>input_sequence_82108
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----------------------------ATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTAGAGAGGG
ACCAGAGCCTGCGGGCGGGGCTGCTCGTCGACGGAGGCAGCGGCGAGGCGGCGGCGGTGCCCAAGGGGTACTTCGCGGTG
TACGTGGGCGCGGAGGCGCGGCGGTTCGTGGTGCCGATGAGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCT
GGCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCG
CCGCACTCGAGGCCACGGCCGAGTCGCGCCAGCGCCGGCGGAGCGCCGCCGGCAGGAAGAGCAGGAGCAACGCCACACCA
TGGTGA--------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G115600
ATTTCACAAACCAAAGATGCTTTGAAAGTGAACTTTATGATACAATAGCGCTTTGTGCATTGTTTTCTCATTATTTTATG
TATGAGAGG----GTGTGTACTACTA---GTATGGTTAACTTAGGCAGAAGCTAGTTAATTAATTGAAGTGTATTGGGTA
CA-------------------------------CACACGCCTTAACTCTACAGATCTGCGGTTAATTAGACTGAAATTAA
CCAGCTAACACTAGTCGGTGAATTTAAAAACAGATGCATA-TTTTCCCCCTTTATGAAAGATGGATTCTTCTAAAAAAAA
CGGACTACCGCTCAAACAGCAGAACTGGTGGAAGAACAGCTAGTACACTGGTACAGCTATACAGCTAATTGACTCGTTCA
-TCCATATAACAAATAAATGAAGATAAGACGTGTAACCATATCACCGTCCCCTACATG----GATCCAAGTCCCTAACCA
AAACCATTGAAGAAAAGCACATATGAACACACGCCATTCCATTGACCCACTCCACA--TACGCTTTCATTACACTGCCAA
TGACAGCCAGCTGAACATTTGAGCAATAATCAAGAAAGCATACCCGTCCAAGAGAAATAATACAGTAGCTT-TTTGGGTA
AAGAAGAGAAATAATAGCTGATATGTGCACAATAGTAAGATATTCTCCATAATAATATATTCCATGTGTGTTGTTTATAA
CATATTCTCCAAGAGTAGAATAAGATATGAGCCTTGCTGCAAGGCTGCTCCAGCTATGCCAAAGGCAGGAGGCTCCAAGA
ACAAGAGCCGCCCGTTGTTTCCAACCCCAACCACCCCACCCCACCCCGCCCATAATATACGCCCGCCCTCGCAAGAACAC
CCAGACCTCACATGCTTTGATCCCTCACCCT---------------TCCTCCTCCTCCTCCTCTTAACCTCCTCCGCCGC
AGCCCGTGCTCTCCCGTACTTCTTGGAGCCGATCATCGCAAGGTCGACCAACCA--GCCACTCTTC----ACCGTTTCTT
TGGCGCCACACCACCGCCGGTCGCCGAGATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTAGAGAGGG
ACCAGAGCCTGCGGGCGGGGCTGCTCGTCGACGGAGGCAGCGGCGAGGCGGCGGCGGTGCCCAAGGGGTACTTCGCGGTG
TACGTGGGCGCGGAGGCGCGGCGGTTCGTGGTGCCGATGAGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCT
GGCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCG
CCGCACTCGAGGCCACGGCCGAGTCGCGCCAGCGCCGGCGGAGCGCCGCCGGCAGGAAGAGCAGGAGCAACGCCACACCA
TGGTGATTGATCATGCTCATGCATGGCGACGTAGAAGAAGAGTTTTTTGTCCCGGTCATGTGGATGGACGCCGTGTCTTT
GCGTAGCGCGAGCATGGCCGTCGCCGATGATCCGTCCGATTTCCGAA--------TCACCATTGGTTTGCTAGTAGATAG
ATAATCTCTCACTCGTGTCTGGACTCTG--GAATAACGATGATCTTGTAAAGGGGCCCTTCTTTTTTGTTTTCGAGCAAC
ATCGATCTTGTAAGGGCTCTGAAACTGACAATTGAAAGATGATTTTGATTTCCATGATACATGCATGCATCCTCATGTTC
CTCCAGCTGATCAGAAGATTTGAGCCAGATATTGTTCTCCAGAAATTGTGTTTTTATTTTTCTTTACAATTAAAAAGGTG
TCCT----TTTATGTCTACTCAAATATGAACAGCCTGTATCCAAATGGAATCTCCTGCTAGCATTCTGCAAGCTGGAGAA
GCTGCACTCACATATATTCTGGTTATCTGTTTAGAATGTTCCTCAAAATTGCTATAACATGCACCTAGCATGTTCTATTG
ATATCTAAGAAGATACTTGCAGCTGGGACAACTGAAACAGGTGGCACAATTAACCCCATAATTCCTGGGAGAGAGGAACT
TCTCCTCCTTTTACTGTTTTTTTCCTCAAAAAACTAGGAGAAACACTACCTTCTAATCTTGTGTATATGAATAGCTAG-C
CCCACACTAACCTATTTATCTCAATATGCATGCATGCCACATCAGCATGCGACTTGCATGGT-AAAAAACTCACCTCAAC
