>input_sequence_82200
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGGCATCCTCGAGAAGGTTGCTGGCGGTGGCTTT
GCTGGCGATGCTGGTCGCGGGCGCGTGGTGCGCGGCACCGGTGACCTTCACGGTGGAGAAGGGGTCGGACACGGGGCCGG
GCAAGAAAAAGCTGGCGGTGCTGGTGAGTTACGACATGCCAGGCGACACCATCTCGGAGCTGGAGATTATGCAGCAGGAC
GCCGACGACTGGGTGGCCATGACCAAGGGCGAGGGCGGCCTATGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTT
CAACTTCCGCTACTTCACTAAGAAAGGCATGAAGAACGTCTACGACAACGTCATCCCCGACAACTACACCATCGGCACCA
CCTATACACCTCAAGGGTAG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr4D_1_TraesCS4D01G356000
TTGTGTTGCTCGGAGATGAAATAATTTTACTCTGATTAGCTGGCAAATCTTTTGGAACAACTTTTTTTGTTTCTGTTGAG
AATTATCTTTTGGGAACAACTGGTCTGAAAAAAGAAGTCCATAGGCCAATTCCTCGTCGCAGCTGGCCAGCAGCTTGTTT
TCAAGATTATGGGCCATAATGTCCTCCGGAAGATTACTACTAAAGTGTGGAATAGTTGTGATTCTCATATTAATATTCAC
ACCTTGAGGTATCAAACCCTCCCAAACAGTGCATGGTTTGACATGGTTAGCATCGTGTGGACTCATCTAGCAATAGCTTG
TATTTAGCCATTCCTTTCAAGCGTTCTCGAACAAAAACCATGAAGGATGACAAGGCCATGCGCCTAAAGCAAGATGATGC
CTTGGGAAGCTTAGAAATTGCCGTTTCTAACATGACAGAATTTGATGGTGGATGCGAGCATATGTCTCATAGGCCATATC
ATGTTTACCTCTACACCAACAACTTGATGCGACACGCTGAAAAGGTAAAGCTGCTGAGCTTCTTGTTGGAGCACAATGGC
CCTCCTGGTGGCAATGCACTGCCAATTCTTTCGATCATATGTGGTGTTGGAGTTTCAAAGAAAACATTGGTTCATGTATG
TGACGACGAACGGGCTCACATGCGCTTCTTCTCCAGGTGACGAAGACTGGAATCGTTTTAGCTGGTCTAAAATTGCAGCG
CGTAGTATCATGTAGGTGTGTGTACGTACGCCTGTACGCGCCTAGCTATATATGGCACGATGCCCATGATATCCAATCAT
GCATGCCAAAACAAGCGGCCAGGCCACACATGAGCACGAGCAGCTCCGGTGACCAAGGCGAGCCACATACGCGCCAACGG
ACAAGCATGGCCACCGCGAGCGCCCATATATAAATTCCACAAACGTAGATCATCATCCACACACACGGCTCACAGCTCAC
ACGTGCGTAGTTCAGCTCCAACCGATAATCTAT-----CTTCGAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGGCTTT
GCTGGCGATGCTGGTCGCGGGCGCGTGGTGCGCGGCACCGGTGACCTTCACGGTGGAGAAGGGGTCGGACACGGGGCCGG
GCAAGAAAAAGCTGGCGGTGCTGGTGAGTTACGACATGCCAGGCGACACCATCTCGGAGCTGGAGATTATGCAGCAGGAC
GCCGACGACTGGGTGGCCATGACCAAGGGCGAGGGCGGCCTATGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTT
CAACTTCCGCTACTTCACTAAGAAAGGCATGAAGAACGTCTACGACAACGTCATCCCCGACAACTACACCATCGGCACCA
CCTATACACCTCAAGGGTAGCGCGTCCTTCCATTGACGTAGATCCGCAAAAGTATGTTCAATCGGTCTTCCCTGGGTTTT
GGTAGTTTTTTAGAGAGATATCATGTATGAATAATAGAAAAAGTTGTCGACGCCACTCTTGACTGGTTG-TTTATGTATG
TAACTGTGTC----------------GGTGCTAGGGTTATGGAGTGTGTGTTGATATG-----GGCTAGTGTGTCCC---
-TGTGTGGGTAAGCATATGCGTTTGTACCGTGTTTCTAAAAAAACTATATTTGCTTAGGATTGAGAAATATGTGGTAACT
TGATTGTGCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATCAATCGGTACAACATCTGGTTTGCAGATAAATACTCACTCTGCACAATAATATCATCGTGCT
CCTATAAAAGTGTGACTGGGTTATGTTCCCTTTTTTTAGGGGAAACTTTATCGCTTTACTTAAACAAAGTTTGGAATCTC
ATCCAAAATTACATCTAAAATAAAGTCTGGTGGCAAGTTCACCCAAGTATCACGGCGTTCCTCTCC--TACGCTTAATCT
