>input_sequence_82103
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------------------------------------------------ATGTCTGGGGTAACACAACGTTTTAGTCATGC
CGCGAATTCTGCATCAGCAGAAGCAATATGG---TGCCGAGGATTACAACTGGTTAGTGATATTGGCTGCTC-AAAGATA
ATTGTGGAATCAGACTATCTTGAGCTAGTAAATGCATGCACTGGAGTTTCAGATATATTGCCCCCCTATTCTGCTATTGT
GGCTGACAGTTTTCAGCTTGCACATGAGGTACCATCAATTCAGTTCAGGCATTGTCCCAGGGAAGCAAATACTTTGGCAC
ACCTATTTGCTAGGCATGCTTATGATGCTAATGTAATGTATAAGTGGGATGATGAGCCTCCTAGTTTTTTATTACCTCAT
GTTCTGAACGATGTAACATTGTTAAATTAG--------------------------------------------------
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>chr5D_1_TraesCS5D01G146700
CTTCACTTGGCAGAGTATCTTTGCTGGTCCTCAAACATTCAGAAGGGCGCATATTTGGAGAGTTGGCTCAGGGGAGAAAA
ACAATATTTGAGAGGTCCATTGGGTACCATCTAGTCCAACGAGAATGGTGCAAAATAGGAGAGGAAATATTTTACTGAGA
ATGGTTGATGAGCTCATTGATCCCCTTACGGGAACTTGGGATGAGGATCTTGGAAGGAATATTTTCCTTCCGGTTGATGC
GGAAATACTCTTGAGAATTCCTCTATGAGTTCATCTTAATGAGGATTTTATAGCATGG-ACAGTACAAAGTCTTATACCT
TCTCTGTTTGGTATGCCTATTACACCGAGTGAGAACATCATTTTGGAGCTAGAATTACTAGCAACGAAGGGACATCGAAC
ATTAATCCTATGTGGTCGGCTGTTTGGAAACTGGAACTGCCAAGCAAAGTAAAAATATTTATCTGGCGTGCCCTAAAAGG
TGTGATTCCTGGTATGGCTTTCCTCGCTCACAGGCACATAAAAGTTTCGTCGGAATGTCCAATATGTCGCTCGGGTCCTG
AGGATATATGTCACCTTCTC-TTACATGTACTCGCGCTCGTAAGGTATGGAAAGCCCTTTGTCTGGACAACATCATTGGC
AAGGCTTTGGATGTGGACCATTCAGGATCAGTAGTATTGGAGGAAATTCTCCGCTGGCCGAGAGGAAAGTCCCCGGTACT
TGGGCAACTAGGATTGCAAGAA-----GGTTGTTGCCTCTTGGAATATATGGTGGGAGAGGAGAGAAGCGAAGAAGGTTT
TGACTGTTAAA-CTCCCTTCAGTTCAGCTTTCGATATACAAGCTTTGGCAACAAATTATGCAGAGAAGCACCCTCAGGAG
CAAGTGAACAAACCTGGCTGGGAGAGGCCTCCCCCAGGCTTCTATAAGTTGAATACTGATGCCACATTTTTTGAAGATGG
CATAGGATCAATTGATGCAGTTCTTCGCAACGGTCATGGGGAGGGGGGATGTCTGGGGTAACACAACGTTTTAGTCATGC
CGCGAATTCTGCATCAGCAGAAGCAATATGG---TGCCGAGGATTACAACTGGTTAGTGATATTGGCTGCTC-AAAGATA
ATTGTGGAATCAGACTATCTTGAGCTAGTAAATGCATGCACTGGAGTTTCAGATATATTGCCCCCCTATTCTGCTATTGT
GGCTGACAGTTTTCAGCTTGCACATGAGGTACCATCAATTCAGTTCAGGCATTGTCCCAGGGAAGCAAATACTTTGGCAC
ACCTATTTGCTAGGCATGCTTATGATGCTAATGTAATGTATAAGTGGGATGATGAGCCTCCTAGTTTTTTATTACCTCAT
GTTCTGAACGATGTAACATTGTTAAATTAGCAATTAAGTGCCAAGAAACTTTCCTTTAAAAAAAAAACAGATGCGGGCAA
AGGAACAAAGACATTCAAGTCCCAAGGAAAAAGCCTTCATGTAGAATAGGGAATTCCTCCCATGTGCCACAGTTTCCCTC
CTAGACCAACTAGGGGCCCATAGACTCATCAACCATCCACCAAAGATTACCTTATTCCACCCACCCATCTCTTCATCTCA
AGGAAGTTTTGGTCATTGTGAAGGACCCCTTA--------------------GGCATGGAGCTCATTCACTCCCACTTGA
AT-AACTCACAATGAGAGACATTCCTCGCCCTCCCTAGAACCATGTTCAAATGGGGTTTGCTCGTGGGCCTCCGTGCTTT
TCTGTTGCCTAAGGATGACTTGACTTTGTTCTATTCCTTAAAAAAAGAAAAATGTATAACCTACGTATTAATATAATCTA
