>input_sequence_82186
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---------------------------------------------------------------------ATAAACACACA
CGGATAAG------------------------------------------------------------------------
------------TTAGCAA----AGAGCAGCGAAGTTTTTCTGTAGGCTGAAGAGCAGAGTTAGCTCAGAGACAAAGGA-
AGAAGAGAGGCGAGGTAGCTAGCTTCAGACATGGGGTTCTGCTGTGGGCCTTCGGATGTCCAGGTGCTCCCCAAGAACAC
GTCCTCCTCTT---CCTCCTCCTCATC------------GTTTGTTAAAGGTTCCGGTGATGGCGGCAAGAAGAAACAGC
AGCAAGTTGTAAAGAAGGAACAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACGCCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTAATGTGACAGATTAGCCGAGAAC--CAGTGTATTTCATAGAAATATA----------
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>chr3D_1_TraesCS3D01G508900
TTACATCGAAATTAAGATGGTGTTGCCCCGACTTCAGCCCCATCTCGCCACTTCGAGGGGCTGATGGGTTAGTGCCCTCG
TCGGGCATGTGTTGAAGTATTGTGTGGTGTTAATTTGGTCGCCCGCTTGTGGTGGTCGTGGCCGTGTCTTGTGTGCAGTT
AGTATGCACTCGTGGGAGATCACGGGCCGGGTCCATAGCTAGCCGTGGTATTGGTTCGGCAACAACAACCATGAGTTTCC
CTCTATTGTTCTAAGCGTGACAA-----------TTGTTATTCTCGGCATCGTGCACCTCCGACGACCAAGCGAGCGACG
GCGAACTCAGTTCGGAAGGATTTTTTTTATTGCGGAGCTAGATATATTCCCAAGTCTCCTCCACCATATTATGAAAAGTT
GGGACAACTATCCTACACGCG-----------------------------------------------------------
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---GCAGGGCATGGTGAGCGGTCCTCAAATGATTCAAACTATCCTATGTGTGGGTGTTTTTTTTACACATTTTTGTTAAA
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------------------------------------------------------------------------------AA
TACAATTGAGATATTAT---------------------------------------------------------------
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-------------TACACAAAAATCCCATCTTCTACCGAGAATAGAAACAAATGGAAGTCTGTAACCAAAGAACCTTGCC
GGCCAAGGAAGCTCATCTCTGGGCTGAGTCACCGGTCAACGCTCCATGATCGCCATTATCCTATTCTATCAACCAGGCTA
AGGAAAATTCAACAAGCCATGATG---------------------CACAGACCCTACTTACTGACAGGTGGACCAGAAGT
GTCCCTAGGCCCACCTGTCAGTACCTGACTGCTTCGTGGTGTGCGTACGTGACATTTTTTTAAGGCTCATGTGTGCGTCA
CTGCCGATGAAAGGAGAGAGAGGCCGTTGTAGTTGCAACGGGTGCAGGTGCCCGCGAACACGTGCTCAAGCTCGAATGGA
ACGAAATATATACTATAATACTGTGATTTTTAAATTAGG--GAGCGTAGAAACCTTCCACTGGAAGTTTGCATCGAGCCA
CTCT------TT-------------TCAACTATATAAACAGGTCGATAGGAGCATATCG-TTTGCCAACATAAACACACA
CGGATAAG------------------------------------------------------------------------
------------TTAGCAA----AGAGCAGCGAAGTTTTTCTGTAGGCTGAAGAGCAGAGTTAGCTCAGAGACAAAGGA-
AGAAGAGAGGCGAGGTAGCTAGCTTCAGACATGGGGTTCTGCTGTGGGCCTTCGGATGTCCAGGTGCTCCCCAAGAACAC
GTCCTCCTCTT---CCTCCTCCTCATC------------GTTTGTTAAAGGTTCCGGTGATGGCGGCAAGAAGAAACAGC
AGCAAGTTGTAAAGAAGGAACAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACGCCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTAATGTGACAGATTAGCCGAGAAC--CAGTGTATTTCATAGAAATATACGATCTTGTG
TGTTCTCCTATTAGCCTACGCCCGAGTCTGTAACTCAGGATGCATAGCT-CCATTGTCCCGTTGAAGTTTCGAGGTTTGT
AGTGTGGCCACGTGTTCTATTTATTCATTGATGGGTTGGCTGTATCAGAATATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTGTCCATTGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCTTGCTTGACT
TAATTGACCAGATCAAACGAGCAAAGCTTAGCTTATTTCTTCCTCCTGCTGAAGGTGGGGATGTGATCAAGAACCAGGCA
AAAGCAAAC-AAAATGTTACATCCAAA-AAAATAGTAGAGAAGTCGAAATGAAAACATTATACTTGAAGAAGTGCACTGT
