>input_sequence_82185
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------------------------------------------------ATGAGAGAGATTGCCCAAGTTTTCAAGGTACT
TTTATGGGGCTCGCTTGATATACACTCGAATCCAGCTCAATCCCTTTC-AATAATATCCATGTATATAAGTCACGTTAGG
TGTTTCAATAAAACATCTCTAATGCAGTTTAATTGA-A-TAAGAAATATTTATGTTTATGATGCTTTCCTTTGGCTTTCT
TTGCTACATCTGTAGATTGATCTACGCTTCCAGAGCCATGCAGTGCTTGCTTTACAGGAGGCGGCAGAAACATACCTCGT
GGGACTGTTTGAGGACACCAATCTTTGTGCCGTCCATGCGAAGCGTGTGACCATAATGTCCAAAGATGTTCATTTGGCTA
GAAGGATCCGTGGTGAGAGGCTGTAA------------------------------------------------------
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>chr3D_1_TraesCS3D01G103100
TAAATATAAGTCTTTTTAGACATTTCAAATGGACTACAACATACAGATGTATGTAGACATATTTAAAAGTGTAGATTCAC
TTAGTTTGCTCCGTATGCAGTCACTTGTTGAAATCTCTGAAAAGACTTATATTTGGGAACAGAGGGAGTACATAGCAAAA
TGAGTGAATCTACATTCTAAAACATGTCTACATACATCTGTATGTTGTAGTCCATTTGAAACATTTAAAAGGACTTATAT
TTAGGAACGGAGAGAGTAGATGGTTTAGACCGTGATCCTATTACTGTGTTATTTGTGATATTTTCTACAAATGTTTTGCC
GTGTTATTCTGATCCTTTTGTTGTGTTGTTTTTCTACACCACATG-CAAAATATCCAATCCAAGGTGGGG----------
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---------------TATATTTCTAGTTGAGGTCTAAATATTTTGGCTTCTGCACACGTCCTAGAAACAACAAATTTTAG
GGGAGTGGGCGGTTACATTTGTTTTAGATGTCCTACAAAGGATGTGTTGCTATGCCATAATGT--TATTGCCA-TTTTTT
AACTTTTATGCATGACTCACTATTTTGTTTGCAGGATGGCTCGAACCAAGTGTACAACTCATAAGTCCACCGGAGGAAAG
GCTCCCACGAAGCACCTTAGGGCTTTCTATGTAATATTTCTTAGTGCTTATCTTTACTATTTGCATTACTACATAATA--
-CTGCAAAA-AAATATGTATCT--CACTTTTTATGTTATAGTTGT-----TAATTTATTTGACAATAACTT--TATTATT
G--TTTGCGATGATAGGCAGCCGCTCGTAAAACAGCTCTAGCAACTGGAGGAGCGAAGAAGCCCCGCAGATATCGTCCTA
GAACTATTGCTCTTCGGTATGTGCAACATATACAATCAGAGGACAT-----GTATTATTATTACAC--------------
------------------------GTTATGAGTTTCTTATCATTCATACACATGCTTTTGTAGTGACATTCGCAAGTATC
AGAAGGGTACCGAGATGCTGATAAGGAAACTACC-TTTTTAGAGGCTCATGAGAGAGATTGCCCAAGTTTTCAAGGTACT
TTTATGGGGCTCGCTTGATATACACTCGAATCCAGCTCAATCCCTTTC-AATAATATCCATGTATATAAGTCACGTTAGG
TGTTTCAATAAAACATCTCTAATGCAGTTTAATTGA-A-TAAGAAATATTTATGTTTATGATGCTTTCCTTTGGCTTTCT
TTGCTACATCTGTAGATTGATCTACGCTTCCAGAGCCATGCAGTGCTTGCTTTACAGGAGGCGGCAGAAACATACCTCGT
GGGACTGTTTGAGGACACCAATCTTTGTGCCGTCCATGCGAAGCGTGTGACCATAATGTCCAAAGATGTTCATTTGGCTA
GAAGGATCCGTGGTGAGAGGCTGTAATTCCTCTAAGCAGATGGATCAACCCCAACTTCATG-TTGCATGTTGCTTCCTAT
ATGATTTCCGGGTTTATGAAGAACAACATACAATATCTTTGATTTGCCATGGATGTTAAACTATTATTAGT-ATTAATAT
TAATATGGTTGGTTATATATACCAAC------------------------------------------------------
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-----------------ATAACAAATTGGCTTGCGCCAAAACCTTCT-AAATCTTAAGTGTGCTCTGTTGAACTATATAT