TAGTATTCATATAGAATAAGAATAAAAACTAAGACAATAAACTGCGGATTCTTTCTTTCTGTTCCATTCGAAAAGAAGAA
AGAACAGTCATGTTGTCTCCTTCTCACTCCCCGTTGATTTTTTATGGTGTTTTCGATTTCCCTTACACTGACCCCACCTC
GCACATGTGCATTTCCTCACTGCTTGGTGCTCATCCTTCTATGTCATCGTCCCCTGAGGCGACTTCCACAGATGCTCTTG
CGGCTTCTGCGTGCGGTGTTGCCTCTACGTCGACTCCTCTCACATCTTCGACCCGCGGTTGTGGCCGCTATGCGTCGACA
CCTCTAGTGGATTCTACACGTGGTTACGGCCGCTCTACGTCGACTGGTTTGATGGCTTTTGCACGCGATGATGGTCGCTC
TACATCGACTCCTACAGCGGCGGCCGTATGTGGTGGTCATCGCTCTACGTCGACTTTCTCAGTGGCTTTCACATGCCGCT
CTATGTCGAGTTACTGATCTCCGTCGACACTACACGTGGCTTGCACGGGTGGTGGCATTCGCTCTTCGTTGATGTGTTTC
TACCTCGACCT
>chr5A_1
CTTCACTTGGCAGAGTATCTTTGCTGGTCTTCAAACATTTAGAAGGGGGCAAATTTGGAGAGTTGGCTCAGGGGAGATAA
TCAATATTTGGGAGAACCATTGGGTACCATCTAGTCCAATGAAAATGGTGCAAACTAGGAGAGGAAATATTTTACTGAGA
ACTGTTGATGAGCTCATTGATCCCCTTGCGCGAACTTGGGATGAGGATCTTGTAAGGAATATTTTCCTTCCGGTTGATGA
GGAAAGAATCTTGACAATTCCTCTATCAGTTCATCTTAATGAGGATTTTATAGCATGGCACAAGACAAAATCTTATATGT
TTTTTGTTCAGTCTGCCTATTACACCGAGTGAGAACATTAGTCTGGAGCTTGCATTACTAGCGACGAAGGGACATCGAAC
ATTAATCATGTGTGGTTGGCTGTTTGGAAATTGTAAGTGCCAAGCAAAGTAAAAATATTTATCTGGCGTGCCCTAAAAGG
TGTGCTTCCTAGTATGGTTGTCCTCACTCACACGCACATAAAAGTTTCACCAGAATGTCCAATATGCCGCTCGGGTCCCG
AGGTTATATGTCACCTTCTCTTTACATGTACTCGCGCTCGTAAGGTATGGAAAGCCCTTGGCCTAGAAAACATCATTGAC
AAGGCTTTGGACGTGGACCATTCAGGATCAGTAGTATTGGAGGAAATTCTCCGCTGGCCGAGAGGAAAGTCCCCGGTACT
TGGGCAACTAGGATTGCAAGAAACAGTGGTTGTTGCCTCTTGGTATATATGGTGGGAGAGGAGAGAAGCGAGGAAGGGTT
TGACTGTTAAGCCTCCCTTTATTTCAGCTTTCGCTATACAAGCTTTGACAACAAATTATGCAGAGAAGCACCCTCGGGAG
CAAGTGAACAAACCTGGCTGGGAGAGGCCTCCCCCAGGCTTCTATAAGTTGAATATTGATGCCACATTTTTCAAAGATGG
CAGGGGAT-AATTGATGTAGTTCTTCGCAACAGTCATGGGGAAGT--GATGTCTGGGGTAACAGAACATTTTAGTCATGT
CGCGGATGCTGCATCAGTAGAAGCAATGGCCCTCTGCCGAGGATTACAACTGGTTAGTGATATTGGTTGCTAAAAAGATA
ATTGTGGAATCGGACTATCTCGAACTAGTAAATGCATGCACTGGAGTTTCAGATATATTAGCCCCCTATTATGCTATTGT
GGCTAACTGTTTTCAGCTTGCACATAAGGTACCATCAATTCAGTACAAGCATTGTCCTATGGAAGCAAATACTTTGGCAC
ACCTATTTGCTAGACATGCTTATGATGCTAATATAATGTATAGGTGGGATGATGAGCCTCCTAGTTTTTTATTACCTCAT
GTTCTGAATGATGTAACATTGTTAAATTAGTAATAAAGTGTCAAGAGACTTTCCATTC---AAAAAAGAGATGCGGGAAA
AGGAACAAAGACATTCATGTCCCAAGGCAAAAGCCTTCATGTAGAGTAGGGAAATCCTCCCATGTGCCACAGTTTCGCTC
CTAGACCAACTAGGAGCCCATAGACTCATCAACCATCGACCAAAGATTACCTCATTCTACCCACCCATCTCCTCATCTCA
AGGAAGTCTTGGTCATTGTCAAGGACCCCTAGGATATAAATAGCCCCCAATTGGCATTGAGCTCATTCACTACCACTTGA
ATAAACTCACAATGAGAGACATTCCTCACCCTCCCTAGAACTATGTCCAAATGGGGATTG--------------------
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>SNPs
-----------------------------S---------S-------S---S-------------------------S--
S---------S---SS-----------------------S--S-----------S-------------------------