AGCTAATTTATGCGCGGCAACATTCCCAGAACGACGAACCCAAGAAACCTTGAACTCCGTCAACGAGTTGAGCATCTCCT
TGATCTCTTGTAAACAGGGTCCAACAGCGGACATATTCCTATTTGGTTCGTTGATCATTTGCACGACCATCTTACTATCC
AGCTCCACATGTGCTCGCTGAACCTGTAGCTCGATGGCCAACTGA-TAGCCCACCTACATGCCAGGACCTCCACTGCTTC
CGGATCAAC
>chr4B_295
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTGTGGACCCATCTAGCAATAGCTTT
TATTTGGCCATTCCTTTCAAGCGTTCTCGAACAAAAACCAAGAAGGATGACAAGGCCATGCGCCTAAAGTCAGATGATGC
CTTGGGAAGCTTAGAAATTGCCGTTTCTAACATGACAGAATTTGATGGTGGATGCGAGCATATGTTTCATAGGCCATATC
ATGTTTACCTCTACACCAACAACTTGATGCGACACGCTGAAAAGGTAAAGCTGCTGAGGTTCTTGTTGGAGCACAATGGC
CCTC-----------GCACTGCCAATTTTTTCGATCATATGCGGTGTTGGAGTTTCAAAGAAAACATTGGTTCATGTATG
TGACGACGAACGGGCTCACATGCGCTTCTTCTCTAGGTGACGAAGACTGGAATTGTTTTAGCTGGTCTAAAATTGCAGCG
CGTAGTATCATGTAGGTGTGTGTACGTACGCCTGTACGCGCCTAGCTATATATGGCACGATGCCCATGATACCCAATCAT
GCATGCCAAAACAAGCGGCCAGGCCACACATGAGCACGACCACCTCCTGTGACCAAGGCGAGCCACATACGCGCCAAGGG
ACAAGCATGGCCACCGCGAGCGCCCATATATAAATCCCACAAACATAGATCATCAT--ACACACACGGCTCACAGCT-AC
ACGTGCGTAGTTCAGCTTCTACCGATAATCTATCTAGGCTTCAAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGGCTTT
GCTGGCGATGCTGGTCGCCGGCGCTTGGTGCGCGGCCCCGGTGACATTCACGGTGGAGAAGGGGTCGGACACGGGGTCAG
GCAAGAAGCAGCTGGCGGTGCTGGTGAGTTACGACATGCCAGGCGACACCATGTCGGAGCTGGAGATCATGCAGCACGAC
GCCGACGACTGGGTGGCCATGACCAAGGGCGAGGGCGGCCTGTGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTT
CAACTTCCGCTACTTCACTAAGAAAGGCTTGAAGAACGTCTACGACAACGTCATCCCCGACAACTACACCATCGGCACCA
CCTATACACCTCAAGGGTAGCGCGTCCTTCCGTCAACGTAGGTCCGCAAAAGTATGTTCAATCGGTTTTCCCTGGGTTTT
GGTAGTTTTTTAGAGAGATGTCATGTATGAATAATAGAAAAAGTTGTCCACGCCACTCTTGACCGGTTG-TTTATGTATG
TAACTGTGTC----------------GGTGCTAGGGTTAGGGA--GTGTGTTGATATG-----GGCTAGTGTGTCCC---
-TGTGTGGGTAAGCATATGCGTTTGTACTCTGCTTCTAAAAAAACAATATTTGCTTAGGATCGTGAAATATGTAGTAACT
TGATTGTGCATTTTTCTTTTTCTTTTTTTGTGTGTGTGAGGGGGGCGTGGGGGGAC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ATCAATCGGTACAACATCTGGTTTACAGATAAATACTCACTCTGCACAATAATATTATCGTGCT
ACTATAAAAGTGTGACTGGGTTATGCTCT-TTTTTTTAGGGGAAACTTTACCGCTTTACTTAAACAAAGTTTGGGATCTG
ATCCAAAATTACATCTAAAATAAAGTCTGGTGACGAGTCCACCCAAGCATCACGGCGTTCCTCCCCTATACGCTTACTCT
AGCTAATTTATGCGCGCCAACGTTCCCACAACGACGAACCCAAGAAACCATGAACTCCGTCAACGAATTGAGCATCTCCT
TGATCTCCTGTAAACAGGGTCCAACAGCGGACATATTCCTATTTGGTTCGTTGATCATTTGCACGACCATCTTACTATCC
AGCTCCACATGTGCTCGCTGAACCTGTAGCTCGATGGCCAACTGAATAGCCCACCTGCATGCCAGGACCTCCACTGCTTC
CAGATCAA-
>chr5A_741
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TGTACGTACGCCGGTACGCGCCTAGCTATATATGGCACGATGCCCATGATATCCAATCAT
GCATGCCAAAACAAGCGGTCAGGCCACACATGAACACGAGCACCTCCGGTGACCAAGGCGAACCGCATACGCGCCAACGG
ACAAGCGCGGCCAGCGCGAGCGCCCATATATAAATTCCACAAACATACATCATCATCCTTACACAGGGTTCACAGCT-AC