AT----ACTTCATATTGTAGCATATGGTGTGATGGTACTATCTCTATGGTTGCACTATTTTGTTTTTATACCTTATTTGG
CCCTCATTGAACTATGC--ATGGTTACTTAGCGTCTTGGAGGAGATCAACCTTTGCGTGCATGTTTAAGAGGCATGTCGT
TCCATCAACA----------------------------------------------------------------------
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---------TGCGTATCATACATGTTCCCGGGCTAATTAGAATCCAGCATGCATGGCCATCAACATGCTCCAAGGACG--
----TCTACTAGGGCCGGCCAGGCCATGTCTGGCACTCCTTATACATGTTTAGTTTTGGAAGAATTCAAGCCCATGTGCG
G-TGACAGTTGAAGACTTGAAACATAGGTTCTATTTTGAATTATATGGTTTGTCTTAAACAATTGATTATGT--------
-----ATCAAAAACCTTCAGTGGGCATGAAGAAACTCCCTCTTCGT----------------------------------
-------------------------------------------------------GGTGATGTCATGACCTGGTGGGCAC
AC----------CACATAAACCAGGTT-GGTCTAGCTGCTATTGGGGCAGTCTTTGGGAGGACACATGACGGCATCAAAA
AAATTAGTAGTGAGACATTTCTGTTCCATGTTCTTGATCTCTACTAAGACCAATGACAGACATAGCTTCGAC-ATCTTCT
TAACTTTGCCATATGCCGCTAATGTTGTGTTGAGCTGTATACATGTGTTAACATGATTCTCATTATTTTTTAGTAGA---
------------------------------------------------AAAACATTATATCGAGGACCATGCACCACCTA
TAATTGCAGATAA---TATTTGTGCAATTTTAGATTTAGAAATGAGCAATGGGCTAGTTGCACATTTCATTTTAATTCAT
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>chr3A_255
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--------------AGTAGCTGGCTTAGACCGTGATCCTTTTACTGTGTTATTTGTGATATTTTCTACAAATGTTTTGCC
GTGTTATTCTGATCCTTTTGCTGTGTTGTTTTTCTACACCACAGGTTAAAATATCCAATCCAA-----GGTGGAGTATAT
TTCTAGTTTTTTCGAAACGGAGGCAAAAGATTTGCCTCATTCATTAAATAAGAGAGAAGTGTTTTAGAGTGTTACAAATG
ATCCGTATGCCCGGCATGGCAACTACTCGCGCACAAGAATACACCCCAGTTTTTTAGCTCCCACGATAATCCAAACCTTG
ACGTCGTTGATGATAGCACGGAGAAGGGCCGGAGGCGGTGTGCTCTTGTGTCGGAAGACCCGAGCATTACGCTCGCTCCA
GATCGTCCAAGAGACTAGCACACCATAAGGCTATGGAACTCGGTCATCCTTGAATTTGGTCTAGCACACATGGACACCTC
CTCTTGGCATTTGGATGGATCCGTTTTGGAATGGTGGGAAAAGCGAACCTGCTTGCAAAACCCAAACCGACGAGCCCTGG
CCTCACTTACATTGCTATATTTCTAGTTGAAGTCTAAATATTTTGGCTTCTGCACATGTCCTAGAAACAACAAATTTTAG
GGGAGTGGGCGGTTACATTTGTTTCAGATGTCCTACAAAGGATGTGTTGCTATGCCATAATGT--TATTGTCATTTTTTA
AACTTTTATGCATGACTCACTATTTTGTTTGCAGGATGTCTCGAACCAAGTGTGCAGCTCGAAAGTCCACCAAAGGAAAG
GCTCCCACGAAGCACCTTAGGGCTTTCTATGTAATATTTCGTAGTGTTTGTCTTTACTATTTGCATTACTAAATAATAAT
ACTGCAAAA-AATACGATAGTTGTTAGTTTATATGTCATAGTTGT-----TAATTTGTTTGACAATAACTT--TATTATT
GGTTTTGCAATGATAAGCAGCAGCTCGTAAAACCGCTCCAGCAACTGGAGGAGTGAAGAAGCCCCGCAGATACCGTCTTT
GAACTGTTGCTATTCGGTATGTGCAACATATACA-TTTTAGGACA--TGTAGTATTATGATAACAC--------------
------------------------CTTGTGAGGTTCTTATCATTCATACATGTGCTTTTGTAGTGAAATTCGCAAGTATC
AGAAGGGTAGCGAGCTGCTCATAAGGAAACTACC-TTCTCAAAGGCTCGTGAGGGAGATTGCTCAAGTTTTCAAGGTACT
