>input_sequence_82082
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATGGTGGACGCGTGGTGGCCGCTGCTGGCCG
CGGCCGTCCCGGCGATCGTGGCCGGCCAGGCCATCCGCGTCAAGCGGCGGCGCGACGAGGAGCAGCGCCTCAAGGCGGCG
CGGGGCCGCGAGAAGAGCTCCGACGAGGTCTTCGTCTGCGAGCGCGTCTGCACCTCCAAGCGGATGCTCAAGAAGGTGGG
CGCCTTCTCCAAGGACCCCATCCCGGACACCTGCGTCACCGTCTGCGGCGTCTCCGAGCTCGACGCATGTGCCGACGCCT
GCGCGCGCACCGTCTGCGTCAACCAGCACCAGGTGCCCAACTGGAACGACGTCTGCCTCAAGCGCTGCCAGAGCGAGTGC
CTCAAGCTCTCCTCCACCATCATGTAG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr4B_1_TraesCS4B01G301900
TTGAGTAAGAATCCTGCAGTCCGGAGTCTTGGAGAAGACAACGACATCGACGGCGAGGCGCATTTTGGCCCACTGAGCTT
CCACAACTCTAGTCAGTCTAGGGCACCACCAAGATCCTCATCAACACGTGCAAGAAGAAAGTAGGAAAAAACGAGATATT
TTTTTAGAATAAAGATTAAAAAGAGTGAGTTATAGATGCTCCCTTGCAAATATCTCTGCATTAACTATGGGGTTAGGGCA
TCTTCAATGTCTACCCCAAAGCGCCCCCTAAATGTCTAGACCACGTGGTTCGAACACTTTTTTCATTCAATGGGGTACAT
CAAACGTTTGTGGAGTAATTCAGTTGTCCAAAATCCCGCAAATCGGAGGCAACATGAGAAGGTTTGGGGGAGTTTGGACA
CATTATGGACAAGCCTTGAATCCACCACAAACCTACTTTTTCTCTCTCGATCCCTTCTCGCTCCTCTCTCAATTGGACAA
GGTTGGAGGGCAGCCCTCTCTCAGATGTTCGTGGAAGTTTGATGTGTCTGATTTCAATGGCGTTTCCATGTGTTAGCTGT
GGGGTTAGCTGACCGAATAACTTTTGAAGAAAAATAACCTAAAACACTGTACATTTAGTGTTCATCATAAAGGAAGTTTT
TTTTTTTTAAAATTTGATAATGACCCCAAGATTCTTTAGGCTGATTTCGCCGCTGTCCGATTTGATGCACGGAGTTGGAG
ATGGAGATG--CGGGTTTCATCATAAGACATTTCCAATTTTCGGGCCGGATACGGGTTCCAGCGTAGAAGATATTTCCAG
TTATAGGCCCTGGTGCAGCCCAAGTCCAACCCCGACCATCATCTCTCTCCAGTTTGGGAACCACCATTCCATCTCCTTCC
TCTC---CCGTGGGCGGCGGCGGCGGCTGCAGATCGAAGCTAACGACGCAGCAAGGCGGACGGTGCGAGGACGCAGCAAG
GTAATTCCATCCACCCATCCATCCAC----CCCCAGGTCCGCGGCCAGGATGGTGGACGCGTGGTGGCCGCTGCTGGCCG
CGGCCGTCCCGGCGATCGTGGCCGGCCAGGCCATCCGCGTCAAGCGGCGGCGCGACGAGGAGCAGCGCCTCAAGGCGGCG
CGGGGCCGCGAGAAGAGCTCCGACGAGGTCTTCGTCTGCGAGCGCGTCTGCACCTCCAAGCGGATGCTCAAGAAGGTGGG
CGCCTTCTCCAAGGACCCCATCCCGGACACCTGCGTCACCGTCTGCGGCGTCTCCGAGCTCGACGCATGTGCCGACGCCT
GCGCGCGCACCGTCTGCGTCAACCAGCACCAGGTGCCCAACTGGAACGACGTCTGCCTCAAGCGCTGCCAGAGCGAGTGC
CTCAAGCTCTCCTCCACCATCATGTAGCAGCGGTGGTAACGAACTGCCGTGCCTCTTATCCTGATGCGGTGTGTTCTGCT
TCGGTTTACTTTCCTGCTTAGAGACTTCAGACATCTGTGGCTGTC-GTTTATATATCCGCAGCGGAGGATTGGAGAA-TC
TGAGTGAAATGGGCTTATCCTGGTTGTTATGCTCGGTTCATTCCATCGATTCTTTGAAAAATTGACCTCTGCACATATCT
TTTGTCGAGATGAATCATGGTTT----GCTAGCTAACCTACCATGCCCTGATTTGCTGGGCGTAAATGAGGCTTGGTTTG
ACCCTTTTGGATGAAACACTTGCACTGTTGAAACCCATATGCGTTTCTCTAAAGTTGCAGTTGAATTCCATATGCGTTTC
CCTGAAGTTGGGG----------------------------------------ACTTGTTTAGATTTGGTGATGGCCCTG
TTGGATGAAATGCTGACTAGTCGAATTCCATATATGTTTTCCAGCAGTTACTGGCATTGATCTCTAACTGAGTGTGATGC
TGAGTTGTGAATCTTTTAGACCTTTTTTCAAGTTAAATTTTG----TAGGCATTGCACACAGGGAGGCTTGTGCATAACA
GACGGTTAAGGCATGCTGATAATGTC-AAGAGAGGTCAGGGTAGACCAAACTTGATATGG-AGGAGTCGGTAAAGAGAGG
