTGAGGAGTATCAACTTTAACTAAAACCATTTAGTACCTACACTAAGTACATAGCAGTAGCTAAAT
AAGAAAAAAGATAAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------
>chr1A_259
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGATGACCTGAAG-CAGAGAATTGAAGACATCAATGAAAGGGATTAAC
TTCTTCGAGAAGAGCAGCCAAAACCGAGAAGATCCGTTAGAATTTCGTAACCAAACTTTTCCCCCT-T-ACTCTACCTCT
T-AAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGATTTGTAACACCCCGATAATCAAGGTACAGTAACCTCAC-CCTA
ATGT-GCCATGTCATCAGG-TTTTATTAAGCC-AATGTGCCACTTGATGAAAATCTGAGTCAAATTCA-----CATTTCA
--AA-TAACAAGTCAAATTC-TTATTTCTTCAAACTGTCAA-ATAAAAATGTTCGAGGGTTTGCAAATATTCACCAAGTA
TTTAACATGTAGGAACCAACATTAAATTGATTTTTAAAT-TACCCTAGGCATAACTTAAG-TGCACAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACA-TTTCCAAATAACCT--CAAACTTTTTGGACAACA-CC-AAAA-TAT
CAGCAGGTAATTATGTGGGAAGTTTCAACTTTAACTAAAATCATCTAATATCTAAACTAAATACAAAACAATAGCTATAA
AAGAAAAACAGTAAACAAAAATG--------TAAA-AAACAACTAAACTACTGGGCACTTGGCCCATCTCGCAAAATGGG
CAGCGCAGCCAGCCCA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------
>chr5D_411
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GTGCATGAGATTTGTAACACACCGATAATCAAGCTACAGTAACCTCAC-CCTA
ATGT-GCTATGTAATCATG-TTATATTAAGCC-AATTTGCAACTTGATAAAAATCCGAGTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTC-TTATTTCTTCAAACTGTCAA-ATAAAAA-GTTCGAGGATTTACAAATATTCACTAGGTA
TTTAACATGTAGGAACCAACATTAAATGGATTTTAAA-TCGCCCCTAGGAATAATTAATG-TGGATAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACATTTTCCAAATTACCT--CAAACTTTTTAGACAGCA-CC-AAAA-TAT
CAGCAAGTAATTTTGTGGAAGTTTCAG-CTTGAACTAAAATCATTTAGTATCTAAGCTAAATACAAAACAATAGCTACAT
AAGAAAAACAGTAAAC---AAAAATGAAAAATATATAAAAAACTAAACTACTGGGCACTTGGCCCATCTGGCATAATGGG
CAGCCCAGCTAGCCCA----------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>chr5A_420
ATTCTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TAACACCCCGGGTGTCATGCTACAGTAAACTCCT-GTTA
ATGGTGCCATGTCATCATAATTAAATTTTGCT-AATCCTCACGTTGTTTCAAACCGACCTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTC-TTTTTTTTTCAAACTGTCAA-ATAAAAATGTTCTAGGGTTTGCAAATATTCACGAAGTA
TTTAACATGTAGGAACCAACCTTAAATGGATTTTTAAAT-TACCCTAGGCATAATTTAAT-TGGACAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACA-TTTCCAAATAACCT--CAAACTTTTTGGACAACA-CC-AAAA-TAT
CAGCAGGTAATTATGTGGGAAGCTTAGAATGTAACTAAAATCATTTAATATCTAAACTAAATACAAAACAATAGCTATAA
AAGAAAACAGTAATC-----CAAATGTAAAATATATAAAAAACCAAGCTACTGGGAACTTGGCCCATCTGGCAAAATGGG
CAGTGCAGCCTAGCCCAGCAAAACCCCCTTGTTCTCTCCTTCCTACTGCTCACACGAGCGTGGTGGACGCCTGTGCGTCG
TCCATGGCGTGGCTACCGCACGCGTCGCCCATCCCGCATGCCACCAAGCTGTATAAGACCCTCCCCACCCCGTACACGAA
CCCTAGCTCCATTCCCCT-GCTCTCTCGCTTACCATCTTCAATTTGGACGCGCCCGAGTACCCAACCGCCATGGTCGTCG
TCTTAGCCACGGCCACCGCGCTCCTCGCCGGCTTGGAGCTTGTGCGGCAGCACTATCGCGGTCGTCTGCATCTTCTACTC
TGCCGGATCGAGGCTGGGGAGCATCACCCGCGACGCTCGCGCCTTCTTCCTCCGCCATGGCCGTCCGACGCCGTCGTTCG
ATCCGCATCATCCCGGCAACCTCCGGCCTCCCCAAGCTCTCCATCAGCCTCGCAGTGAGCTCCGCTTCAGATTCCCCC-G
--CTTTCCCCCTTCCTCCCGTTATTGTTTGCCGCCGTGCACCGCCGCCACCCCGACTTGTGCGAGTTCGCGCTCACCGCG
GCCGCGCCCACCTCCACGCGTGCGCCCGCGAGCCCCTGGCAGCGCC-CGTCTGGGCGTGATGCCCTTCCACGCGCGCCCG