TTTGCAGGGCTTGCTTGACATACACTCGAATCTGGCGCGATCCCTTTCG-AAAATATCCATGTATATAAGTCACGTTAGG
TGTTTCAGAAAAAAATCTCTAATGCAGTTTAATTAA-A-TAATAAAAATTTCTCCTTATGATGCTTTTCTTTGGTCTTTT
GTGCTACATCTACAGATTGATCTTTGCTTCCAGAGCCATGCAATGCTTGCTTTACAGGAGGCGGCCGAAGCATACCTCTT
GGGACAGTTTGAGGACACCAATCTTTGTGCCGTCCATGCGAAGCGTGTGACCATAATGTCCAAAGATGTTCATCTGGCTA
GAAGGATCCGTAGCGAGAGGCTGTAATTCTCCTAAGCAGATGGATCAACCCCAACTTGCAACTTGCATGTTGCTTCCTAT
ATGATTTTCGGGTTTATCAAGAACAACAGACAACATCTTTGATTTGCTGTGGATGTTAAACTATTATTA-----------
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>chr3B_356
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-----------------------------------ACACAAGATG-TAAAGTATCCAATCCAA-----GG----------
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---------------TATATTTCTAGTTGAAGTCTCAATATTTGTCTTTCTACACACCTCCAAGAAACAACAGATTTTCG
GGGAGTGAGCGGTTACATTTGTTTCAGATGTACTACAATGGATATGTCGCTATGCTATAATAA--CATTGTGATTTTTAC
AACTTTTACGCAGTACTCACTGTTTTGTCTGCAGAATGGCTCGAAC-AAGTGTACGGCTCGTAAGTC--CCGGAGGAAAG
GCTCCCACGAAGAACCCTAGGGCTTTCTATGTAATATTTCTTAATGTTTATCTTTACTATTTGCATTACATAAGTCCA--
----------------------------CTGTATGGTATAGTTGT-----TTGTTTGTCTGACAATAACTT--AAGTATT
GATTTTGCAATGATAGTCAACCGCTCGTAAAACAACTCCAACAACTGGAGGAGTGAAGAAGCCCCACAGATATCATCATG
GAACTGTTGCTCTTCGGTATGTGCAACAGATACAACTTTGGGACA--TGTATTATTATTATTACAC--------------
------------------------CTTATGACGTTCTTATCATTCATACAAGTGTTTTTGTAGTGAAATTCGCAAGTATC
AAAAGGGCACCGAGCTGCTCATAAGGAAACTACC-TTTTTAGAGGCTCGTGGGGGAGATTGCTCAAGTTTTCAAGGTACT
TTTGTGGGGCTCGCTTCACATGCACTTGAATCCGGCTCAATCCCTTTCGAAAATGG-CCATGTATATAAGTCATGT----
-----------AAAATCTCTAATGCAGTCTAATTGAAA-TAAGAAATATTTATGCTTATGATGCTTTTGTTTTGCTTTCT
ATGCTATATCTACAGATTGATCTACGTTTCCAAAGCCATGCAGTGCTTGCTTTATAGGAGGCGGCAGAAGCATACCTTGT
GGGACTGTTTGAGGACACCAATCTTTGTGCCATCCGTGCGAAGCGTGTGACCATAATGTCCAAAGATGTTCATCTGGCTA
GAAGGATCCATGGTGAGAGGCTTTAATTCTTCTAAGCCGATGGATCAACCCCAACTTGCCACTTGCATGCTCCTTCCTAT
ATGATTGCCAGATTTATGAAG----ACAAACAACGTCTTTGATTTGCCATGGATGTTAAACCATTGTTAG-------TAT
TAATATAGTTGGTTATATATAATAGC------------------------------------------------------
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-----------------ACGACGAATTGGCTCGCGCCAAATCCTTCTGATATCTTAAGTGTGCTCTATTGAGCTATATAT
AT----ACTTTATATAGTAGCATATGGTGTCGTGGTACCAACTCTACGGCCGCACTATTTTCTTTTTATGCCT-T--TGT
ATATTATTGAACCATATATATGGTTAAATAGCATCTTGGAGGAGATCAACCTTTGCATGCATGTTTAAGAGGCACGTCGT
TCCATCAACA----------------------------------------------------------------------
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---------CGCGTATCATACATGTTCACGGGCTAATTAAAATCGAGCACACATGACCATCAGCATGCTCCAAGGACG--
