>input_sequence_82119
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---------------------------ATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTGGAGAGGGA
CCAGAGCCTGCGGGCGGGGCTGCTCGTCGACGGCGGCAGCGGCGAGGCGGCGGCGGTGCCCAAGGGGTACTTTGCGGTGT
ACGTGGGCGCCGAGGCGCGGCGGTTCGTGGTGCCGATGGGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCTG
GCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCGC
CGCGCTCGAGGCCACGGCCGAGTCGCGCCAGCGCAGGCGGAGCGCCGCCGGCAGGAGGAGCAGGAGCAACGCCACACCAT
GGTGA---------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G104400
TTTCACAAACCAAAGATGCCTTGAAAGCGAACTTTATGATACAATAGCGGTTTGTGCATTGTTTTCTCATTATTTTATGC
ATGAGAGGGAACGTGTGTACTACTA---GTATGGTTAACTTAGGCAGAAGCTAGTTAATTAATTGAAGTGTATTGGGTGC
A-------------------------------CACAC--CTTAACTCTCCAGATCTGTGGTTATTTAGACTGAAATTAAC
CAGCTAACATTAGTCGGTGAATTTAAAAGCAGTTGCATATTTTACTCCCTTTCTGAAAGATGGGTTCTTCTAAAAAAAAC
GGACTACCGCTCAAACAGCAAAACTGGTGGAAGAACAGCTAGTACACTAGTACAGCTATACAGCTAATTGACTCGTTCAT
TCCATATAACAAATAAATGAAGATAAGACGTGTAACCGTATCACCGTCCCCTACATGCATGGATCCAAGCCCCTAACCAA
AACCATTGGAGAAAAACACATATGAACACACGCCATTCCCTTGACCTACTCCACA--TACGCTTTCATTACACTGTCAAT
GGCAGCCAGCTGAACATTTGCACAATAATCAAGAAACCATACCCATCCAAGAGAAATAATACAGTAGCTTTTTTGGGTAA
AGAAGAGAAATAATAGATGATATGTGCACAACAATAAGATATTCTCCATAATAATATATTCCATGTGTGTTGTTTATAAC
ATATTCTCCAAGAGTAGAATAAGATATGAGCCTTGCTGCAAGGCTGCTCCAGCTATGCCAAAGGCAGGAGGCTCCAAGAA
CAAGAGCCGCCCTTTGTCTCCAACCCCAACCACC----------CCGCCCATAATATACAACCGCCCTCGCAAGAACCAC
CAGACCTCACATGCTTTGATCCCTCCCCCT---------------TCCTCCTCCTCCTCCTCTTAACCTCCCCCGCCGCA
GCCCGTGCTCTCCCGTACTTCTTGGAGCCGATCATCGCAAGATCATCAACCAGCTGCCACTCTTC----GCCGTTTCTTT
GGCACCACACCACCGCCGATCGCCGAGATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTGGAGAGGGA
CCAGAGCCTGCGGGCGGGGCTGCTCGTCGACGGCGGCAGCGGCGAGGCGGCGGCGGTGCCCAAGGGGTACTTTGCGGTGT
ACGTGGGCGCCGAGGCGCGGCGGTTCGTGGTGCCGATGGGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCTG
GCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCGC
CGCGCTCGAGGCCACGGCCGAGTCGCGCCAGCGCAGGCGGAGCGCCGCCGGCAGGAGGAGCAGGAGCAACGCCACACCAT
GGTGATTGATCATGCTCGTGCATGGCGACGTAGAACAAGAGTTTTTTGTCCCGGTCATGTGGAAGGACGCCGTGTCTTTG
CGTAGCGCAAGCATGGCTGCCGCCGATGATCCGTCCGATTTCCGAGTCACCAATTCACCATCGGTTTGCCAGTAGATAGA
TAGTCTCTCACGAGT--CTCGAGTCTGGAATGATTAATGATGATCTTGTAA--GGGCTCTTCCTTTTTGTTTTCGAGCAA
CATCGATCTTGTAAGGGCTCTGAAACTGACAATTGAAAGATGATTTTGATTCCCATGATACATGGCTGCATCCTCATATT
CCTCCAGCTGATCAGAAGATTTGAGCCAGATATTGTTCTCCAGAAATTAAGGG-TTTTTTTTCTTTACAATTAAATAGGT
GTCCTCTTATTTATGTCTACTCAAATATGAACAGCCTGTATCCAAATGGAATCTCCTGCTAGCATTCTGCAAGCTGGAGA
AGCTGCACTCACATATATTCTGGTTATCTGTTTAGAATGTTCCTCAAAATTGCTATAACATGCACCTAGCATGTTCTATT
AATATCTAAGAAGATACTTGCAGCTGGGACAAATGAAACAGGTGGCACAATTAACCGCATAATTCCTGGGAGAGAAG-AC
TTCTCCTTCTTTTACTGTTTTTTTCCTCGAAAAACCAAGAGAAACACAACCTTCTAATCTTCTGTTTATGAAGAGCTAGC
