>input_sequence_82109
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--ATGGCGGACACCAGCACCTTCGCGGCGCCCCCGCCCCCGTGGATGCCATCCCCTGCGATGTTCTTCACGCCGCCCGCG
CTGCCGGGCTACTACCAGGGCTCCGCGGCGGGCACCGTGCCGGAGGCGCCTCGGGAGGGCGGGGGCTCCATCGGCACGTT
CTTTGGCGTGCTCGCGGCCGTCCTGGTGCTCACCGCGGTGTCCTGCGTCTTTGGCCGCGTGTGCCGGGCGCAGGCCGAGG
GACCCGACGAGGTGTACGACTGCGCGAGGCTGTCGCGGCGATGGCGCTGGTGGAGCGCGTCTCCCCGGATCGTCAGGCGC
GGGGCCAAGCCGCCGCCCGTGGAGGAGGTGCCTGCCGCGCTGCCGCTGCCGGAGCCATGA--------------------
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>chr6A_1_TraesCS6A01G275400
TCCATCGGATGCATCACAACCTCCACAAGTAAAGTCACTAAACAAACAGATGGTGCATACAAGGTACAGTCACAGTGCTC
ATAAAGCTCATAT-----------------------------------AAAGTCCCTTTCGTTGTGCACCCGAGCAGTAT
ATACCCAGAAGTCTTTGTTCAGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGACGTAACATGGAGGTGACTACCAACCATCACACACACTTTGCGGCCTTTCCA
TGCCGCTCACCACTCGATCGATCCACGCAAAAGCCAGCCTCGCACACGTCCCCCCA-------CCCACCGTTCGCCCCCA
GCCTTACTGCACCTGCATGAGACTACATCGATCGATCCTCTGGTCCTTCGACACATCGCCGCGTTGCAAAGCGGCTGACG
CTTTGGCCGACCTCTTATCGCGGTACCGCTTCACATGCCTCGGCTCGTCCTACGTGCGCGCGCACCACGGGCACACACCA
CACCAGCTGACTAAGCTCAGGTCAGCTCAGCTCCGCTCGCCACTGCTCTATCGCGCTCTGGACTCACCTGGATGCGACAG
GGATGGCGGACACCAGCACCTTCGCGGCGCCCCCGCCCCCGTGGATGCCATCCCCTGCGATGTTCTTCACGCCGCCCGCG
CTGCCGGGCTACTACCAGGGCTCCGCGGCGGGCACCGTGCCGGAGGCGCCTCGGGAGGGCGGGGGCTCCATCGGCACGTT
CTTTGGCGTGCTCGCGGCCGTCCTGGTGCTCACCGCGGTGTCCTGCGTCTTTGGCCGCGTGTGCCGGGCGCAGGCCGAGG
GACCCGACGAGGTGTACGACTGCGCGAGGCTGTCGCGGCGATGGCGCTGGTGGAGCGCGTCTCCCCGGATCGTCAGGCGC
GGGGCCAAGCCGCCGCCCGTGGAGGAGGTGCCTGCCGCGCTGCCGCTGCCGGAGCCATGAAGTGTTCGTTAAGCTGCCGG
TCATCCGGTTCCTGCTGGCGTGTTCTTGTCCAGTGCAGGCTCCGGTTAGCACAGTAAGTAGTAGTGATCCATCTTAGACT
CTTAGTGTATCTACGCCAGTACGGAGTACATCGTTGTGCTCTCCGTGCCATTGGAGGATTTTCTTGATAGATTTATGTCC
TCGTTCCTTT---GTACTCGGGTTACTCAAAATAATAATGCACTTCTGATTACCAACATTCCCTTGTTAAACTCATCGCC
GGCGGTTCTTTTGCGCTTCATGTGTTGCAACGTTTGCGATTCACGAGTGTCCGAGCCAATCGCGCCGGAATGTTAGGTGT
GCATGGATTGGTGGTGACAATAAAGAATGTACTCCACCCACCACATGGATATGGAAGGATTGTCCATGAACTACCACTGC
CACTACCACCAACCAAGCCAAATATTACCAATACCATATCTTGCCGATCTTCCATCTTGCTGAAAGCCAATTAGAGCAAT
CATCACGGCCTTCACTAGTGTCCCTTTCACGGTAGCTTCTTCACGTAGGAAAACCTCCGAAATGGAATGTGTGACTGTC-
AGTACTCTAG---------TCTAGCTAAAATAAGCAAAAGGATGGTTGGAGGTGACTTGGCAGCAACTAAAGCAGGGACG
CACCCAGGCGAGAGTGACATTTCTATTTCTTTCGGAAT------------------------------------------
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------------------------------------------------CACTAAAAAACTGACGTTGGATTTTTAAGCAC