----T---CTAGGGCCGGCCAAGCCATGTATGGCACTCCTTATGCATGTTTTGTTTTGGAAGAATTCATACCCAAGCGCA
GATGGTAGTTGAAGACTTGAAACATAGGTTTTAGTTG-AATTATGCCGTTTATTTTAAGCAGTTCATGCTGT--------
-----ATCAAAAACCTTCAGC-AGGATGAGGAAACTCCCTCTTC------------------------------------
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>chr3B_390
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---------------TATATTTCTAGTTGAAGTCTCAATAGTTTGGGTTCTACACACATCCTATAAACAACAAATTTTAG
GGGAGTGAGTGGTAACATCTGTTTCAGATGTCCTACAAAGGATATGTCAC--TGCTATAATTTTATAATGTGA-TTTTTT
TAATTTTATGCACAACTCACTATTTTGTTTGTAGGATGGTTCGAACCAAGTGTACGGCTCGCAAGAACACCGGAGGAAAG
GCTCCTCCAAAGCACCTTAGGGCTTTCTATGTAATATTTCTTAATGTTTATGTTTACTATTTGCATTACTACATAATA-T
ACTGCAAAA-TATATATGATATACCCCTATGTATGTTGTAGCTGA-----TTATTTGTTTGAAAATAACTT--AATTGTT
GGTTTTGCAATGATAGTCAGTCGCTCGTAAAACAGCTCCAGCAACT-GAGGAGTGAAGAAGCCCCGCAGATATCGTCCTG
GAACTGTTGCTCTTCGGTACGTGCAACATATACAATTTTAAGACA--TGTATTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATTATTATTATTATTATAAGGTTCTTATCATTCATACACGTGCTTTTGTAGTGAAATTCACAAGTATC
AGAAGGGGACCGAGTTGCTCATAAGGAAACTACC-TTTTCAGAGGCTGGTGAGGGAGATTGCTCAAGTTTTCAAGGTACT
TTTGTGGGGCTTTCTTGACATACACTCGAATCTAGCTCAATCCCTTTTAAAAAAAATCCATGTATATAAGTCGCTTTAGG
TGTTTTCAAAAAAAATCTCTAATACTGTTTAATTGAAA-TAAGAAATATTTATGCTTACGGTGCTTTTCTTTGGTTTTCC
GTGCTACATCTACAGATTGATCTACGCTTCCAGAGCCATGCAGTGCTTGCTTTACAAGAGGCGGCGGAAGAATACCTCGT
GGGACTGTTTGAGGACACCAATCTTTGTGCGGTCCATGTGAAGCGTGTGACCGTAATGTCCAAAGACGTTCATCTACCTA
GAAGGATCCCTGGCGAGTGGCTGTAATTCTTCTAAGTCGATGGATCAACCCCAACTTGCAACTTTCATGCTACCTCCTAT
ATGATTTCCGGGTT-ATGAAGAACAATAGACAAAGTCTTTG---------------------------------------
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>chr3D_533
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-ACTTTTATGCATGATTTGCTATATTGTTTGCAGGATGGCTCGAACCAAGTGTACAGCTCGTAACTCCACTGGAGGGAAG
GCTCCTACCAAGAACCTTAGGGCTTTCTATGTAATATTTCTCAGTTCTTATCTTTGCTATTTACATTACTACATATAA-T
ACCGCGCTACTATATGATCCAAACCACTCTGTATGTTAGAGTTGTTACTATAATTTATTTGACAATAAATCAAAATTATT
TGTTTTGCGACGAGAGGCTGCCGCTCGTAAAACAGCTCCAGCAATTGGAGGAGTCAAGAAGCCCCGCAGATATCGCCCTG
GAACTGTTGCTCTTCGGTATGTGCAACATATATAATTCCAGAATATGTGTATTATTATTAGTGTGC--------------
------------------------CTTGTGAGGTTCTTGTCATTCATACAAGTGCTCTTGTAGTGAAATTCGCAAGTATC
AGAAGGGCACCGAGTTGCTCATAAAGAAGCTACC-TTTTCAAAGGCTCGTCAGGGAGATTGCTCAAGTTTTCAAGGTAC-
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>chr3D_598
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------------------------------------------------------------------CCACCGGAGGAAAG
GCTCCCACAAAGCACCTTAGGGCTTTCTATGTAATATTTCTTAGTGTTTAACTTTACTATTTGCATTACTACGTAATA--