CCCCACACTAACCTATTTATTTCAACATGAAAGCATGCCACATCAGCATGCGACATGCATGA-AAAAAAACTCACCTCAA
CATCCAATCATGCAGAAAAAAGTTCA------------------------------------------------------
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-------------------------------------------CCTCACTTTGCAAACATGTGCATGAGAATTTACATTC
TACTCCCTCTGTAAACTAATATAAGAGCGTTTAGATTACTATTTTAGTGATCTAAACGCTCTTATATTAGTTTACAGAGG
GAGTATTATGCTATTTATATTTAATAAATGTTTTACAACTATACAATGATCAAACACAATAAATCATAT
>chr6A_1
TTTCACAAACCAAAGATGCTTTGAAAGTGAACTTTATGATACAATAGCGCTTTGTGCATTGTTTTCTCATTATTTTATGT
ATGAGAGG----GTGTGTACTACTA---GTATGGTTAACTTAGGCAGAAGCTAGTTAATTAATTGAAGTGTATTGGGTAC
A-------------------------------CACACGCCTTAACTCTACAGATCTGCGGTTAATTAGACTGAAATTAAC
CAGCTAACACTAGTCGGTGAATTTAAAAACAGATGCATA-TTTTCCCCCTTTATGAAAGATGGATTCTTCTAAAAAAAAC
GGACTACCGCTCAAACAGCAGAACTGGTGGAAGAACAGCTAGTACACTGGTACAGCTATACAGCTAATTGACTCGTTCA-
TCCATATAACAAATAAATGAAGATAAGACGTGTAACCATATCACCGTCCCCTACATG----GATCCAAGTCCCTAACCAA
AACCATTGAAGAAAAGCACATATGAACACACGCCATTCCATTGACCCACTCCACA--TACGCTTTCATTACACTGCCAAT
GACAGCCAGCTGAACATTTGAGCAATAATCAAGAAAGCATACCCGTCCAAGAGAAATAATACAGTAGCTT-TTTGGGTAA
AGAAGAGAAATAATAGCTGATATGTGCACAATAGTAAGATATTCTCCATAATAATATATTCCATGTGTGTTGTTTATAAC
ATATTCTCCAAGAGTAGAATAAGATATGAGCCTTGCTGCAAGGCTGCTCCAGCTATGCCAAAGGCAGGAGGCTCCAAGAA
CAAGAGCCGCCCGTTGTTTCCAACCCCAACCACCCCACCCCACCCCGCCCATAATATACGCCCGCCCTCGCAAGAACACC
CAGACCTCACATGCTTTGATCCCTCACCCT---------------TCCTCCTCCTCCTCCTCTTAACCTCCTCCGCCGCA
GCCCGTGCTCTCCCGTACTTCTTGGAGCCGATCATCGCAAGGTCGACCAACCA--GCCACTCTTC----ACCGTTTCTTT
GGCGCCACACCACCGCCGGTCGCCGAGATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTAGAGAGGGA
CCAGAGCCTGCGGGCGGGGCTGCTCGTCGACGGAGGCAGCGGCGAGGCGGCGGCGGTGCCCAAGGGGTACTTCGCGGTGT
ACGTGGGCGCGGAGGCGCGGCGGTTCGTGGTGCCGATGAGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCTG
GCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCGC
CGCACTCGAGGCCACGGCCGAGTCGCGCCAGCGCCGGCGGAGCGCCGCCGGCAGGAAGAGCAGGAGCAACGCCACACCAT
GGTGATTGATCATGCTCATGCATGGCGACGTAGAAGAAGAGTTTTTTGTCCCGGTCATGTGGATGGACGCCGTGTCTTTG
CGTAGCGCGAGCATGGCCGTCGCCGATGATCCGTCCGATTTCCGAA--------TCACCATTGGTTTGCTAGTAGATAGA
TAATCTCTCACTCGTGTCTGGACTCTG----GAATAACGATGATCTTGTAAAGGGGCCCTTCTTTTTTGTTTTCGAGCAA
CATCGATCTTGTAAGGGCTCTGAAACTGACAATTGAAAGATGATTTTGATTTCCATGATACATGCATGCATCCTCATGTT
CCTCCAGCTGATCAGAAGATTTGAGCCAGATATTGTTCTCCAGAAATTGTGTTTTTATTTTTCTTTACAATTAAAAAGGT
GTCCT----TTTATGTCTACTCAAATATGAACAGCCTGTATCCAAATGGAATCTCCTGCTAGCATTCTGCAAGCTGGAGA
AGCTGCACTCACATATATTCTGGTTATCTGTTTAGAATGTTCCTCAAAATTGCTATAACATGCACCTAGCATGTTCTATT
GATATCTAAGAAGATACTTGCAGCTGGGACAACTGAAACAGGTGGCACAATTAACCCCATAATTCCTGGGAGAGAGGAAC
TTCTCCTCCTTTTACTGTTTTTTTCCTCAAAAAACTAGGAGAAACACTACCTTCTAATCTTGTGTATATGAATAGCTAG-
CCCCACACTAACCTATTTATCTCAATATGCATGCATGCCACATCAGCATGCGACTTGCATGGT-AAAAAACTCACCTCAA
CATCCAATCATGCGGGAAAAAGTTCA------------------------------------------------------