TACAACCGAACAGTTCTGCTTTATTAACTTGAACATGACTAAATGAAGTAGAAACAAATATTGTGACACATATTTAGATA
GGGATATGTGCACTATTTTGGGCCATATTGAACTGCAGAAATGATATGCTCTTTAGCAGAAAAAATTTCACCAACTTTTT
GTAGGTTATTTATAGGGCCACTGCAT-GGATCCGTACGTGGTCGTTACTCACTCATGCGGACTCCAGGGAGCTTTTGCCT
ACTGGGTGCAACCGCTGCTGGCAGATAGTAGAACGGATTATCTTCAACCGATTTGGATGGCAAACTGA----TAATAGGC
TAGGTGTTTAGTCATTGTAGCCTATTCTTTCGCCGGCTGTGGCATTTTCTATTTTATTTTGCTTTGGCTACTTTTGTGAG
CCAATACTGGACCTCATATTTTGTATTCTACTTTCGTTAGATAATATGGCTGCATGCATCACTTTGATGTATAGGCCGGG
GCCTATTCTCCTTTTCAAAAAAAAACTTGAACATGACATGGACAAAGCCATAAAAGGAATGGCCGACGATTT-TTTTCCT
TGATTGGGGATTGATTGATGGTTAGGTAGATATTTTTCA
>chr3A_14
-------------AAAATGGTGGTGCCCCGACTTCAACCCCGTCTCGCCACTTCGAGGGGCTGATGGGTTAGTGCCCTCG
TCAGGCATGTGTTGAAGTATTGTGTGGAGTTGATTTGGTCGTCCACTT---GTGGTCGTGGACTTGTCTTGTGTGCAGTT
AGTTTGCACA-ATGGGAGATCACGGGCAGAGTCGCTACCTGGCCGTGATATTGGTTCCGCGACAACAACCATGAGTTTCC
CTCTATTGTTCTAAGTGTGACACAATTGTTGTTCTTCTTCTTCTTGTCATCGTGCTCCTCCGACAACCAAGCAAGCGACG
GCAAATTCAATTCGGACGGA----TTTTATTGTGGAGCTAGACATATTTCTAAGTCTCCTCCAGCATATTATGAAAAGTT
GGGACAACTATCCTACGTGCG-----------------------------------------------------------
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---GCAGGGCATGGTGAGCGATCCTCAAATGATTCAAACTATCCTATGTGTGGGTGGTTTTTTACACC--TTTTGTTAAA
T-------------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
TACAATTGAGATATTATCTATACCAATATAAAAATATTCAAAGGGGCAGATCCAACTAATCTTGGCCATCAAACTAAGTC
AATCCAACGACCTAGACTGCTCCAATGTCGAGCGTTCAATGTGTTTAACGTGCAATTAATATCATATCAAATATTTCACT
AATCACAAAATTAACACACAAGTACCTAATATGTGCGTGCAATTAATATATTGCCTAAATATTAACGTGCATTGCACGTG
CGCATTTACTAGTTACACAAAAATCCCATCTTCTCCCGAACGTAGAAACAAATGGAAGTTTGTAACCAAAGAACCTTGCC
GGCCAAGGAAGCTCATCTCTGGGCTGAGTCACCGGTCAACGCTCCATGATCGACATTATCCTATTCTATCAACAAGGCTA
CGGAAAATTCAACAAGCCATGATG---------------------CACAGACCCTACTTACTGACAAGTGGACAAGAAGT
GTCCCTAGGCCCACCTGTCAATACCTGACTGCTTCGTGGTGTGCGTACGTGACATTTTTTTAAGGTTGGTGCGTGCGTCA
CTGCCGATGAAAGGAGAGAGAGGCCGTCGTGGTTGCAATGGGTGCAGGTGCCAGCGAACATGTGCTCGAGCTCGAATGAA
GCAAAATATA---TATAATACTGTGATTTTTAAATTATAGAGAGCGTAGAAACCTTCCACTGGAAGTTTGCATCGAGCCA
CTCT------TTTCCACTATAAAAATCCACTATAAAAACAGGTCGATGGGAGCATATCG-TTTGCCAACATAAACACACA
CGGATAAG------------------------------------------------------------------------
------------TTAGCA--------------------------------AAGAGCAGAGTTACCTCAGAGACAAAGGA-
AGAAGAGAGGCGAGGTAGCTAGCTTCAGACATGGGGTTCTGCTGTGGGCCTTCGGATGTCCAGGTGCTCCCCGAGAACAC
GTCCTCCTCCTCTCCCTCCTCCTCCTC------------GTTTGTTAAAGATTCCGGTGATGGCGGCAAGAAGAAACAGC
AGCAAGTTATAAAGAAGGAACAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACACCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTAATGTGACAGATTAGCCGAGAAC--CAGTGTATTTCATAGAAATATATGATCTTGTG
TGTTCTCCTATTAGCCTACGTCTGAGTCTGTAACTTAGGATGTATAGCT-CCATTGTCCCGTTGAAGTTTCGAGGTTTGC
AGTGTGGCCACGTGTTCTATTTATTCATTGATGGGTTGGCTGTATCAGAATATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTGTCCATTGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCTTGCTTGACT
TAATTCACCAGCTCAAACGAGCAAAGCTTAGCTTATTTCTTCCTCCTGCTGAAGGTGGGGATGTGATCAAGAACCAGGCA
AAGGCAAAC-AAAATGTTACATCC--A-AAAATAGTAGAGAAGTCAAAATGAAAACATTATACTTGGGGAAGTGCACTGA