-CTGCAAAA-AA-GTTGAT-----CACTTTGTATGTTATAGTTGT-----TAATTTATTTGACAATAACTT--TATTATC
GGTTTTGCGATGATAGGCAGCCGCTCGTAAAACAGCTCCAGCTACTGGAGGAGTGAAGAAGCCCCGCAGATATCGTCTTG
GAACTATTGCTCTTCGGTATGTGCAACATATACAATTATAGGAAAT-----GTATTATTATTACAC--------------
------------------------ATTATGAGGTTCTTATCATTCATACACCTGCTTTTGTAGTGAA--TCGCAAGTATC
AGAAGGGTACCGAGCTGCTCATAAGGAAACTACCTTTTTCAGAGGCTCGTGAGGGAGATTGCTCAAGTTTTCAAGGTAAT
TTTATGGGGCTCGGTTGACATACACTGGAATCAGGCTCAATCTCTTAT-AAAAATATCCATGTATATAGGTCACGTTAGG
TGTTTCAGAAAAAAATCTCTAATGCAGTTTAATTGA-A-TAAGAAATATTTATGCTTACGATGCTTTTCTTTGGCTTT--
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>chr3D_598
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------------------------------------------------------------------CCACCGGAGGAAAG
GCTCCCACAAAGCACCTTAGGGCTTTCTATGTAATATTTCTTAGTGTTTAACTTTACTATTTGCATTATTACGTAATA--
-CTGCAAAA-AAAGTTGAT-----CACTTTGTATGTTATAGTTGT-----TAATTTATTTGACAATAACTT--TATTATC
GGTTTTGCGATGATAGGCAGCCGCTCGTAAAACAGCTCCAGCTACTGGAGGAGTGAAGAAGCCCCGCAGATATCGTCTTG
GAACTATTGCTCTTCGGTATGTGCAACATATACAATTATAGGAAAT-----GTATTATTATTACAC--------------
------------------------ATTATGAGGTTCTTATCATTCATACACCTGCTTTTGTAGTGAA--TCGCAAGTATC
AGAAGGGTACCGAGCTGCTCATAAGGAAACTACCTTTTTCAGAGGCTTGTGAGGGAGATTGCTCAAGTTTTCAAGGTAAT
TTTATGGGGCTCGGTTGACATACACTGGAATCAGGCTCAATCTCTTAT-AAAAATATCCATGTATATAGGTCACGTTAGG
TGTTTCAGAAAAAAATCTCTAATGCAGTTTAATTGA-A-TAAGAAATATTTATGCTTACGATGCTTTTCTTTGGCTTTAT
GTGCTACATCTACAGATTGGTCAACGCTTCCAGAGCCATGCAGTGCTTGCTTTACAAGAGGCGGCAGAAAAATACCTCAT
GGGATTGTTTGAGGACACCAATCTTTGTGCCGTCCATGCGAAGCGTGTGACCATAATGTCCAAAGACGTTCATCTGGCTA
GAAGGATCCGTTGCGAGAGGTTGTAATTCGTATAAGCAGATGGATC-ACCCCAACTTGCAACTTGCATGTTGCTTCCTAT
ATGATTTCCAGGTTTATGAAGAACAACAAACAACGTCTTTGATTTGCCACGGATGTTAAACTAATAATAATAATAATAAT
AATTATAGTTGGTTATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTATACCAAATTGACTTGTGCCAAAATCTTATAAAATCTTAAGTGTGCTCTGTTGAACTGTATAT
AT-----CTTAATATAGTAGCATATGGTGTGGTGGTACTATCTCTATGGCTGCACTATTTCCTTCTTATACCT-A--TGT
CTATTATTGAACTATGC--ATGGTTACTTAGCATCTTGGAGGAGATCAACCTTCGCATGCATGTTTAAAAGGAACGTCGT
TCCATCAACA----------------------------------------------------------------------
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---------TGTGTATCATACATGTTGACAGGCTAATTAAAATCGAGCAGGCATGGCCATCAGCATGCTCCAAGGACCAA
GACAT---CTAGGGTTGGCCAAGCCATGTATGGCACTCCTTATGCATGTTTAGTTTTGGAAGAATTCATGCCCATGTGCG
G-TGACAGTTGAAGACTTGAAACATATGTTCTATTTTGAATTATAAGGTTTGTCTTAAACAAATCAAAAGGTTTGTATTA
AACAAATCAAAAACCTTAAGTGGACATGAAGAAACTCCCTCTTAGCCTAATGATGATGCATGCCGGCAATTGCTGTGGGG
GAAGTTGCTGATGATGGCGATGACATTGGTCTGGCCGAGGATGCACTTG-----GGGTGATGTCATGACCTAGTGGGCAC