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-------------------------------------------CCTCACTCTGCAAACATGTGCATGAGAATTTACATTC
T-------------------------------------------------------------------------------
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>chr6B_1
TTTCACAAACCAAAGATGCTTTGAAAGTGAACTTCATGATACAATAGCGGTTTGTGCATTGTTTTCTCATTATTT-ATGC
ATGAGAGGGAACGTGTGTACTACTACTAGTATGGTTAACT------GAAGCTAGTTAATTAATTGAAGTGTATTGGGTAC
ACCGTACACACGCCTTTTTTTTGCGGAAAGTACACACGCCTTAACTCTACAGATCTGCGGTTAATTAGACTGCAATTAAC
CAGCTAACATTAGTCGGTGAATTTAAAAGCAGATGCATA-TTTTCTCCCTTTCTGAAAGATGGATTCTTCTAAAAAAAAC
GGACTACCGCTCAAACAGAAGAACTGGTGGAAGAACAGCTAGTACACTGGTACAGCTGTACAGCTAATTGACTCGTTCAT
TCCATATAACAAATAAATGAAGATAAGACGTGTAACCGTATCACCGTACCCTACATG----GATCCAAGTCCCTAACCAA
AACCATTGGAGAAAAACACATATGAACACACGCCATTCCATTGACCTACTCCACACATACGCCTTCATTACACTGTCAAT
GACAGCCAGCTGAACATTTGTACAATAATCAAGAAAGCATACCCATCCAAGAGAAATCATAATAATAGCTTTTTGCGTAA
AGTAGAGAAATAATAGCTGATATGTGCACAATAATAAGATATTCTCCATAAAAATATATTCCATGTGTGGTGTTTATAAC
ATATTCTCCAAGAGTAGAATAAGATATGAGCCTTGCTGCAAGGCTGCTCCAGCTATGCCAAAGGCAGGAGGCTCCAAGAA
CAAGAGCCGCCCTTTGTCTCCAACCCCAACGACCCCACCCCGC----CCCATAATATACACCCGCCATCGCAAGAACCAC
CACACCTCACATGCTTTGATCCCTCCCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTAACCTCCTCCGCCGCA
GCCCGTGCTCTCCCGTACTTCTTGGAGCCGATCATCG--------ACCAACCA--GCCACTCTCCCCCGGCCGTTTCTTT
GGCACCACACCACCGCCGATCGCCGAGATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTGGAGAGGGA
CCAGAGCCTGCGGGCGGGGCTGCTCGTCGATGGCGGCAGCGGCGAGGCCGCGGCCGTTCCCAAGGGGTACTTCGCGGTGT
ACGTGGGCGCGGAGGCGCGGCGGTTCGTGGTGCCGATGGGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCTG
GCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCGC
CGCGCTCGAGGCCACGGCCGAGTCGCGCCAGCGCAGGCGGAGCGCGGCCGGCAGGAAGAGCAGGAGCAACGCCACACCAT
GGTGATTGATCAAGCTCATGCATGGTGACGTAGAAGAAGAGTTTTTTGTCCCGGTCATGTGGAAGGACGCCTTGTCTTTG
CGTAAGGCGAGCATGGCTGTCGCCGATGATCCGTCCGATTTCCGAGTCACCAATTCACCATCGGTTTGCCAGTAGATAGA
TAGC-------------CTCGAGTCTG----GAATAATTAATGAT-----------------------------------
----GATCTTGTAAGGGCTCTGGAACTGACAGTTCAAAGATGATTTTGATTCCCATGATACATGCATGCATCCTCATGTT
CCTCCAGCTGATCAGAAGATTTGAGCCAGATATTGTTCTCCAGAAATTATGTTTTTATTTTTCTTTACAATTAAAAAGGT
GTCCTCTTATTTATGTCTACTCAAATATGAACAGCCTGTATCCAAATGGAATCTCCTGCTAGCATTCTGCAAGCTGGAGA
AGCTGCACTCACATATATTCTGGTTATCTGTTTAGAATGTTCCTCAAAATTGCTATAACATGCACCTAGCATGTTCTATT
AATATCTAAGATACTTGCAGCAGCTGGGACAACTGAAACTGGTGGCATAATTAACACCATAATTCCTGGGAGAGAGG-AC
TTCTCCTCCTTTTACTGTTTTTCTTTTCCAAAAACCAGGAGAAACACAACCTTCT--------GTACATGAATAGCTAGT
CCCCACACTAACCTATTTATGTCAATATGCAATCATGCCACATCAGCATGCGACGTGCATGGGAAAAAAACTCACCTCAA
CATCCAATCATGCAGAAAAAAGTTCACCTCACTATGCAAATATGTGCATGAGAATTTACATTTTGTTATGCTATTTATAT
TTAATAGATGTTTTACAACTATACTATGATCAAACACAATAAATCATATGTAGTTTTAGTTTTACTTCTCATATTATTAC