TCTGAAGGACTCGAATATCACCAAAAATTTAGCCATGGACAGGGATGGAAGTTGGCTATCCACGTACCAGAGCCATGACT
TCGTTTCGATATCTTATGGGTTTCGACTGTATCCTGCCCC---------------------------------------A
ACTTGTTTGGGACTGAAAGGCTTTGTTGATGTTGGTGTTGTTGTTGCACACAGGGAGGCTTGCTGCCCTTCCTAGTGCAG
CAGCCAAAGTCGT-ATCATTTTTTCTTCAACCAAACCA-TGCTTTGTTGACAAT---------TTTTAACAGCTATGGAA
TGCATTACATGGCTCAATTGTTTTAACCTTCACACTGCTATGAGCCTATTAGCTTATATATCTGGAATGGATACCAGTTG
TCGAGTCTC
>chr4D_702
TTGAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CACGGAGTTGAAG
ATGCCTTTACACGGGTTTCAGCATAAGACATTTCCAATTTTCGGGCCGGATAGGGGTTTCAGCTTAGAAGATATTTCTAG
TTTTCGGCCCTGATTCAGCCCAAGCCCGACCCCGACCATCATCTCTCTCCAGTTTGGGAACCACCATTCCATTTCCTTCC
TCTC---CCGTGGGTGGCGGCGGCGGCTGCAGATCGAAGCTAACGACGCAGCAAG-------------------------
GTAACTCCATCCATCCATCCCA--------CCCCAGGTCCGCGGCTAGGATGGTGGACGCGTGGTGGCCGCTGCTGGCCG
CGGCCGTCCCGGCGATCGTGGCCGGCCAGGCCATCCGCGTGAAGCGGCGGCGCGACGAGGAGCAGCGCCTCAAGGCGGCG
CGGGGGCGCGAGAAGAGCTCCGACGAGGTCTTCGTCTGCGAGCGCGTCTGCACCTCCAAGCGGATGCTCAAGAAGGTGGG
CGCCTTCTCCAAGGACCCCATCCCGGACACCTGCGTCACCGTCTGCGGCGTCTCCGAGCTCGACGCCTGCGCCGACGCCT
GCGCGCGCACCGTCTGCGTCAACCAGCACCAGGTGCCCAACTGGAACGACGTCTGCCTCAAGCGCTGCCAGAGCGAGTGC
CTCAAGCTCTCCTCCACCATCATGTAGTAGCGGAT---------TGCCGTGCCCCTTATCCTGATGCGGTGTGTCCTGCT
TCAGTTTATTTTGCTGCTTAGAGATTTCAGACATCTATGGCTGTC-GTTTATATATCCGCAGCGGAGGAGTGGAGAA-TC
TGAGTGAAATGGGCTTATCCTGGTTGTTATGCTCGGTTCATTCCATCGATTCTTTGAAAAATTGACCTCTGCACATATCT
TTTGTCGAGATGAATCAGGGTT-----GCTAGCTAACCTACCGTGTCCTGATTTGGTAGGCGTAAATGAGGCTGAGTTTG
-TCCTTTTGGATGAAATACTTACACTATTGAAATCCATATGTGTTTCTCTGAAGTTGCTGTTGAATTCCGTATGCATTTC
CCTGAGGTTGCTGACTTAGATCTATATTTGAGCATTATTTGAGAATGATGCTCACTTATTTAGATTTGATGATGGCCCTG
TTGGATGAAATGCTGACTAGTTGATCTCCATATATGTTGCCAGCAGTTGCGTAGT-------------------------
---GTTGTGAATCTTTAGACC--TTTTTCAAGTTAAATAAATTTATTAGGCATTGCACACAAGGAGT-TTGCGCATAGTG
GACGGTTAAGGCATGCTGATACTGTCAAAGAGAGGCCGGGGTAGACCAAAGTTGACATGGGAGGAGTCCGTAAAGAGAGA
TTTGAAGGACTCGAATATCACAAGGGCGCG---------------TGGAAGTTAGCTATCCACGTGCCAGAACCATGACT
TGGTTTCGATATCTTGTGGGTATCAACTCTAGTCTACCTTAACTTTTTTTTTTTTTTTTTGAAACGAGTAGTCTACCTTA
ACTTGTTTGGGAGTGAAAGGCTTTGTTGTCGTTG------------CACACAGGGAGGCTTGCTGGCCTTACTAGTGCAG
CAGCCAAAGTCATGATCATTTTTTCTTCATCTGAATCATTGCTTTGTTGACAATATTTGAAGTTTTTAACAGCTATGGAA
TGTATTACATGGCTCAATTGTTTTAACCTTCACAGTGCTATGAGCATATTAGCTTATATATCTGGAATGGATACCAGTTG
TTGAGTCTC
>chr4A_770
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACGGGTTTCAGCTTAGAAGATATTTCCAG
TTTTCGGCCCTGGTGCAGCCCAAGTCCAACCCCGACCATCATCCCTCTCCAGTTTGGGAACCACCATTCCATCTCCTTCC
TCTCCTCCCGTGGGCGGCGGCGGCGGCTGCAGATCGGAGC-AAGGACGCAGCAAG-------------------------
GTAACTCCATCCATCCATCCCTCCCTCCCTCCCCAGGTCCGCGGCCAGGATGGTGGACGCGTGGTGGCCGCTGCTCGCCG
