>input_sequence_82112
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------------------------------------------------------------------------ATGGCGGA
CGACGGCGCTGAGGCGTACGAGGACCTGCTGCCGGTGATGGCGGGGCGGCTGGGCACGGCGGGGCTGCTGTCGGAGCTGC
GGGCCGGGTTCCGGCTGCTGGCCGACCCGGCGCGGGGCGCCATCACGGCCGAGAGCCTGCGGCGGAGCGCGGGGGCCGTG
CTGGGCGTGGAGGGGATGACGGCCGAGGAGGCGCAGGTGATGGTGGGCGAGGGCGACCACGACGGCGACGGCGCGCTCAG
CGAGCAGGAGTTCTGCGTGCTCATGGTGCGGCTCAGCCCCGGCATCATGGCCGACGCCGAGGGCTGGCTCGAGGAGGCCA
TCGCCGACGAGCTGCTCCCGCCGCCGCCGCCGCC---CGCGCCGGCCGCCTGA---------------------------
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>chr6B_1_TraesCS6B01G088900
AATCTTGCTACCTCTACCTCGGTTAGTAGATAGGTTACGTTTTTTTAGTCATTGCAGGGGCAACGCTCTGGCGAATGGCG
GCGCTTCATTTTCGAGTTGGCCTTCTAGGCTTCGATTCTCCTCAAATTCTTTTGTTCGGATGTATTAGACGAAGCCCGGG
TGTAGACTCCCATTGGTTCCTTGGGGTGACAAGGTTAGGGCATCACAAGATTTCGTGCCAGGTTCACGTATCGTTTCAAG
GGTTCAACACTCACGACCGCGGCTGCGAGGTGCTGGTCCAGCAAGTACACAATCGCAAAAAAGTTGCATAAGTGTTATAT
CGGAGTATTATTTTATTGTACTACCTCTATAGCTTGGGCGAACTAGTACACGTTCCCCAACTAGAAATATTTTTGTACAT
GGGAGTATATGATAGCGGTGTGCAAAGACGGTGAGGTATCACCTTTTCCCTTTTTTTTTCAAATGTACTATTTGCCATAA
ACCACCCCCAGATCTCCG---------ATATGAGCCAAGCCGGCTGAGCTCATAATCGAAAGGCATAATGAAAGGGTCCA
TCCTGCATTTATACGCCCGGCCGGCCGGCTCCTCCCAGGAAGCTTCCTCCGACGACAAGCACTGCACGACCGGGCCAGCG
TCACGTCAGATCCTCCCTCCGCCGTCCCAGCCCCGTC-CATCATCCCGTGCTCT------GGCCTGCTCAGAGCTCACTC
GTCCCCTCGT------GTGTACAACCACTACCACGGGTGCCGACCGGCCGTCCAGATATCT---CCTCCCCACCCGCGCA
GCTTCCCGGAAGCTTCTCCCCCGGGATGGACATGGGGTCGCCGTCATCATCCTCTCGATCGTACCGTCCTATCCATGATG
---ATCCGTCCTCACCTCCTCCTCCCT-CCCGCTTTATACAAGAGGCCAGCCAGCGCTCGGCTTCTTGCGCCCCGTCGAC
GCAGATACAACGACAGCGACGACGGTTCTTCATCGACCCACTCCCGGCCGGTCGCTCGA---TCATCGGAGCATGGCGGA
CGACGGCGCTGAGGCGTACGAGGACCTGCTGCCGGTGATGGCGGGGCGGCTGGGCACGGCGGGGCTGCTGTCGGAGCTGC
GGGCCGGGTTCCGGCTGCTGGCCGACCCGGCGCGGGGCGCCATCACGGCCGAGAGCCTGCGGCGGAGCGCGGGGGCCGTG
CTGGGCGTGGAGGGGATGACGGCCGAGGAGGCGCAGGTGATGGTGGGCGAGGGCGACCACGACGGCGACGGCGCGCTCAG
CGAGCAGGAGTTCTGCGTGCTCATGGTGCGGCTCAGCCCCGGCATCATGGCCGACGCCGAGGGCTGGCTCGAGGAGGCCA
TCGCCGACGAGCTGCTCCCGCCGCCGCCGCCGCC---CGCGCCGGCCGCCTGAGCGGTCACCGGCATAGCTAGCCATCTC
GATTGTTATGTACTACTACTTGCATCGATACTGACTTGTACGTATGTTTGTTGTATCGCCGCCGTGTAGCCGCCGTTGTT
TGAGTGTTCGTACGTACATGGTGATGCTCTCCGAGGCTTTGAGCTTTGCTTTATTGATTAATTTAGCTCGTGCATGGACT
TTTTAGTTCACCCAGGCCAGCAATCCTGGCTCGATCGTGCTCACACTCACCTC----CGATCTTCGTTTCTGAACATTCC
AATCTGGGGTAGAAGCATGCAAACTTGGTTCGGAACAG--AGTGGCTGATATCATACAGGAGCATGTGTGTGATCTCACT
TTTCGAAGAGCTTTTGGGGGAAGTTTGATCGAGATGCTGCCT-CTGCTCATGTAACAGAGCAAGACTGCTTCTATGTATA
TATGTGTTTTCCAGGTCGTTCAGGAGTTGACAAAAATAATACCCTGGGATCTGGGAATCATGACGTTCTTCTCTCTATGG
GGTTGTTGAATCTTCTAAGCGTTTGGTTTTTTTTTACTGGTCCCATTGCCTTAGTCTGTACGATGTAAGAGCATCTCTAA
CCGATCTTTCAAAAACTGTAGAAGAGTAAAGTTTCACTTTTCCTTCTTTGAACTAGATCTGACCGATTCCTTCAAAACTT