ATCCAATCATGCGGGAAAAAGTTCA-------------------------------------------------------
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------------------------------------------CCTCACTCTGCAAACATGTGCATGAGAATTTACATTCT
GTTATGCTATTTATATTTAATAAATATTTTACAACTATACAATGATCAAACATAATGAATCATATGTAGTTTTAGTTTTA
CTTCTCATAGTATTACTCAAAATATCCATGTACCATACAAGCAAATATCACTAAAATATATGTTCTATGTTCTATATCT
>chr6D_1
ATTTCACAAACCAAAGATGCCTTGAAAGCGAACTTTATGATACAATAGCGGTTTGTGCATTGTTTTCTCATTATTTTATG
CATGAGAGGGAACGTGTGTACTACTA---GTATGGTTAACTTAGGCAGAAGCTAGTTAATTAATTGAAGTGTATTGGGTG
---------------------------------CACACACCTTAACTCTCCAGATCTGTGGTTATTTAGACTGAAATTAA
CCAGCTAACATTAGTCGGTGAATTTAAAAGCAGTTGCATATTTTACTCCCTTTCTGAAAGATGGGTTCTTCTAAAAAAAA
CGGACTACCGCTCAAACAGCAAAACTGGTGGAAGAACAGCTAGTACACTAGTACAGCTATACAGCTAATTGACTCGTTCA
TTCCATATAACAAATAAATGAAGATAAGACGTGTAACCGTATCACCGTCCCCTACATGCATGGATCCAAGCCCCTAACCA
AAACCATTGGAGAAAAACACATATGAACACACGCCATTCCCTTGACCTACTCCACA--TACGCTTTCATTACACTGTCAA
TGGCAGCCAGCTGAACATTTGCACAATAATCAAGAAACCATACCCATCCAAGAGAAATAATACAGTAGCTTTTTTGGGTA
AAGAAGAGAAATAATAGATGATATGTGCACAACAATAAGATATTCTCCATAATAATATATTCCATGTGTGTTGTTTATAA
CATATTCTCCAAGAGTAGAATAAGATATGAGCCTTGCTGCAAGGCTGCTCCAGCTATGCCAAAGGCAGGAGGCTCCAAGA
ACAAGAGCCGCCCTTTGTCTCCAACCCCAACCACC----------CCGCCCATAATATACAACCGCCCTCGCAAGAACCA
CCAGACCTCACATGCTTTGATCCCTCCCCCT---------------TCCTCCTCCTCCTCCTCTTAACCTCCCCCGCCGC
AGCCCGTGCTCTCCCGTACTTCTTGGAGCCGATCATCGCAAGATCATCAACCAGCTGCCACTCTTC----GCCGTTTCTT
TGGCACCACACCACCGCCGATCGCCGAGATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTGGAGAGGG
ACCAGAGCCTGCGGGCGGGGCTGCTCGTCGACGGCGGCAGCGGCGAGGCGGCGGCGGTGCCCAAGGGGTACTTTGCGGTG
TACGTGGGCGCCGAGGCGCGGCGGTTCGTGGTGCCGATGGGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCT
GGCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCG
CCGCGCTCGAGGCCACGGCCGAGTCGCGCCAGCGCAGGCGGAGCGCCGCCGGCAGGAGGAGCAGGAGCAACGCCACACCA
TGGTGATTGATCATGCTCGTGCATGGCGACGTAGAACAAGAGTTTTTTGTCCCGGTCATGTGGAAGGACGCCGTGTCTTT
GCGTAGCGCAAGCATGGCTGCCGCCGATGATCCGTCCGATTTCCGAGTCACCAATTCACCATCGGTTTGCCAGTAGATAG
ATAGTCTCTCACGAGTCTCGAGTCTGGAATGATTAATGATGATCTTGTAA--GGGCTCTTCCTTTTTGTTTTCGAGCAAC
ATCGATCTTGTAAGGGCTCTGAAACTGACAATTGAAAGATGATTTTGATTCCCATGATACATGGCTGCATCCTCATATTC
CTCCAGCTGATCAGAAGATTTGAGCCAGATATTGTTCTCCAGAAATTAAGGG-TTTTTTTTCTTTACAATTAAATAGGTG
TCCTCTTATTTATGTCTACTCAAATATGAACAGCCTGTATCCAAATGGAATCTCCTGCTAGCATTCTGCAAGCTGGAGAA
GCTGCACTCACATATATTCTGGTTATCTGTTTAGAATGTTCCTCAAAATTGCTATAACATGCACCTAGCATGTTCTATTA
ATATCTAAGAAGATACTTGCAGCTGGGACAAATGAAACAGGTGGCACAATTAACCGCATAATTCCTGGGAGAGAAG-ACT
TCTCCTTCTTTTACTGTTTTTTTCCTCGAAAAACCAAGAGAAACACAACCTTCTAATCTTCTGTTTATGAAGAGCTAGCC
CCCACACTAACCTATTTATTTCAACATGAAAGCATGCCACATCAGCATGCGACATGCATGA-AAAAAAACTCACCTCAAC
ATCCAATCATGCAGAAAAAAGTTCA-------------------------------------------------------
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------------------------------------------CCTCACTTTGCAAACATGTGCATGAGAATTTACATTCT