TCTCGAGCGAACACGCGAGCTGCCGTCGGACCTATTGCACTGATCTTGAAGCGGGCGCCGGATGACACGTCATCAAAGAT
AGTTGTTCGATGTATATGTTGTTCCTTGCCAATGATTTTTCCCTCCTCATGTTGTCCTCCGCGGGAGACTACGACATATC
CTCTTCCCTGCTCCCACTTCCTCTATTCCTAGGTGGTGCTGCGGAGACATACCAGACTCCGGCGAGTCACCCGTGGGATG
AGGAGGCATCGGTGTAGAGGATCTGTGACATG-GGGGTATTTGA
>chr6B_1
TCCGTCCGATGCATCACAACCTCCACAAGTAAAGTCACTAAACAAACAGATGGTACATACAAGGTACAGTCAGAGTGCTC
ATAAAGCTCATATCACTTTGCTTTTCACTTCTTAGATCTTCTTCTCTCAAAGTCCCTTTCGTTGTGCACCCGAGCAGTAT
ATACCCAGAAGACTTTGTTCAGTGTTTCCGTCGTCCGTGTATATCCCTCTCTCTCCCTTCTTTTTCTCTTTTCTATCTAC
AAGCATGAACA---------------------------------------------------------------------
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--------------------------CGACGTAACATGGAGGTGACTACTAACCATCACACACACTTTGCGGCCTTTCCA
TGCCGCTCACCACTCGATCGATCCACGCAAAAGCCAGCCTCGCACACGTCCCCCCAGTCCCCACCCACCCTTCTTCCCCA
GCTTTACTGCACCTGCATGAGACTACC-------ATCCTCTGGTCCTTCGACACATCGCCGCGTTGCAAAGCGGCTGACG
CTTTGGCCGACCTCTTATCGCGGTACCGCCTCACATGCCTCGGCTCGTCCTACGTGCGCGCGCACCACGGGCACACACCA
CACGAGCTGACTAAGCTCAGGTCAGCTCCG----GCTCTCCACTGTTCTATCGCGCGCTGCGCTCACCTGGATGCGACAG
GGATGGCGGACACCAGCACCTTCGCGGCGCCCCCGCCCCCGTGGATGCCGTCCCCGGCGATGTTCCTCACGCCGCCCGCG
CTGCCGGGCTACTACCAGGGCTCCGCCGCGGGCGCCGTGCCGGGGGCGCCTCGGGAGGGCGGGGGCTCCATCGGCACGTT
CTTCGGCGTGCTCGCGGCCGTCCTGGTGCTCACCGCGGTGTCCTGCGTCTTCGGCCGCGTGTGCCGGGCGCAGGCCGAGG
GGCCCGACGAGGTGTACGACTGCGCGAGGCTGTCGCGGCGATGGCGCTGGTGGAGCGCGCCTCCCCGGATCGTTAGGCGC
GGGCCCAAGCCGCCGCCCGTCGAGGAGGTGCCTGCTGTGCTGCCGCTGCCGGAGCCATGAAGTGTTCGTTAAGCTGCCGG
TCATCCGGCTCCTGCTGGCGTGTTCTTGTTCAGTGCAGGCTCCGGTTAGCACAGTAAGTAGTGT---TCCG--------T
CTTAGTGTATCTACGCCAGTAC----TACATGGTTGTGCTCTCCGTCCCATTGGAGGATTTTCTTGATAGATTTATGTCC
TCGTTCCTTTGTAGTACTCGGATTACTCAAAATAATAATGCACTTCTGACTACCAACATTCCCTTGTTAAACTTATCGCC
GGCGGTTCTTTTGCACTTCATGCGTTGCAACGTTTGCGATCGACGAGTCTCCGAGCCAATCGCGCCGGAATGTTAGGTGT
GCATGGATTGGTGGTGACAATAAAGAATGTAGTCCACCCACCACATGGATATGGGAGGATTGTCCACGAACTACCACTGC
CACTACCACCAACCAAGCTAAATATTACCA------TATCTTGCCGATCTTCCATGTTGCTGAAAGCCAATTAGAGCAAT
CATCACGGCGTTCAGTAGTGTCCCTTTCACGGTAGCTTCTTCACGTAGGAAAACCTCCGAAATGGAATGTGTGACTCTCT
AGTACTCTAGTCTAGCTAATCTAGCTAAAATAAG-AAAAGGATGGTTGGAGGTGACTTGGCAGCAACTAAAGCAGGGACG
CACCCAGGCGAGAGTGACATTT----------------------------------------------------------
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--------------------------------TTCTCCTTTGGGAATCCACTAAAAAACTCACGTTAGA-TTTTAAGCAC
TCTCGAGCGAACGCGC-AGTTGCCGTCGGATCTATTGCACTGATCTTGAAGCGGGCGTTGGGTG----------------