TACAACCGAACAGTTCTGCTTTATTAACTTGAACATGACTAAATGAAGTAGAAACAAATATTGTGACACATATTTAGATA
GGGA-ATGTGCACTATTTTGGGCCATATTGAACTGCAGAAATGATATGCTCTTTAGTAGAAAAAATTTCACCAACTTTTT
GTAGGTTATTTACAGGGCCACTGCAT-GGATCCGTACGTGGTCGTTACTCACTCATGCGGACTTCGAGGAGCTTTTGCCT
ACTAGGTGCAACCGCAGCTGGGAGATGGTAGCACGGATTATCTTCAACCAATTTGGATGGCAAACTAATAATTAATAGGC
TAGGTGTTTAGTCATTGTAGCCTATTCTTTCACCGGCTGTGGCATTTTCTATTTTATTTTGATTTGGCTACTTTTGTGAG
CCAATACTGGACCTCATATTTTGTATTCTACTTTCGTTAGATAATATGGCTGCATGCATCACTTTGATGTATAGGCCGGG
AGCTATCCTCCTTTTCAAAAAAAAACTTGAACATGACATGGACAAAGCCAAAAAAGGAATGGCCGACGATTTTTTTTCCT
TGATTGGGGATTGATTGATGGTTAGGTGGATAT------
>chr3A_14
-------------AAAATGGTGGTGCCCCGACTTCAACCCCGTCTCGCCACTTCGAGGGGCTGATGGGTTAGTGCCCTCG
TCAGGCATGTGTTGAAGTATTGTGTGGAGTTGATTTGGTCGTCCATTT---GTGGTCGTGGACTTGTCTTGTGTGCAGTT
AGTTTGCACA-ATGGGAGATCACGGGCAGAGTCGCTACCTGGCCGTGATATTGGTTCCGCGACAACAACCATGAGTTTCC
CTCTATTGTTCTAAGTGTGACACAATTGTTGTTCTTCTTCTTCTTGTCATCGTGCTCCTCCGACAACCAAGCAAGCGACG
GCAAATTCAATTCGGACGGA----TTTTATTGTGGAGCTAGACATATTTCTAAGTCTCCTCCAGCATATTATGAAAAGTT
GGGACAACTATCCTACGTGCG-----------------------------------------------------------
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---GCAGGGCATGGTGAGCGATCCTCAAATGATTCAAACTATCCTATGTGTGGGTGGTTTTTTACACC--TTTTGTTAAA
T-------------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
TACAATTGAGATATTATCTATACCAATATAAAAATATTCAAAGGGGCAGATCCAACTAATCTCGGCCATCAAACTAAGTC
AATCCAACGACCTAGACTGCTCCAATGTCAAGCGTTCAATGTGTTTAACGTGCAATTAATATCATATCAAATATTTCACT
AATCACAAAATTAACACACAAGTACCTAATATGTGCGTGCAATTAATATATTGCCTAAATATTAACGTGCATTGCACGTG
CGCATTTACTAGTTACACAAAAATCCCATCTTCTCCCGAACGTAGAAACAAATGGAAGTTTGTAACCAAAGAACCTTGCC
GGCCAAGGAAGCTCATCTCTGGGCTGAGTCACCGGTCAACGCTCCATGATCGACATTATCCTATTCTATCAACAAGGCTA
CGGAAAATTCAACAAGCCATGATG---------------------CACAGACCCTACTTACTGACAAGTGGACAAGAAGT
GTCCCTAGGCCCACCTGTCAATACCTGACTGCTTCGTGGTGTGCGTACGTGACATTTTTTTAAGGTTGGTGCGTGCGTCA
CTGCCGATGAAAGGAGAGAGAGGCCGTCGTGGTTGCAATGGGTGCAGGTGCCAGCGAACATGTGCTCGAGCTCGAATGAA
GCAAAATATA---TATAATACTGTGATTTTTAAATTATAGAGAGCGTAGAAACCTTCCACTGGAAGTTTGCATCGAGCCA
CTCT------TTTCCACTATAAAAATCCACTATAAAAACAGGTCGATGGGAGCATATCG-TTTGCCAACATAAACACACA
CGGATAAT------------------------------------------------------------------------
------------TTAGCA--------------------------------AAGAGCAGAGTTACCTCAGAGACAAAGGA-
AGAAGAGAGGCGAGGTAGCTAGCTTCAGACATGGGGTTCTGCTGTGGGCCTTCGGATGTCCAGGTGCTCCCCGAGAACAC
GTCCTCCTCCTCTCCCTCCTCCTCCTC------------GTTTGTTAAAGATTCCGGTGATGGCGGCAAGAAGAAACAGC
AGCAAGTTATAAAGAAGGAACAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACACCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTAATGTGACAGATTAGCCGAGAAC--CAGTGTATTTCATAGAAATATATGATCTTGTG
TGTTCTCCTATTAGCCTACGTCTGAGTCTGTAACTTAGGATGTATAGCT-CCATTGTCCCGTTGAAGTTTCGAGGTTTGC
AGTGTGGCCACGTGTTCTATTTATTCATTGATGGGTTGGCTGTATCAGAATATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTGTCCATTGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCTTGCTTGACT
TAATTCACCAGCTCAAACGAGCAAAGCTTAGCTTATTTCTTCCTCCTGCTGAAGGTGGGGATGTGATCAAGAACCAGGCA
AAGGCAAAC-AAAATGTTACATCC--A-AAAATAGTAGAGAAGTCAAAATGAAAACATTATACTTGGGGAAGTGCACTGA
TACAACCGAACAGTTCTGCTTTATTAACTTGAACATGACTAAATGAAGTAGAAACAAATATTGTGACACATATTTAGATA