GTCAATGGTGTGCACATAAACCAGGTT-GGTCTAGCTGGTATTGAGGCAGTCTTTGGGAGGACACATGACAGCATCAAAT
TAATCAGTAGTGAGACATTTTTGTTCCATGTTCTTGATTTCTACTAAGATCAATGACGACCATAGCTTTGATA--TTTTT
TAACTTCGCCATATGCCACTAATGTTGTGTTGAGTTGTATACATGTGTTACCATGATTCTTATGGTTTTTTAAAATGGAT
CGGAATCTATTATAAAGGTACATAAAAAATAGAACATTTCAAACATACAAAACATTATATCGAGGACCATGCACCAGCTA
CAATTGCAGATAATATTATTTGTGCAATTTTTTATTTAGAAATGTGCAATGGGCTAGTT-CACATTCCATTTCAATTTCA
T
>chr3D_746
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-----------------------------------------------------------------TAATTT--TATTATT
GGTTTTGCGATGATAGGCAGCCACTCGTAAAACAGCTCCAGCAACTGGAGGAGTGAAGAAGCCCCGCAGATATCGTCATG
GAACTGTTGCTCTCCGGTATGTGCAACATATACAATCAGAGGACGT-----GTATTATTATTACAC--------------
------------------------ATTATGAGGTTCTTATCATTCATGCACGTGCTTTGGTAGTGAAATACGCAAGTATC
AGAAGGGGGCCGAGCTGCTGATAAGGAAACTACC-TTTTCAGAGGCTCGTGAGGGAGATTGGTCAAGTTTTCAAGGTACT
TTTGTGGGGCTTGTTTGACATACACTGGAATCCAGCTCAATCCCTTTC-AAAAATATGCATGTATATAAGTTGCGTTAGG
TGTTTCAG--AAAAATCTCTAATGCAGTTTAATTGA-AATAACAAATATTTATGCTTACGATGTTTTTCTTTGGCTTTCT
GTGCTACATCTACGGATTGATCTACGCTTCCAGAGCCATGCAGTGCTTGCTTTACAAGAGGCGGCAGAAGCATATCTCGT
CAGACTGTTTGAGGACACCAATCTTTGTGCGGTCCATGCGAAGCGCGTGACCATAATGTCCAAAGACATTCATCTAGCTA
GAAGGATCCATGGTGAGAGGTTCTAATTCATCTAAGCAGATGGATCCTCCCCAACTTGCAACTTGCATGCTGCTTCCTAT
ATGATTTC-------------------------CGTCTTTGATTCGCCATGGATGTTAAACTATTATTAGCAG----TAT
TAATATTGCTGCTAATATATAATAGC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ATAACGAATTGGTTCCCACCAAAACCTTCTAAAATCTTAAGTGTGCTCCATTGAACTATATAT
ATATATACTTCATATAGTAGCATATGGTGTGGTTGTACTATCTCTATGGCTGTACTATTTCCTTTTTATACCT-ATATGT
CTGTTATTGAACCATGT--ATGGTTAGTTAGCATCTTGGAGGAGATCAACCTTTGCATGCATGTTTAAGAGGCACATCAT
TGCATCAACA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------CGCGTATCATACATGTTCACGGTCTAATTAAAATCTAGCACACATGGCTATCAACATAGTCTAAGGACG--
----T---CTAGGGCCGGCCAAGCCATGTATGGCACTCCTTATG-ATGTTTAATTTTGGAAGAATTCATGCCCATGCGTT
G-TGACAGTTGAAAACTTGAAACAGATGTCCTATTTGGAATTATACCGTTTGTCTTAAAGAAGTCATGCTAT--------
-----ATCAAGAACCTTTAGCGGGCATGAAGAAACTCCCTCTTCGCCGGATGACGTTGCATGCCGGCAATTGTTGTGGCG
GAAGTTGCTCATGATGGCAAGGACATTGGTGTGGCCGAGGTTGCGCTTCTAACGGGGTGATGGCATGACCTCGTGGGCAC
GTCAATGGTGTGCACATAAACCATGATAGGTCTAGTTGGTACTAATGCAGTCTTTGGGAGGACACATGAGGACATC-AAA
AAGTTAGTAGTGAGCCCTTTTTGTTTCATGTTCTTGATCTCTACTAAGAGCAATGACAACCATAGCTTCGAAGTTTTTTT
TAACTTCGCCATATGCCACTAATGTTGTGTTGAACTGTACACATGGGTTACAATGATTCTCATGTTTTTTTAAAATGGAT
CTGAATTTATAATAAAGGTCCATAAAAAATAGGACACTTCAAACATACAGAATATTACATTGAGGACCATGCACCACCTA
CAATTGCAGATAATATT---TGTGCAATTTTAGATTTAGAAATGTGCAATGGGCTAGTTGCACTTTCCATTTTGATTTCA
T
>chr3A_1523