TGTAGGAGTAAAAATTGGCCACCCCGACTCTTATTTTTACTCGGCGAGCAACACGATCCTTGCAGCACCGCCCGTTACGG
AGCGATGTTATTGTACATCTCGGCCACCAATCAGGTGGCCAGCGTCGTACTGGTCGTGGAGCGGGAACAGGACGGCCGCA
CCTACAAAGTGAAGAGGCCGGTCTACTATGTTTCCGAGGTGTTATTCCTGTATAAAACGAGCTGCCCTCACTATTACTCC
CTCCTTTCCGGTTTATAAGGCTCAATTCAAAAATCTCACAACCAAGGTAGATGGTGAGTGATGGAATAATTTTTGTAGTT
TGCAAAAACACCCAATTAAT
>chrUn_461
AAAGTG--------------------------------------------------------------------------
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-----------------------------------------------------------------TACTATTTGCCGTAA
ACCACCCCCAGATCTCCG---------ATATGGACCGAGCCGGCTGAGCTCATAACCGAAAGGCATAATGAAAGGGTCCA
CCCAGCATTTACACACCCGGCCGGCCGGCTCCTCCCAGGAAGCTTCCTCCGACGACAAGCACCGCACGACCGGGCCAGCG
TCACGTCAGATCCTCCCTCCGCCGTCCCAGCCCCGTCACATCATCCCGTGCTCCGCTCAGGCTCAGCTC--AGCTCACTC
GTCCCCTCGTCCTCGTGTGTACAGCC---ACCACGGGTGTCGACCGGCCGTCCAAATATCT---CCTCCCCACCCGCGCA
GCTTCCCGGAAGCTTCTCCCCCGAGATGGACATGGGGTCGCCGTCATCATCCTCTCGATCGTACCGTCCTATCCATCATG
---ATCCGTCCTCACCTCCCCCTCCCTCCCCGCTTTATACAAGAGGCCAGCCAGCGCTCGGCTTCTTGCGCCCCGTCGAC
GCAGAAACAACGACAGCGGCGACGGTTCTTCATCGATCCACTCCCGGCTGGTCGCTGCTTGGTCATCGGAGAATGGCTGA
CGATGGTGCTGGGGCGTACGAGGACCTGCTGCCGGTGATGGCGGGGCGGCTGGGCACGGCGGGGCTGCTGTCGGAGCTGC
GGGCGGGGTTCCGGCTGCTGGCCGACCCGGCGCGGGGCGCCATCACGCCCGAGAGCCTGCGGCGGAGCGCGGGGGCGGTG
CTGGGCGTGGCGGGGATGACGGCGGAGGAGGCGCGGGCGATGGTGGGCGAGGGCGACCAGGACGGCGACGGGGCGCTGAG
CGAGCAGGAGTTCTGCGTGCTCATGGTGCGGCTCAGCCCCGGCATCATGGCCGACGCCGAGGGATGGCTCGAGGAGGCCA
TCGCCGATGAGCTGCTCCCGCCGCCGCCGCCGCCATCCGCGCCGGCCGCCTGAGCGGTCACCTGCATAGCTAGCCATGTT
GATTGTTATGTACTAGTACTTGCATCGCTACTGACTCT---GTATGTTTGTTGTATCATTGCCGTGTAGTCGCCGTTGTT
TGAGTGTTCGTACGTACATGGTGATGCTCTTTGAGGCCTTGAGCTTTGCTTTATTGATTAATTTAGCTCGCGCATGGACT
TTTTAGCTCAGCTCGCACTCCTG---TGGCTCGATCGTGATCACATTTTTCTCCCTGCGATCTTCGTTTCTGAATATTCC
AACCTGGAGCCGAAGCATGCTAAGTCGTTTGGTTCGAGACAGTGGCTGATATCATACAGGAGCATGTGTGTGATCTTTTT
CAGAGAAG----------------TTGACCGAGATGTTGCCTCCTGTTCATGTAACAGAGGAAT-CTGCATCTATGTATA
CA--TGTTTTCCAGGTCGTTCAGGAGCTGACAAAAATAATA---------------------------------------
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>chr6A_461
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------------------------------------------------------------AAAAGTACTATTTGCCGTAA
ACCACG-CCAGATCTCCGATATGGTCCATATGGACCAAGCCGGGTGAGCTCATAATCGAAAGGCATGATGAAAAGGTCCA
CCCAGCATTTATACGCCCGGCCGGCCGGCTCCTCCCAGGAAGCTTCCTCCGACGACAAGCACCGCACGACCGGGCCAGCG
TCACGTCAGATCCTCCCTCCGCCGTCCCAGCCCCGTCACATCATCCGGTGCTCC------GCTCAGCTCACTCGT-----
---CCCTCGT------GTGTACAGCCACTACCACGGGTGCCGTCCGGCCGTCCAGATATCTCCCCCTCCCCACCCGCGCA
GCTTCCCGGAAGCTTCTCCCC-GAGATCGACATGGGGTCTCCGTCATCATCCTCTCGATCGTACCGTCCTATCCATCATG