GGGA-ATGTGCACTATTTTGGGCCATATTGAACTGCAGAAATGATATGCTCTTTAGTAGAAAAAATTTCACCAACTTTTT
GTAGGTTATTTACAGGGCCACTGCAT-GGATCCGTACGTGGTCGTTACTCACTCATGCGGACTTCGAGGAGCTTTTGCCT
ACTAGGTGCAACCGCAGCTGGGAGATGGTAGCACGGATTATCTTCAACCAATTTGGATGGCAAACTAATAATTAATAGGC
TAGGTGTTTAGTCATTGTAGCCTATTCTTTCACCGGCTGTGGCATTTTCTATTTTATTTTGATTTGGCTACTTTTGTGAG
CCAATACTGGACCTCATATTTTGTATTCTACTTTCGTTAGATAATATGGCTGCATGCATCACTTTGATGTATAGGCCGGG
AGCTATCCTCCTTTTCAAAAAAAA-CTTGAACATGACATGGACAAAGCCAAAAAAGGAATGGCCGACGATTTTTTTTCCT
TGATTGGGGATTGATTGATGGTTAGGTGGATAT------
>chr3A_14
-------------AAAATGGTGGTGCCCCGACTTCAACCCCGTCTCGCCACTTTGAGGGGCTGATGGGTTAGTGCCCTCG
TCAGGCATGTGTTGAAGTATTGTGTGGAGTTGATTTGGTCGTCCACTT---GTGGTCGTGGACTTGTCTTGTGTGCAGTT
AGTTTGCACA-ATGGGAGATCACGGGCATAGTCGCTACCTGGCCGTGATATTGGTTCCGTGACAACAACCATGAGTTTCC
CTCTATTGTTCTAAGTGTGACACAATTGTTGTTCTTCTTCTTCTTGTCATCGTGCTCCTCCGACAACCAAGCAAGCGACG
GCAAATTCAATTCGGACGGA----TTTTATTGTGGAGCTAGACATATTTCTAAGTCTCCTCCAGCATATTATGAAAAGTT
GGGACAACTATCCTACGTGCG-----------------------------------------------------------
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---GCAGGGCATGGTGAGCGATCCTCAAATGATTCAAACTATCCTATGTGTGGGTGGTTTTTTACACC--TTTTGTTAAA
T-------------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
TACAATTGAGATATTATCTATACCAATATAAAAATATTCAAAGGGGCAGATCCAACTAATCTCGGCCATCAAACTAAGTC
AATCCAACGACCTAGACTGCTCCAATGTCGAGCGTTCAATGTGTTTAACGTGCAATTAATATCATATCAAATATTTCACT
AATCACAAAATTAACACACAAGTACCTAATATGTGCGTGCAATTAATATATTGCCTAAATATTAACGTGCATTGCACGTG
CGCATTTACTAGTTACACAAAAATCCCATCTTCTCCCGAACGTAGAAACAAATGGAAGTTTGTAACCAAAGAACCTTGCC
GGCCAAGGAAGCTCATCTCTGGGCTGAGTCACCGGTCAACGCTCCATGATCGACATTATCCTATTCTATCAACAAGGCTA
CGGAAAATTCAACAAGCCATGATG---------------------CACAGACCCTACTTACTGACAAGTGGACAAGAAGT
GTCCCTAGGCCCACCTGTCAATACCTGACTGCTTCGTGGTGTGCGTACGTGACATTTTTTTAAGGTTGGTGCGTGCGTCA
CTGCCGATGAAAGGAGAGAGAGGCCGTCGTGGTTGCAATGGGTGCAGGTGCCAGCGAACATGTGCTCGAGCTCGAATGAA
GCAAAATATA---TATAATACTGTGATTTTTAAATTATAGAGAGCGTAGAAACCTTCCACTGGAAGTTTGCATCGAGCCA
CTCT------TTTCCACTATAAAAATCCACTATAAAAACAGGTCGATGGGAGCATATCG-TTTGCCAACATAAACACACA
CGGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTAGCA--------------------------------AAGAGCAGAGTTACCTCAGAGACAAAGGA-
AGAAGAGAGGCGAGGTAGCTAGCTTCAGACATGGGGTTCTGCTGTGGGCCTTCGGATGTCCAGGTGCTCCCCGAGAACAC
GTCCTCCTCCTCTCCCTCCTCCTCCTC------------GTTTGTTAAAGATTCCGGTGATGGCGGCAAGAAGAAACAGC
AGCAAGTTATAAAGAAGGAACAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACACCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTAATGTGACAGATTAGCCGAGAAC--CAGTGTATTTCATAGAAATATATGATCTTGTG
TGTTCTCCTATTAGCCTACGTCTGAGTCTGTAACTTAGGATGTATAGCT-CCATTGTCCCGTTGAAGTTTCGAGGTTTGC
AGTGTGGCCACGTGTTCTATTTATTCATTGATGGGTTGGCTGTATCAGAATATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTGTCCATTGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCTTGCTTGACT
TAATTCACCAGCTCAAACGAGCAAAGCTTAGCTTATTTCTTCCTCCTGCTGAAGGTGGGGATGTGATCAAGAACCAGGCA
AAGGCAAAC-AAAATGTTACATCC--A-AAAATAGTAGAGAAGTCAAAATGAAAACATTATACTTGGGGAAGTGCACTGA
TACAACCGAACAGTTCTGCTTTATTAACTTGAACATGACTAAATGAAGTAGAAACAAATATTGTGACACATATTTAGATA
GGGA-ATGTGCACTATTTTGGGCCATATTGAACTGCAGAAATGATATGCTCTTTAGTAGAAAAAATTTCACCAACTTTTT