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---------------TATATACTAGC------------------------------------------------------
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-----------------ATAACAAATTGGCTTGCGCCAAAACCTTCTAAAATCTTAAGTGTGTCGTGTTGAAC------T
ATATATACTTCATATAGTAGCATATGGTGTGGTGGTACTATATCTATGGCAGCACTATTTCCTTTTTATACCT-ATATGT
CTGTTATTGAACTATGC--ATGGTTACTTAGCATTTTGGAGGAGATCAACCTTTGCATGCATGTTTAAGAGGCACATCGT
TCCATTAACACCCGGTGGCCGTTTGGATCTCTCGCCCGCAGCAACCCTGCCAAAACAGCGGCACGCCAATTTTCTGGCGG
AGCAATTCGCCGCCAGCGAAACGCCCGCGTGTGGGCGCAAATCCTAAAGAGGCTACCTAAAAGTTGGCTATGAACCCAAA
AAACTGATTGCCATCCAAAGTCACTCCAACCATGCGGGTCAATGCCAATATTTTGGAGGGGAGGGCGGCGGTTGCCATCC
AAACAGCCCCACGTATCATACATGTTCACGGGCTAAGTAAAATCAAGCACACATGGCCATCAACATGCTCCAAGGACG--
----T---CTAGGGCCGGCCAATCCACGTACATTACTCCTTATGCATGTTTAGTTTTGAGAGAATTCATGCCCATGTGTG
G-TGATAGTCGAAGACTTGAAACATAGGTTCTATTTTGAATTATACGGCTTATCTTAAGCAATTAATGATGT--------
-----GCCAAAAATTATTAGCGAGCATGAAGAAACTCGCTCTTCGCTGGATGCTGCTGCATGCCGGCAATTGCTATGGGG
GAAGTTGCTGATGATGGCAACGACATTGTTGTGCCCCAGGATGCGCTTCTGGCAGGGTGATGTCATGACTTGGTGGGCAC
GTCAAAGGTGTGGACATAAACCAGGTT-GGTCTAGCTAGTATTGAGGCAATCTCTCGAAGGACACATGACGGCA-C-AAA
AAATCAGTAGTGAAACATTTTTGTTCCATATTCGA----------AAGATCAATGATTGCCATAACTTCGAC-TTTTTTT
TAACTTTGCCATATGCCGCTAATGTTGTGTTGAGCTGTATAAATGTGTTACCATGATTATCATGGTTTCTTA--------
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-
>chr3D_1731
TGTTTAAG------------------------------------------------------------------------
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-------------------------------------------------------------------AGAGGCACATCGT
TTCATCAACA----------------------------------------------------------------------
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---------CACGTATCATACATGTTCATGGGCTAATTAAAAAAGAGCACGCATGGCCATCAGCATGCTCCAAGGACG--
----T---CTACGGCCGGCCAATCCATGTATATCACTCCTTATGCATGTTTAGTTTTGAAAGAATTCATGCCCATGTGTG
G-TGATAGTGGAAGACTTGAAACATAGGTTCTATTTTGAATTATCCGGTTTATCTTAAACAATTCGTGATGT--------
-----GTCAAAAATCTTTAGTGGGCACGAAGAAACTCCCTCTTCGCCGGATTCTGCTGCAT-CCGGCAATTGCTCTGGGG
GAAGTTGCTGATGATGGCAACGACATTGTTGTGCCCCAGGATGCGCTTCTGGCAGGGTGATGTCATGACTTGGTGAGCAC
GTCAAAGGTGTGCACATAAACCAGGTT-GGTCTAGCTAGTATTGAGGCAATCTCTCGAAGGACACATGACGGCA-C-AAA
AAATAAGTAGTGAGACATTTTTGTTCCATATTCGA----------AAGATCAATGACTGCCATAGCTTTGAC-GTTTTTT
TAACTTTGCCATATGCCGCTAATGTTGTGTTGAGCTGTATAAATGTGTTACCATGATTCTCATGGCTTTTTA--------
--------------------------------------------------------------------------------
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-
>SNPs