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>chr6B_1
ATTTCACAAACCAAAGATGCTTTGAAAGTGAACTTCATGATACAATAGCGGTTTGTGCATTGTTTTCTCATTATTT-ATG
CATGAGAGGGAACGTGTGTACTACTACTAGTATGGTTAACT------GAAGCTAGTTAATTAATTGAAGTGTATTGGGTA
CACCGTACACACGCCTTTTTTTTGCGGAAAGTACACACGCCTTAACTCTACAGATCTGCGGTTAATTAGACTGCAATTAA
CCAGCTAACATTAGTCGGTGAATTTAAAAGCAGATGCATA-TTTTCTCCCTTTCTGAAAGATGGATTCTTCTAAAAAAAA
CGGACTACCGCTCAAACAGAAGAACTGGTGGAAGAACAGCTAGTACACTGGTACAGCTGTACAGCTAATTGACTCGTTCA
TTCCATATAACAAATAAATGAAGATAAGACGTGTAACCGTATCACCGTACCCTACATG----GATCCAAGTCCCTAACCA
AAACCATTGGAGAAAAACACATATGAACACACGCCATTCCATTGACCTACTCCACACATACGCCTTCATTACACTGTCAA
TGACAGCCAGCTGAACATTTGTACAATAATCAAGAAAGCATACCCATCCAAGAGAAATCATAATAATAGCTTTTTGCGTA
AAGTAGAGAAATAATAGCTGATATGTGCACAATAATAAGATATTCTCCATAAAAATATATTCCATGTGTGGTGTTTATAA
CATATTCTCCAAGAGTAGAATAAGATATGAGCCTTGCTGCAAGGCTGCTCCAGCTATGCCAAAGGCAGGAGGCTCCAAGA
ACAAGAGCCGCCCTTTGTCTCCAACCCCAACGACCCCACCCCGC----CCCATAATATACACCCGCCATCGCAAGAACCA
CCACACCTCACATGCTTTGATCCCTCCCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTAACCTCCTCCGCCGC
AGCCCGTGCTCTCCCGTACTTCTTGGAGCCGATCATCG--------ACCAACCA--GCCACTCTCCCCCGGCCGTTTCTT
TGGCACCACACCACCGCCGATCGCCGAGATGATGATGGGGTACTTCTGGGCGCCGAGGAAGTCGGCGGCGGTGGAGAGGG
ACCAGAGCCTGCGGGCGGGGCTGCTCGTCGATGGCGGCAGCGGCGAGGCCGCGGCCGTTCCCAAGGGGTACTTCGCGGTG
TACGTGGGCGCGGAGGCGCGGCGGTTCGTGGTGCCGATGGGCTACCTCCACCAGCCGGCGTTCCGGGCGCTCATGGAGCT
GGCGGCCGAGGAGTTCGGCTTCGGCCAGGCCGGCGGGCTCCGCATCCCCTGCCGCGAGGAGGACTTCGTCGCCATCGTCG
CCGCGCTCGAGGCCACGGCCGAGTCGCGCCAGCGCAGGCGGAGCGCGGCCGGCAGGAAGAGCAGGAGCAACGCCACACCA
TGGTGATTGATCAAGCTCATGCATGGTGACGTAGAAGAAGAGTTTTTTGTCCCGGTCATGTGGAAGGACGCCTTGTCTTT
GCGTAAGGCGAGCATGGCTGTCGCCGATGATCCGTCCGATTTCCGAGTCACCAATTCACCATCGGTTTGCCAGTAGATAG
ATAGC-----------CTCGAGTCTGGAATAATTAATGATGATCTTGTAA--GGGCTC----------------------
-------------------TGGAACTGACAGTTCAAAGATGATTTTGATTCCCATGATACATGCATGCATCCTCATGTTC
CTCCAGCTGATCAGAAGATTTGAGCCAGATATTGTTCTCCAGAAATTATGTTTTTATTTTTCTTTACAATTAAAAAGGTG
TCCTCTTATTTATGTCTACTCAAATATGAACAGCCTGTATCCAAATGGAATCTCCTGCTAGCATTCTGCAAGCTGGAGAA
GCTGCACTCACATATATTCTGGTTATCTGTTTAGAATGTTCCTCAAAATTGCTATAACATGCACCTAGCATGTTCTATTA
ATATCTAAGATACTTGCAGCAGCTGGGACAACTGAAACTGGTGGCATAATTAACACCATAATTCCTGGGAGAGAGG-ACT
TCTCCTCCTTTTACTGTTTTTCTTTTCCAAAAACCAGGAGAAACACAACCTTCT--------GTACATGAATAGCTAGTC
CCCACACTAACCTATTTATGTCAATATGCAATCATGCCACATCAGCATGCGACGTGCATGGGAAAAAAACTCACCTCAAC
ATCCAATCATGCAGAAAAAAGTTCACCTCACTATGCAAATATGTGCATGAGAATTTACATTTTGTTATGCTATTTATATT
TAATAGATGTTTTACAACTATACTATGATCAAACACAATAAATCATATGTAGTTTTAGTTTTACTTCTCATATTATTACT
CAAAATATCCATGTACCATATATGCACGTAAATATCGCTAAAATATGTTTTATGTTCTATATGTAAAACACAATAAATGT
TCTATATCTAACCTCAATATCCAATCATGAGGAAAAAGTTCGCCTCACTTTGCAAACATGTGCATGAGAATTTACATTCT
-TTATGCTAGTTATATTTAATAAATATTTTATAACTATACAATGATCAAACACAATGAATCGTATGTAGTTTTAGTTTTA
CGTCTCATATTATTACTCAAAATATCCATATACCATACAAGTAAATATCTCTAAAATATATGCTCTATGTTATATATCT
>SNPs
--------------------------------------------------S-----------------------------