TCAAAATATCCATGTACCATATATGCACGTAAATATCGCTAAAATATGTTTTATGTTCTATATGTAAAACACAATAAATG
TTCTATATCTAACCTCAATATCCAATCATGAGGAAAAAGTTCGCCTCACTTTGCAAACATGTGCATGAGAATTTACATTC
T-------------------------------------------------------------------------------
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>SNPs
-------------------S-------S----------------------------------------------------
------------------------------------------------------------------------------S-
------------------------------------------------S--------S-----S----------------
--------------------------------S------S---S-------------------S----------------
--------------------S---------------------------S-------------------------------
---------------------------------------------------------SSSS--------S----------
---------------------------------------S----------------------------------------
-S------------------S---------------S-------------------------------------------
----------------S--------------S------------------------------------------------
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------------------------------------------------------------S-------------------
-----------------------------------------------------------------------S--------
-----------------------------------------S--SS-S-S-SSSS-------------------------
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------------------------------------------------------------------------S-------
----------S---------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
-----------------S-----------------S--------------------------------------------
--------S----------S------------------------------------------------------------
-----------SS--------------SSSS--S-----------------------S----S-----------------
----------------------------------------------------------------SS-----------S--
-------------------------------------------------S-SS---S------------------S----
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--------------------------------S-----------------------S------------------S----
-------S--------------------S--------S-----------------------S---S------S------S
--------------------S----S---S------------------------S------S------------------
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-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_461
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-----------------------------------------CACCGTCCCCTACATGCATG-------------------
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>reverse_2153
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------------------------------------------------------------------------GAGCTAGC
CCCCACACTAAC--------------------------------------------------------------------
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