AGCCGCGCCCAA--------------------------------------------------------------------
--------------------------CTGCTGCCGC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr5A_423
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TGTAACACCTCGGGTGTCATGCTACAATAAACTCCT-GTTA
ATGGTGCCATGTCATCATAATTAAAAATTGCT-AATCCTCACGTTGTTCCAAACCGACCTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTC-TTATTTCTTCAAACTGTCAA-ATAAAAATGTTCTAGGGTTTGAAACTATTCACTAAGTA
TTTAACATGTAGGAACCAACCTTAAATGGATTTTTAAAT-TGCCCTAGGCATAATTTAAT-TGGACAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACA-TTTCCAAATAACCT--CAATTTTCTTGGACAACA-CC-AAAA-TAT
CAGCAGGTAATTATGTGGGAAGTTTAGACTGTAACTAAAACCATTTAATATCTAAACTAAATACAAAACAATAGCTATAA
AAGAAAACAGTAAAC-----AGAATGTAAAATATA-AAAAAACTAAGCTACTGGGCACTTGGCCCATCTGGCAAAATGGG
CAGTGCAGCCCAGCCCAGCAAAACCCCCCAGTTCTCTCCTTCCTACTGCTCACAGGAGCGTGGTGGACACCTGTGCGTCG
TCCATGGCGCGGCTACCGCACGCGTCGCCTATCCCGCATGCCGCCAAGCTGTATAAGACCCTCCCCACCCCGTACTCGAA
CCCTAGCTCCATTCCCCTCGCTCTCTCGCTCACCATCTTCGATTTGGACGCGCCCGATTACCCAACCGCCATGGTCGTCG
TCTTAGCCATGGCCACCGTGGTCCCCGCCGGCTTGGAGCTTGTGCAGCAGCTCCATAGTGGTCGTCTGCATATTCTACTC
TACCGGATCAAGGCCGGGGAGCATCATCCGCGACGCTCGCGCCTTCTTCCTCCGCCATGGCCGTCCAACGCCGTCGTTCG
ATCCGCATCATCCCGGCGACCTCCGGTCTCCCCGAGCTCTCCATCGGTCTCACAGTGAGCTCCTCTTTGGATTCCCCC-G
CTTTCCCCCC-TTCCTCCCGTTGTTGTTTGCCGCCGTGCACCGTCGCCACCCCGGCTTGTGTGAGTTCGCGCTCACCGTG
GCTGCACCCACCTCCACGCGTGCGCCCGCGAGCCCCTAGCAGCGCT-CGTCTAGGCGTGATGCGCTTCCACGCGCGCCCG
GGCCACGCCCCTGCGCCGCGCGCATCTGCCGCCGTTCGCTGGCGCGGTGCTGCGTCGGCGCCTGCCTGCTGCTCGCTGAC
CTCTGCTGCCCTCTGCTCCGCCGTAGCTGCTGCCTGACTGTTGCGCTGCCGTAGCCGCTACCGACGCCGCTGCCCTGCTC
CCCAACGCGCGTCCGCGTGCTCCGGCCACGCCCGAGCCCCGTCCTACTCGCCGCCTACGCCTACT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr3A_423
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TGTAACACCCCGGGTGTCATGCTACAGTAAACTCAT-GTTA
ATGGTGCCATGTCATCATAATTAAAAAGTTCT-AATCCTCACGTTGTTCCAAACCGACCTCAAATTCA-----AATTTCA
--AA-TAACAAGTCAAATTC-TTATTTCTTCAAACTGTCAA-ATTAAAATGTTCTAGGGTTTGCAAATATTCACTAAGTA
TTTAACATGTAGGAACCAACCGTAAATGGATTTTTGAAT-TGCCCTAGGCATAATTTAAT-TGGACAAGCAACACTTATT
ATGCCCATTTAAATATAAACCTATTTTCAAACA-TTTCCAAATAACCT--CAAACTTTTTGGACAACA-CC-AAAAATAT
CAGCAGGTAATTATGTGGGAATTTTAGACTGTAACTAAAATCATTTAATATCTAAACTAAATACAAAACAATAGCTATAA
AAGAAAATAGTAAAC-----AAAATGTAAAATATA-AAAAAACTAAGCTACCGGGCACTTGGCCCATCTGGCAAAATGGG
CAGTGCAGCCCAGCCCAGCAAACCCCCCCTGTTCTCTCCATCCTACTGCTCACAGGAGCGTGGTGGACGCCTGTGTGTCG
TCCATGGCACGGCTACCACACGCGTCGCCCATCCCGCATGCCGCCAAGCTGTATAAAACCCTCCCCACCCCGTACACAAA
CCCTAGCTCCATTCCCCTCGCTCTCTCACTCACCATCTTCGATTTGGACGCGCCCGAGTACCCAACCGCCATGGTCGTCG
TCTTAGCCACGACCATCGCGGTCCCCACCGGCTTGGAGCTTGTGCGGCAGCTCCATCGCGGTCGTCTGCATCTTCTACTC
TACCGAATCAAGGCCGGGAAGTATCACCCGCGACGCTCGCGCCTTCTTCCTCCGCCATGGCTGTCTAACACCGTCGTTCG
ATCTGCATCATCCTGGCAACCTCGGGCCTCCCCGAGCTCTCCATCGGACTCGCAGTGAGCTCCTCTTTCGATTCCCCC-C
--TTTTCCCC-TTCCTCCCGTTGTTGTTTGCCTCCGTGCACCGCCGCCACCTCGGCTTGTGCGAGTTCGCGCTCACCGCG
GCCGCGCTCACCTCCACGTGTGCGCCCGCGAGCCCCTGGTAGCGCCTCGTCTAGGCGTGATGCGCTTCCATGCGCGCCTG