S-------------------------------------------------------------------------------
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----------S------------------S----------------S------S--------------------------
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--------------------------------------S-----------------------------------------
---------S------S------------------------------S----------------------------S---
---------------------SS----------------------S----------------------------------
----------------------------------S---------------------------------------------
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-------------S----S-----------------------S-S---------------S-----------------SS
--------------------------S-----------------------------------------------------
------------------------------------------S--S------------------------S---------
----S--------------S----------------------------------------------------S-------
----------------------------------S---------------------------------------------
---------------------------------------S----------------------------------------
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----S------------------------------S--------------------------------------------
----------------------------------------------------------------S---------------
------------------S---------------------------S---------------S-------S---------
---S--------SS--S--SS-S--SSS----S---S-------------SS----S----S------------------
--------------------------------------------------S-----------------------------
-----------------------------------------------S--------------------------------
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-------------------------------------------------------------------------------S
----------------------------------------------------------------------------S---
---------------------------S------S-----------S-------------S-------------------
-------------------S----------S----------------------S-------S------------------
------------S-S-----------------------------------------------------------------
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-------------------------------------------------S------------------------------
S--------S---------------------S--------------------S--------S------------------
-S-------S-------------------S-----------S-------S------------S--------S-------
>forward_1031
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---------------------------------------------------GACCAACCAGCCACTCTTCA---------
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>reverse_2253
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------------GGGAAAAAGTTCACCTCACTCTG---------------------------------------------
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