ACGTGCGTAGTTCAGCTTCTACCGATAATCTATCTAGGCTTCGAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGACTTT
GCTGGCGATGCTGGTCGCGGGCGCGTGGTGCGCGGCACCGGTGACCTTCACGGTGGAGAAGGGGTCGGACACGGGGTCGG
GAAAGAAGCAGCTGGCGGTGCTGGTGAATTACGACATGCCAGGCGACACCATGTCGGAGCTGGAGATCATGCAGCACGAC
GCCGACGACTGGGTGGCCATGACCAAGGGCGAGGGCGGCCTGTGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTT
CAACTTCCGCTACTTCACCACGAAGGGCATGAAGAACGTCTACGACAGCGTCATCCCAGATAACTACACGATCGGCACCA
CCTACACACCCGAAGGGTAGCG------TCGCTCGACGGCCATCCACAGAATTATGTTCGGTAGATCTTTCCTGGGTTTT
GGCAATTTTTAAGAGAGATGTGATGTACGGATAATAGAAAAAGTTGTTGAGGCCACTCTTGACCGGTTCCTTTATGTATG
TAATTGTGTCCGCTCAGTTTCTCGAAGGTCCTAGGGGTAGGGA--GTGTGTTTGCGTTGATATGGCTAGTGTGCATCTGT
GTGTGTGTGTTAGCATATGAGTTTGTATTGTGTTTCAGAATAAACTATATTTGCTTAGGATCCTGAAATA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----------------S
-----S----------------------------------S----------------------------SS---------
-----------------------------------------------------------------S--------------
----------------------------------------------------------S---------------------
----SSSSSSSSSSS------------S-------------S--------------------------------------
---------------------------------S-------------------S--------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------S--------------------------------S--
-----------------S-S------------------------------------------------------------
----------------------------------------------------------------------------S---
-------SS-------------------------------------------S--------------S--------S---
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-S----------------------------------------------
-------------------S-------------------------------------------S----------------
---------------------------------------S---SS-----------------------------------
----------------------------S--------------------------------S-S---------S------
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS------------------------S------------------------------S--------
S------------------------S--SS--------------------S-----------------------S----S
--------------------------------S-S---S--------S---------------S------------S---
----------------S----S------S--------------------S----------------S-------------
-------S------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-S------S
>forward_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAACCCTCCCAAACAGTGCA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_2182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ATTCCCAGAACGACGAACCC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