ATCATCCGTCCTCACCTCCCCCTCCCTCCCCGCTTTATACAAGAGGCCAGCCAGCGCTCGGCTTCTTGCGCCCCGTCGAC
GCAGAAACAACGACAGCGGCGACAGTTCTTCATTGATCGGAGCTCGAGCT------------------GGGCATGGCGGA
CGAGGGCGCGGGGGCATACGAGGACCTGCTGCCGGTGATGGCGGGGCGGCTGGGCACGGCGGGGCTGCTGTCGGAGCTGC
GGGCGGGGTTCCGGCTGCTGGCCGACCCGGCGCGGGGCGCCATCACGGCCGAGAGCCTGCGGCGCAGCGCGGGGGCGGTG
CTGGGCGTGGAGGGGATGACGGCGGAGGAGGCGCGGGCGATGGTGGGCGAGGGCGACCACGACGGCGACGGCGCGCTCAG
CGAGCAGGAGTTTTGCGTGCTCATGGTGCGGCTCAGCCCCGGCATCATGGCCGACGCCGAGGGCTGGCTCGAGGAGGCCA
TCGCCGACGAGCTGGTCCCGCCGCCGCCGCCGCC---CGCGCCGGCCGCCTGAGCCGTCACCTGCATAGCTAGCCATCTC
GATTGTTATGTACTACTACTTGCATCGCTACTGACTCT---GTATGTTTGTTGTATCGCCGCCGTGTAGTCGCCGTTGTT
GTTTGA---GTACTTACATGGTGATGCTCTTTGAGGCTTCGAGCT-----------------------------------
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>SNPs
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------S---
--------------------------------SS----------------------------------------------
S--S----------------------------------------------------------S-----------------
-----------------------------------------------------S-------SS-S-----S---------
-----------------------S--------------------------------------------------------
-----------------------S----------------------------------------------------S---
-------------------S------------------------------------------------------------
-----S------------S-----------------S-------------------SSS---------------------
---S-------S--------------------------------------------------------------------
----S-----------------------------------------------------------------------S---
-----------------------S----------S--S------------------------------------------
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--------------------------------------------------------------S-----------------
---------------------------S--------SSSSS----------------------------S----------
------------------------------SS--------------------------------------S---------
------S---S-SS-SS-SS-SSSSS-------------S-----S-SSS------------------------S-----
--S----S-SS---------S--S-S-S--S-SSSS----------------------------------------SSS-
SSSS----SSSSSSSSSSSSSSSS----S-------S---------S-------------S--SS----S----------
S-SS----------------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_258
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------------------------------------------------------------------------------AG
GGTTCAACACTCACGACC--------------------------------------------------------------
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>reverse_1708
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---------------------------GTTCGGAACAGAGTGGCTGA---------------------------------
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