CGGCCGTCCCAGCCATCGTGGCCGGCCAGGCCATCCGCGTGAAGCGGCGGCGCGACGAGGAGCAGCGCCTCAAGGCGGCG
CGGGGGCGCGAGAAGAGCTCCGACGAGGTCTTCGTCTGCGAGCGCGTCTGCACCTCCAAGCGGATGCTCAAGAAGGTGGG
CGCCTTCTCCAAGGACCCCATCCCGGACACCTGCGTCACCGTCTGCGGCGTCTCCGAGCTCGACGCCTGCGCCGACGCCT
GCGGGCGCACCGTCTGCGTCAACCAGCACCAGGTGCCCAACTGGAACGACGTCTGCCTCAAGCGCTGCCAGAGCGAGTGC
CTCAAGCTCTCCTCCACCGTCATGTAGTAGCCAGT---------TGCCGCGCCCCTTATCCTGATGCGGTCTGTCCTGCT
TCAGTTTACTTTCCTGCCTAGAGACTTCAGACATCTGTGGCTGTCAGTTTATATATCCGCAGCGGAGGATCGGAGAAATC
CGAGTGAAATGGGCTTATCCTCGTTGTTATGCTCGGTTCATTCCATCGATTCTTTGAAAAATTGACCTCTGCACATATCT
TTTGTCGAGTTGAATCATGGTTTGCTAGCTAGCTAACCTACCATGCCCTGATTTGATAGGCGTAAATGAGGCCCGGTTCG
-CCCTTTTGGATGAAATATTTGCACTGTTGAAATCCATATGCGTTTGTCTGAATTTGCTGTTGAATTCCATATGCATTTC
CCTGAAGTTGCTGACTT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>SNPs
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--
---SSSS-S-----------S-------------------------------------S----S----------------
--S-S---------------------------------------------------------------------------
-------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
----S--------S------S---SS------------------------------------------------------
----------------------------------------S---------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------------------------------------S--S----------
--------------------------------------------------------------------------------
---------------------------S-----SSSSSSSSSSS---------S--------------------S-----
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S-S---------------S------
S---------------S----------------S----------------S-------S----------------S----
----------SS---------------------------------------------S----------S-----------
---------------------S--SS------------SS-SSSSSS-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------------SSSS-SS---------------SSSS-------------------S----SS---S-----SSS
---------------------S-------------S-S------------S----S------------S----------S
-S-------------------S-SSSSSSSSSSSSSSSSSSSSSS--------S-----------S-----S--------
-S-------------S-----S--S---S--SS--S--SS----------------------------------------
------------S---------------SS----SSSSSSSSSSSS-------------------S----S---------
-----------S-----------------S-SS--S--------------------------------------------
--S-------------------------------S----------S----------------------------------
-S-------
>forward_383
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CGGAGGCAACATGAGAAGGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_2110
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TAGCCATGGACAGGGATGGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