GTAGGTTATTTACAGGGCCACTGCAT-GGATCCGTACGTGGTCGTTACTCACTCATGCGGACTTCGAGGAGCTTTTGCCT
ACTAGGTGCAACCGCAGCTGGGAGATGGTAGCACGGATTATCTTCAACCAATTTGGATGGCAAACTAATAATTAATAGGC
TAGGTGTTTAGTCATTGTAGCCTATTCTTTCACCGGCTGTGGCATTTTCTATTTTATTTTGATTTGGCTACTTTTGTGAG
CCAATACTGGACCTCATATTTTGTATTCTACTTTCGTTAGATAATATGGCTGCATGCATCACTTTGATGTATAGGCCGGG
AGCTATCCTCCTTTTCAAAAAAAAACTTGAACATGACATGGACAAAGCCAAAAAAGGAATGGCCGACGATTTTTTTTCCT
TGATTGGGGATTGATTGATGGTTAGGTGGATAT------
>chr3B_14
-------------AAAATGGTGGTGCCCTGACTTCAACCCCATGTCACCACTTTGAGGGCCTGAAGGGTTAGTGCCCTCG
TAGGGCA-GTGTTGAAGTATTGTGTGGTGTTGATTTGGTTGCGCCCTT---ATGGTCGTGGACTTGTCTTGTCTGCAGTT
AGTTTGCGGTCATGGGAGATCACGGGTTGTGTTGCTCGCTGGCCGTGATATTGGTTCGGCAACAACAACCATGAGTTTCC
CTCTATTGTTCTATGTGTGACGCAATTG------TTCTTCTTCTTGTCATCTTGCTCCTCTAACGACCAAGCGAGCGACG
GCAAATTCAGTTCGGAAGGA----TTTTATTGCTGAGCTAGATATATTTCGAAGTCCCCTCCAGCATATTATGGAAAGTT
GGGACAACTATCCTATGTGTGGCAGCACTAGTAGAAAAACGACTTTTAGTACCGATTTGTAAGGACCTTTAGTACCGGTT
TTGGAAACCGACACTAAAGGGTGGGGACTAAAGGTCCCCCCCTTTAGTCCCAGTTCAACATGAACCGGGATCAAAGGCCC
ACCACGTGGCACGAGGCGCGCCATGGTCTAGGGACTAAAGCATTTTATTTTTTTGAATTTTTTTTGAAATAAAGCAAAAA
ACAGCCTGCCTACTGGGCCGGCAGGACCTGCATACGACTAGAAACCCAACCTCTAATTGGGCCAGGATGCAGGCCCGTAC
GGCCCAATAGGCCCCACGGGGCAGAAGACTTGAAATAGGCCCACAAGGGCCTGCTTAGAGAGGAGGTCGACACGGTAGTC
GCGGCGGGGCTAATAAACCGGTACGAGCTCCTCTCAACTAGCGAGGTGGTAATAAACATTGTTCACAGTGGCAGCGCATC
ATCTTTAGTACTCGTTGGTGCCACCAACTGGTACTAAAGGTCACAAATGAACCGGGACTAATGCATAGCCATTCGAACCG
GGACTAATAGTACCATTAGTGTCGGTTCATTTACAAACCGGAACTAATTAATGTGTCTCACGTAAAGTAGTTTTTCTACT
AGTGCAGGGCATGTTGAGCGATCCTCAAATGATTCAAACTATCCTATGTGTGGGTATTTTTTTACACC--TTTTTGTTAA
ATAATCACCAGTAGAAAACAGGGCTTTGATTCGGCCAGAAAAAGAGCATTAATCCCGGTTGCATTACGAACCGGGACTAA
TGTGAGCATTAGTTTCGGTTCGAGCGGCTAGGGCACCGTACAGGCATTAGTCCCGGTTTAAATGGGACCTTTAGTCCCGG
TTGGTGCCACAAACCGGGACTAAAGGGTGTGATGCCCATTAGTACCGGTTCGTGGCTCGAACCGGGACTAAAGGTTAGAC
CTTTAGTCCCAGTTAGACCTTTAGTCCCGGTTCGAGCCACCAACCGGTACTAATGCCACGAACCGGTACTAAAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCAGTTTTGTAAAA
AGCAAAAGAAAATGATAAGAACTTCAAAAATTAAAATCCTTCCAGATGTAGTTATATTACTACATGTACTAGTTAGGAAA
ATTTAAAAACTTAAATTTGGACATGTTTTGCAAAAAGTGTAGGGAAAATGTAAAACGGCTATAACTTTTGCATACGATGT
CAGAAAAAAAGTATAATATACTCCCTCCATTCCTTTATGTAAGGTGTATTATTTTTGACACGGTGACCAAGACACATAAT
TATACACATGTTAGGACAAAATAAACCTTGGCAAAATCACTGATTAGCGGTAACTAAATCATTAGGCAACGAAAGTAAGA
GATAAACACAATCAAGAGAGAGATACTTTCCTTTTTTCTCTTTACAAGAAAAGATGCATGCAATCAGGGGAGAGATACTC
TCCTATTTTTGAAGGGGTAACAATGAAATTACGAGGAATGAAAAGAAATGCACCTTACATTGTGGAATTTTATCAAAAAC
CAAATACACCTTATATAAAGAAATGGAGGGAGTATCAAAATGTTCAGGACGAAAATTCGCATCCGATTTTGACCGCCTAC
GGCTTGTTTGCAAATTTTTAGAATCCTCAAATTCTAAAAGGAAAAAAGTTATGCACAAATTATATTTTTTTTAATTTTGG
TTAAATCACGTCAAACTTTGGTCAAACTACTTATTCAAGAAGTATTAGTGTTACTAAATAATTTTCCAATAATATTAGTG
TTACTAAATAATTATTACAGTTTTTTAGAATTTTGGTCAAATCTGGTCAAACTGTGGTCAAATCTGGTCAAACTACTTAT
TCAAGAAATATTAGTGTTACTACATAATTATTCAAGAATATTAGTGTTACTAAATAATTATTTCAATTTTTTGAAATTTG
GTCAAATCTGGTCAAACTGTGGTCAAACTATGGTCAACCTACTTATTGAAGAAATATTAGTGGTACTAAATAATTATTGT
TTTTTAGAATAATTGTTTCAAACTCAAACAGTGAAACGTGTGACTTCATGCTCAAGCTAAACTCATGAGGGTTAATAGGA
TTGACATCTTACTATTGTCAGGAAAACAACAAGTGCAGACTTGGAAACGAGGGGGAATAGAACCCGAAAGTTAAGCGTGC