-------------------------------ACGATTTTTCCCTCCTCGTGTTATCCTCTGCGGGAGACTGCGACATATC
CTCTTCCCCACTCCCACACCCTCTGTTCCT-GGTGGTGATGCAGCAACATTCCCGACTTTGGCGAGTCGCC-GTGGGATG
AGGAGGCATCGGTGTAGAGGATCCGTGACATGGGGGGTATTTGA
>chr6D_1
TCCATCCGATGCATCACAACCTCCACAAGTAAAGTCACTAAACAAACAGATGGTACATACAAGGTACAGTCACAGTGCTC
ATAAAGCTCATATCACTTTGCTTTTCACTTCTTAGATCTTCTTCTCTCAAAGTCCCTTTCGTTGTGCACCCGAGCAGTAT
ATACCCAGAAGACTTTGTTCAGTGTTTCCATCGTCCGTGTATATCCCTCTCTCTCCCTTCTTTTTCTCTTTTCTATCTAC
AAGCATGAACA---------------------------------------------------------------------
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--------------------------CGACGTAACATGGAGGTGACTACCAACCATCACACACACTTTGCGGCCTTTCCA
TGCCGCTCACCACTCGATCGATCCACGCAAAAGCCAGCCTCGCACACGTCCCCCCAGCCCCCACCCACCCTTCTTCCCCA
GCTTTACTGCACCTGCATGAGACTACC-------ATCCTCTGGTCCTTCGACACATCGCCGCGTTGCAAAGCAGGTGACG
CTTTGGCCGACCTCTTATCGCGGTACCGCCTCACATGCCTCGGCTCGTCCTACGTGCGCGCGCACCACGGGCACACACCA
CACGAGCTGACTAAGCTCAGGTCAGCTCCG----GCTCTCCACTGTTCTATCGTGCGCTGGACTCACCTGGATGCGACAG
GGATGGCGGACACCAGCACCTTCGCGGCGCCCCCGCCCCCGTGGATGCCATCCCCGGCCATGTTCTTCACGCCGCCCGCG
CTGCCGGGCTACTACCAGGGCTCCGCCGCGGGCGCCGTGCCGGGGGAGCCTCGGGAGGGCGGAGGCTCCATCGGCACGTT
CTTCGGCGTGCTCGCGGCGGTCCTGGTGCTCACCGCGGTGTCCTGCGTCTTCGGCCGCGTGTGCCGGGCGCAGGCCGAGG
GGGCCGACGAGGTGTACGACTGCGCGAGGCTGTCGCGGCGATGGCGCTGGTGGAGCGCGCCTCCCCGGATCGTCAGGCGC
GGGGCCAAGCCGCCGCCCGTGGAGGAGGTGCCTGCCGCGCTGCCGCTGCCGGAGCCATGAAGTGTTCGTTAAGCTGCAGG
TCATCCGGTTCCTGCTGGCGTGTTCTTGTTCAGTGCAGGCTCCGGTTAGCACAGTAAGTAGCAGTGATCCG--------T
CTTAGTGTATCTACGCCAGTAC----TACATCGTTGTGCTCTCCGTGCCATTGGAGGATTTTCTTGATAGATTTATGTCC
TCGTTCCTTT---GTACTCGGATTACTCAAAATAATAATGCACTTCTGATTACCAACATTCCCTTGTTAAACCCATCGCC
GGCGGTTCTTTTTTGCTTCATGTGTTGCAACGTTTGAGATCGACGAACCTCCGAACCAATCGCGCCGGAATGTTAGGTGT
GCATGGATTGGTGGTGACAATAAAGAATGTAGTCCACCCAGCACATGGATATGGAAGGATTGTCCATGAACTACCACTGC
CACTACCACCAACCAAGCCAAAATAT-----TACCATATCTTGCCGATCTTCCATCTTGCTGAAAGCCAATTAGAGCAAT
CATCACGGCCTTCACTAGTGTCCCTTTCACGGTAGCTTCTTCACGTAGGAAAACCTCCGAAATGGAATGTGTGACTGTCT
AGTACTCTAGTTTAGCTAATCTAGCTAAAATAAGCAAAAGGATGGTTGGAGGTGACTTGGCAGCAACTAAAGCAGGGACG
CACCCATGCGAGAGTGACATTTCTTCTTCTTTGGGACGGGGCGTCGACCTGTTGGCTGGGCAGCTGAGGTTACTGCCAGC
CCACCCGAGTTCAAGTCCCGGCTCGGACGCGCGGTGCTCACGGAGTTTCTCCTATAAAAAAAATACCAACGAGGGTTAGC
CCCTGGGTTGGTCTCATTTTTTTTAACATTTCTTCTTCTTTGGGAATC-ACTAAAAAACTGACGTTAGA-TTTTAAGCAC
TCTCGAGCGAATGCGCGAGCTGCCGTCGGATCTATTGCACTGATCTTGCAGCGGGCGCCGGGTGACATGTCATCAAAGAG