-SS------------------------S--S---------------------S--------------------------S
-----S-S------S-----------S-----------------------------------SS-----S-------SS-
-S-S----SS--S-------------------------S-S-S-------S-S---------S-----------------
-------S-S------S-------------S--S--S-------------------------------------------
----S-----S------S-S-----S------S---------------SS-S--------------S-----------S-
---S-------------------------------------------------------S-S--S--S----------S-
-----------S--------------------------------------------------------------------
-------------------------------------------S---------------------------S-----S--
----------S--------S-S-----------S-------------S---------------------------S----
-------------------------------------------------------S---------------SS-------
--SS----S--------S-------------S----------S-SSS----------------S---S-----------S
----S--S---------S---------SSSS-----------------------------------S----S--------
-----------S--------S--S-----------------------------------SS---------S---------
----S--S-----------------S------------------S--S---------S-S--------------------
-------------S------------------S---------S-------------------------------------
--------S---------------------S---S-----S-----S-------S--SSSS------S---------S--
-----------------S---------S-----------------S-------S----------------------S---
--------------S----------------------S--------------S----S-------------S--------
-------S-----------S----------SS-------------------------S-------------S--------
---------------------------S-------------S----S---------S---SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_431
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-----------GTGGTCGGCTGTTTGGAAAC-------------------------------------------------
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>reverse_1323
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------------------------------------------AGTGGGATGATGAGCCTCCT------------------
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>forward_792
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----------------------------------------------------TGGGAGAGGAGAGAAGCGAA--------
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>reverse_2311
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----------------------------------------------------------------------ACATGCCGCT
CTATGTCGAG----------------------------------------------------------------------
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