TCAAGCTGGAGTAGTGAGAGGATGGGTGACCGGCCGGGAAGTTAGATGATTTGGAATGATGATGGGTGATTAGAGATTAA
AGGTTAAATTGAGCAATGATGAGGGGTAATTAGAGATTAAATTGAAAAATAATTCAGAAATTTAAAAATAAAAAAAATCA
AATTTTTTATTAAAAAAAATCATTTAAAAAAATACGTTTAGTACTGATTGGTGTTACCACCGGGACTAAAGGTGGAGTTC
CAGGCAGCGGCCACGTGAACGGCCTTTAGTCCCGGTTCGTGTAAGAACCGAAACTAAAGAGGGGAGGGGAGTTTTAGTAA
CGACCCTTTAGTCCCGGTTCCAGAACCAGGACTAAAGGCCCTTATAAATCGGAACAAATGATCCTTTTTCTACTAGTGAA
TACAGTTGAGATATTAT---------------------------------------------------------------
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-------------TATAAAAAAT--CCATCTTCTCCCGGAAGTAGAAACAAATGGAAGTCTGTAACCAAAGAACCTTGCC
GGCCAAGGAGGCTCATCTCTGGGCTGAGTCACCGGTCAACGCTCCATGATCGCCATTATCCTATCCTATCAGCGAGGCCA
AGGAAAATTCAACAAGCCATGATGCACGAGATGTACCTGCCACCCCACACACCCTACTTACTGACAAGTGGATCAGAAGA
GTCCCTAGGCCCACCTGTCAGTACCTGA-TGCTTCGTGGCACGCGTACTTGACA-TTTTTTAAGGTTAGTGCGTGCGTCA
CTGCCCATGAAAGGAGAGAGAGGCCGTTGTGGTTGCAACGGGTGCAGGTGCCCGCGAACACGTGCTCAAGCTCGAATGAA
ACAAAATATA---TACTACTCCCTCCGTTCCTAAATATAAGTCTTTGAAGAGATTTCACTATGAACCACATACGGAGCAA
AACGAATGAATCTACACTCTAAAATGCATCTATATACATCCGTATGTGGTTCATAGTGGAATCTCTTCAAAGACTTATAT
TT------------------------------------------------------------------------------
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-------------------------------------------------------------------------AGAACAC
GTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCGTTTGCTGAAGATTCCGGTGATGGCGGCAAGAAGAAGCAGC
AAGAAGGTGTAAAGAAGGAACAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACGCCCCGCCTT
CCCTTCCATTCTCGGCCCGGTCTAATGTGACAGATTAGTCGAGAAC--CAGTGTATTTCACATAAATATACGATCTTGTG
TGTTCTCCTATTAGCCTACGTCCGAGTCTGTAACTTAGGATGCATAGCT-CCTTTGTCCCGTTGAAGTTTCGAGGTTTGT
AGTGTGGCCACGTGTTCTATTTATTCATTGATGGGTTGGCTGTATCAGAGTATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTGTCCATAGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCATGCTTGACT
TAATTTACCAGATCAAACGAGCAAAGCTTAGCTAATTTCTTCCTCCTGCTGAAGGTGGGGATGTGATCAAGAACCAGGCA
AAAGCAAAC-AAAATGTTACATCC--AAAAAATAGTAGAACAGTCGAAATGAAAACATTATACTTGAAGAAGTGCACTGA
TACAACCGAACAGTTCTGCTTTATTAACTTGAACATGACTAAATGAAGTAGAAACAAATATTGTGGCACATATTTAGATA
CGGATATGTGCACTATTTTGGGCTATATTGAACTGCAGAAATGATATACTCTTTAGCAGAAAAAA-TTCACCAACATTTT
GCAGGTTATTTACAGGGCCACTGCATGGGATCCGTATGTGGTCGTTACTCACTCATGCGGACTCCAGGTAGCTTTTGCCT
ACTGGGTGCAACCGCAACTGGGAGATGGTAGCACGGATTATCTTCAACCGATTTGGGTGGCAAACTAAT----AATAGGC
TAGGTGTTTAGTCATTGTAGCATGTTCTTTCGCCTGTTGTGGCATTTTCTATTTTATTTTGCTTTGGCTACTTTTGTGAG
CCAGTACTGGACCTCATATTTTGTATTCTACTTTCGTTAGATAATATGGCTGCATGCATCACTTTGATGTATAGGCCAGG
GGCTATCCTCCTTTTCAAAAAAAAAACTAGACAAAGCC------------AAAAACGAATGGCCGACGA-TTTTTATCCT
TGATTGGGGATTGATTGATGGTTAGATAGATATTTTTCA
>chr3A_901
TTTTAAAT------------------------------------------------------------------------
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----------------------------------TTAGG--GAGCGTAGAAACCTTCCGCTGCAAGTTTGCATCGAGCCA
CTCC------TC-------------TCCACAGTATAAAAAGTTCGGCAGGAACCAAGT--TTTTCCAACAGAAACGCACA
CGGTCCAG------------------------------------------------------------------------
------------TTTGTTAAAACAGAGCAGCTAAGTTTTTCATTT-GCTGAAGAACAGAGTGAGCTGCGAGAGAAAGCAT