AGCCGCGCCCCTGCACCGCGCGCATCTACCGCCGTTCGATGCCGCGATGCTGCGTCGGCGCCTGCCTGATGCTCGCTGAC
CTCTGCTGCCCTCTGCTCCGCTGTAGCTGCTGCCTGACTGTTGTGCTGCTATAGCCGCTACCGACGCCACTGCCCTGCTC
CGCAACGCGCGTCCGCATGCTCCGGCCACGCCCGAGACCCGTCCTACTCGCTGCTATGCCTGACT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr5A_1778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTGTGACGCCCAGGTA
ATTAAGCTACAGTAACTCTCTGCTAATGATGCCACGTCACTTTGATTACTGTTGCGAATCTTGCGTTAGTTCGAAAACGA
AACAAATCTAAAATTTAATTAAAGGCAAACGACAAAAGTTTTCAAAAATTAACACTAAAATATTCGTGAGATAAGTGATA
ATGCATAGGTAATTATGGTGATGAAACCACATTTTTATAAAAGGTTTAAATGCACTATAGTAATTAAAACAACAGGTAAA
AGAATTAAATAAATGTCTTTTGTATTTTGTAAAATAACAAACTATTCATTTAGTTGCCCAAAAGTTAATGGGGCAGTAGC
ATAATTATTAGTACTAAATTGTGAACTATTTTTATACTATATAAAACTAAAACAAATTAAAATTAAAAGAAAAATAAGAA
AAGGTAAAAGAAAACAAATTAAAAAAGGGAAAACACCCCCACTGGTCGGCCCAGCTGGCCACCGTACCC---CCCCATGG
GCCAACCAAGCCGCCGGGCCACCTCTCCCTCTCCTTATCTCCTGGTCCCCGTGATATAAATCGAGTGACACCCCACTCCC
CACTCGCTCCTCCCACGTTCCC
>SNPs
-------S-S----------------------------------------------------------------------
----------S------------------------------------------------------------------S--
-----------------------------S--------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------S------------S-----------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-------------------------------S-----------S----------
---------------------------------------S-------------S-------------------------S
------------S--------------------------------------------------------------SS-S-
---------------S-------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------------S--------S------------------------S-----------------------S--
--------------------------------------------------------------------------------
-SS----------------------------S-------------------------------------------S----
-----------SS--------S---------------------S-----------S--------S-------------S-
----------------------------S-S-----------------S------------S-------------S----
-------------------------------S-------------------------S---S------------------
-S-------------------------------------------------------------------S---S------
-------------------SS-----------------------------------------S-----------------
------------S-----S-------S------------------S-----------------------SSS--------
------------S----S---------------------S--------------SS------------------------
-------------------S--
>forward_454
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AGATTTGTAACACCCCGGGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_1320
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TGCCTTCTTCCTCCACCATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_1270
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CCATCACGGTCGTCTGCG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_2338
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCCACCTCTCCCTCTCCTTA-------------------------------------------
----------------------