-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----S---S---------------S----------------------------------------
--------------------S-------------------------S----------------SSSSS------------
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------------------------------S-------------------------------------------------
------------------------S---------------------------------------------S---------
--------------------------------------------------------S---S-------------------
--------------------------------------------------------------------------------
-------------SS-----S---------S-------------------------------------------------
--------------------------------------S--------------S-------------------------S
--------------------------------------------------------------------------------
------------------------S-------S------------------S--------------S-------------
--------------S---------------------------------S----S--------S-----------------
------------------S--------------------------------S----------------------------
--------S----S----------------------------------------S------------S------------
S----------SS-------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------S---------------------------SSSS-------------------
----------------------------S----S----------------------------------------S-S---
------S---------------S-S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S---------------S-----------------S-----------S-----------S--S--S
-SS-S---------------------------S-----------------------S-----------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------S----S----S------------------------------
-----SSS-------------S-------S-------------S------------------------S-----------
---------------------------------------------S------------------S--S------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
SS------------------------------------S-----S-----------------------------------
--------------------S----------------------------S---------S-------------S-S--S-
--------------------------------------------------S------------SS-------SS-SS---
--------------------------------------------------------------------------------
S-------------------------------------------S---------------------S----------SSS
-
>forward_1254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCTCTAGCAACTGGAGGAGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_2765
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAGCATGCATGGCCATCAAC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