AGAAGAGAGGCGAGCTTGCTAGCTGCAGCCATGGGGTTCTGCTGTGGGCCTTCGGATGTCCAGGTGCTCCCCAAGAACAC
CGCCACTTCCTCCTCCTCATCCTCCTCGTCTTC---------TGCTAAAGATTCCGGTGATGGCGGCAAGAAGAAACAGC
AGCAAGGTGTA---AAGGAGCAGGGGAAGGAGAAGAAGATGAGCAACCTTGACCGGGCCGCCCTCACAACGCCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTCATGTGATAAATTAGCCGAGAACAGCAGTGTATTTCATAGAAATATACGATCTTGTG
TGTTCTCTTATTAGTCTACGGCGGAGTCTGGAACTTAGGATGCATAGCT-CCATTGTCCCGTTGAAGTTTCGAGGTTTGT
AGTGTGGCCATGTGTTCTATTTATTCATTGACGGGTTGGTTGTATCAATATATCCAAATTACAGGTGTGTTATACCAGAG
TT------CATTGTCCATCAGGATAATATATTTTTTTCCCTACTTCT--TTTGTTGGAATATTATTCCCCTCGTTTGACT
TAATTGACCAGATTGAACGAGCAAACCTTATCCTATTTTTTCCT---GCTGAAGGTGCGGATGTGAGCAAGAACCAGGCA
AAAGCAAATGAAAATGTTGTACCC-AA-AAAATAGTAGAGAAGTCGAAATGAAATTATTTTACTTGGGGAAGTGCAGTGA
TACAACCAAACAGCTCCGCTTTGTTAACTTGAACATGAC-----------------------------------------
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>chr3B_905
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-------------------------------AAACTAGG--GAGGGTAGAAACTTTCCACTGGAAGTTTGCATCGAGCCA
CTCT------TC-------------TCCACTGTATAAAACGGTCGCCAGGAACCGATCATTTTGCCAGCAGAAACACACA
CGGTCCAG------------------------------------------------------------------------
------------TTTGTTGAAACAGAGCAGCTTAGTTTTTCATCT-GCCGAGGAGCAGAGTGAGCTGGGAGAGACAGGA-
AGAAAAGAGGCGAGCTAGCGAGCTGCAGCCATGGGGTTCTGGTGTGGGCCTTCCGATGTCCAGGTGCTCCCCCATACGAC
CACCACTTCCTCCTCATCCTCCTCCTCGTCCTCCTCCTCCTCGACTAAAGATTCTGGCGATGGCGGCAAGAAGAAGCAGC
AAGAAGGTGTAAAGAAGGAACAGGGGAAGGAGAAGAAGAGGAGCAACCTTGACCGGGCCGCCCTCACAACGCCCCGCCTC
CCCTTCCATTCTCGACCCGGTCTAATGTGACAGATTAGCCGAGAAC--CAGTGTATTTCATCGAAATATATGATCTTGTG
TGTTCTCCTATTAGCCTATGGCCGAGTCTGGAACTTAGGATGCATAGCTTCCATAGCTCCGTCGAAGTTTCGAGTTTTGT
AATTTTGCCACATGTTCTATTTATTCAGTGATGGGTTGGCTGTATCAAAATATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTTTCCATTGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCTCGCTTGACT
TAATTTACCAGATCAAACGAGCAAAGCTTAGCCTATTTCTTCCT---GCTAAAGGTGCGGGTGTGAGCAAGAACCAGGCA
AAAGCAAACGTAAATGTTGCACCC-AA-AAAATAGTAGAGAAGTCGAAATGAAATCATTTTACTTGGGGAAGTGCACTGA
TACAACCACACAGTTCCACTTTATTAACTTGAACATGAC-----------------------------------------
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>chr3A_1364
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----------------------------------------------------------CATAGAAATATATGATCTTGTG
TGTTCTCCTATTAGCCTACGTCTGAGTCTGTAACTTAGGATGTATAGCT-CCATTGTCCCGTTGAAGTTTCGAGGTTTGC
AGTGTGGCCACGTGTTCTATTTATTCATTGATGGGTTGGCTGTATCAGAATATCCAAATTGCAGGTGTGTTATAATAGAG
ATTTTGTCCATTGTCCATCAGGACAATATATTTTTCCCTACATATTTTGTTTGTTGGATTATCATTCCCCTTGCTTGACT
TAATTCACCAGCTCAAACGAGCAAAGCTTAGCTTATTTCTTCCTCCTGCTGAAGGTGGGGATGTGATCAAGAACCAGGCA
AAGGCAAAC-AAAATGTTACATCC--A-AAAATAGTAGAGAAGTCAAAATGAAAACATTATACTTGGGGAAGTGCACTGA
TACAACCGAACAGTTCTGCTTTATTAACTTGAACATGACTAAATGAAGTAGAAACAAATATTGTGACACATATTTAGATA
GGGA-ATGTGCACTATTTTGGGCCATATTGAACTGCAGAAATGATATGCTCTTTAGTAGAAAAAATTTCACCAACTTTTT
GTAGGTTATTTACAGGGCCACTGCAT-GGATTCGTACGTGGTCGTTACTCACTCATGCGGACTTCGAGGAGCTTTTGCCT
ACTGGGTGCAACCGCAGCTGGGAGATGGTAGCACGGATTATCTTCAACCAATTTGGATGGCAAACTAATAATTAATAGGC
TAGGTGTTTAGTCATTGTAGCCTATTCTTTCACCGGCTGTGGCATTTTCTATTTTATTTTGATTTGGCTACTTTTATGAG