AATTGTTCGATGTATATGTTGTTCCTTGCCAACGATTTTTCCCAACTCGTGTTATCCTC-GCGGGAGACTGCGACACATC
CTCTTCCCCGCTCCCACTTCCTCTGTTCCTAGGTGGTGCTGCGGCGACATTCCCGACTCCGGCGTGTCATC-GTGGGATG
AGGAGGCATCGGTGTAGAGGATCCGCGACATGGAGGGTA-----
>SNPs
------S-----------------------------------------------S-------------------------
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-----------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
---------------------------------------------------------------------S---SS-----
--S-----------------------SSSSSSSS----------------------------------------------
-----------------------------S--------------------------------------------------
---S------------------------S-SSSS----S------S----------S-----------------------
-------------------------------------------------------S------------------------
--------------------------S------S---------S------------------------------------
---S-----------------------------------------------S----------------------------
-S---------------------------------------------------------S--------------------
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-----------------------------S----------------------------------------SSSSSSSSS-
----------------------SSSS------------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------------------SS------S-------------------------------
-------------------------------S------------------------------------------------
------------------------------S-------------------------------------------------
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------------------------SS------S---SS------------------------------------------
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------------------------------------------------------------------S--S----------
------------S-----------------S------------------------------S-----S-----------S
-S------------------------------S---------------S----S-----S----------S---------
--------S---------------S-------------------S-----S--S-----------------S--------
-----------------------S--------------------
>forward_993
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--------------GCTCAGGTCAGCTCAGCTC-----------------------------------------------
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>reverse_2460
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-----------------------------------------------------------CGCGGGAGACTACGACATAT-
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