CCAATACTGGACCTCATATTTTGTATTCTACTTTCGTTAGATAATATGGCTGCATGCATCACTTTGATGTATAGGCCGGG
GGCTATCCTCCTTTTCAAAAAAAA-CTTGAACATGACATGGACAAAGCCAAAAAAGGAATGGCCGACGA-TTTTTTTCCT
TGATTGGGGATTGATTGATGGTTAGGTAGATATTTTTCA
>SNPs
--SS-SSSSSSSS--S------S-------------S-------------------------------------------
-------------------------------S------------S---SSS----------S-S----------------
---S-------S---------------S-S---SS-----S------S--------------------------------
---------------S------S-------------S--S----S-S--------S------------------------
--S--S--------------SSSS------------------------S-S------------S----------------
----------------SS--------------------------------------------------------------
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--------------------S------------------------------------------SSSS-SS----------
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----------------------------------S----S-S--------------------------------------
-------------------------------------------------------------------------S------
------------------------------------------------------------------S-------------
-----------------------------------------------------------------S-SS--S--------
------------------------------S-----------------------------------------------S-
--S-------SSS-------------------------------------------------------------------
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-------------------------------S---------SS-SS----------------------------------
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---------S--------------S-------------------------S-----------------------------
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--------------------S--------------S--------------------------------------------
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------------------------S------------------------------------------------------S
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------------S-------------------------------------------------------------------
---------------S-----S----S----S----------------------------------S-------------
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-S----S-------------------------------------------S-----------------------------
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>forward_125
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-------------------------GGTGTTAATTTGGTCGCCCG-----------------------------------
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>reverse_4125
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--------------------------------------------AGGCTGAAGAGCAGAGTTAGC---------------
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>forward_3791
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-----------AGGAGAGAGAGGCCGTTGTA-------------------------------------------------
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>reverse_5136
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---------------TGCTGGCAGATAGTAGAACGG--------------------------------------------
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---------------------------------------
