>input_sequence_82070
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-------------------------------------------ATGGACGTGGCGAGCGGCACGGCCAAGCGCAAGCGCT
CGTCCGCCGAA------GCCCCGGCCCCCGTCGGCGTCGACGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATA
CTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGCCTCGGGCGGGGTCGCCGCCGCCAGGGCCCGCGCCCCGGCTCCGGC
CCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGC---------CCCGACACCGCCGCCTGCCCCGC
---------AGCAGCAACTGCCCGCAGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGC
CTCGACCTCAACGCCGAGCCGGAGCCGGAGGTCACCCCCTC--GTAG---------------------------------
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>chr3A_1_TraesCS3A01G042400
GAAGAAGAGAGAGAAGGGAAGCGGGCTCTTGGTGAAAAGCCAGCTCTAGCACGTGCTCCTAGGCACTTTGTGAGAGTGAA
AGGTGGGCCATATAATAAAAAAGTAGTACACTCTTCTAATCAACTATTGTACATATTGGCTATAAGATGGGCTATAGATA
ACATGGCAATAGCTTATAGCCAGCAGTTGGCTATACTATTAACCATGCTCTAAGACGACCGCGGCCTCCTCCAACTTTGA
ATGCCGCTATACTAATTCTAAGCTAGCGAACTCCACGCCATCATACGTCAGCTGATCAGCTCCATGATGAGAGCACACCC
TCTTATTTTTTTAAAGGGCTTCCATCCGATTTCGTTTATCAGAAACCAACTTTTTCGTGGAACGACTGCTCTTGTATGAT
ACAGATACCGCGTCCAGTTGGTGAGGTGAGCGCGTGTTGCTTGCTTGCTTCGCATGGTATCTTGCCGTGGGAATTCCGCA
AACTGCATACGACCGCGCAGACGTAGGCAGCATGACGAAATTCCAGAGCTACGCCCGTGTCCCGTGTCATGGTCATGGAA
TGAATCATTGGTGTGCACCGGCAAGATGGCATCAGTCTGGGTGTTGTTTTGCACTGCTGGGGCGTCTTTGAAAGTTCAAC
GTCTACTACTTCCAACAAAGGAACAGCAGTGACAGTGAGCAGAGCCCCCGCCGGGTGTAGCTAGGCCGACCTTTTCCCGT
TGCAGGCCAGACCAGCGCGAGTCCTTGTAG----------------------TTGTAGGAGTAGCTTGTACTCATCGCCA
CGAAACTTCATTTGGCCGCCGTGCTTTCCACCTGCAGTAGTTACTACTGGTGCACGTGCAAGGCGTTCTCGTGAGCA---
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---------------------------------------------------GTAGGTTTACGTGGCTTCTTTTCTTCCGG
CGCACTCGCTCGTCCAGAGTCCGGAGTCCAGACATAAACTCGCCCACCCCTCACGCCACGCACCAAGGAGAGGCAAGCAA
G-CTGTAACGGCTGCCCGGCGAA------GGTGAGTGGTGACCATGGACGTGGCGAGCGGCACGGCCAAGCGCAAGCGCT
CGTCCGCCGAA------GCCCCGGCCCCCGTCGGCGTCGACGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATA
CTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGCCTCGGGCGGGGTCGCCGCCGCCAGGGCCCGCGCCCCGGCTCCGGC
CCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGC---------CCCGACACCGCCGCCTGCCCCGC
---------AGCAGCAACTGCCCGCAGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGC
CTCGACCTCAACGCCGAGCCGGAGCCGGAGGTCACCCCCTC--GTAGAGGCGC----------GAGGACGACGAGCCCTG
----GGACGG--------ACGGACAGA--CGTGGGCGAGCTGGCCGGCGACGATACTCTCCTCTCCTCTGTACCACCCAC
CGCCCG-------GCCGGCCGGTGCTTTTTTAGCAAACTGATCATCTTCATCTGTTAAT--TTAC-------TTTACCGG
TGGTAATTCGGTATGTTTAAACGAACGTTACTATAC-------TACGTAGCACTGTAGTTGTACGAGTACTCTCTTTCTT
GGCCGCGTACATTTGTACGTGATGCCTCTCGCTGTCTTGCTTGTGTGAACAAGGGAGACCTGTCACAAGAGTCCATTGAG
ACTGCTGTATTCTACTAA----CATTGCTTCATTATTAGTGCCTGCTTGACTTCCAAGGAATTCTAACTTACAGCTTTAA
CCACAGCTCTGCTACTGCCAAGGCCACGTCTAGAACAAAGTAAAGGCATAGGAATTTTGGAGAACAGGATCCATGTAGGA
AATTTCCTTTTGGTGCAATTTGGAACAAAGGAATTGCTATCTTGCATTATTTCGAAATTCCTATGGAATGGGCTATTCCA
TAGAATTTCGGAAATGTTAACGCCCACACGTGTGGGCGTTGATCATCTCGATCACACGCATTCATCACCGTCCAGTACTA
TATGCACGAATCTTGACACAATCTGGCTGATTTTCTGTGCCACGTAGGACAAGGCGTGTGTGTGGTGTGTGACATAGTTC
GCCCACACATCCGTTTTACCACACGGAGGGGCCAGTGTGTGGGCGTTTAGCAGTTCACCCACACACCAGTTTTCAGTCAC
GCACAAGGGCTGGTGTGTGGGCATTTGCCATCTCGCCCACACGCCCATCTCCTCTCCCACGCGTAAGCTGCTAGTTGCCA
TGTGTTTTTGCAGCGCACATGGCAACTGCCTCTAGTGTGCTTTATAAGCAGGTGGCAACTCTCTTTTTTTACCTGAGTTG
CCATGTGTTTTTGCAGGGTACACGGCAACTGTCTAGTGTGCACGTAAGCAGATGGCAA
>chr3B_342
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---------------------CCATCCGATTTCGTTTATCAGAAACCAACTTTTTTGTGGAACGACTGCTCTCGTTGTAT
---GATACAGCACCCAGTTGGTGAGGTGAGCGTGCA-----------------------------------AATTCCGCA
AACTGCAGACGACCGCGCAGACGTAGGCAGGATGACGAAATAGGAGAGTTAT----------------------ATGGAA
TGAATCATTGGTGTGCACCGGCAACATGGCATCGGTCTGGGTGATGTTTTGCACTGCTGGGGCATCTTTGAAAGTTCAAC
GTCT---ACTTCAAACAAACGAACAGCAGTGACAGTGAGCAGAGCCGCCGTTGGGTGTAGCTAGGCCGACCTTTTCCCGT
CGCAG-CCAGACCAACACGAGCCGAGCCGATGATCGCACGCGAGCCCGGTTCTTTTAGGAGTACCTTGTACCCATCGCGG
CGCAATTTCATTTGTTCGCGGTGCTTTACACCTGCACTAGCAATTTTAATGGGGCGACCCATTTCGTCCGTCCGCGTCTG
TTTGGATCGGCGCGGACAAAAGTGGCCGCCCAACGCGCCGACCCAAACGGACGCGCGTCTGTTTTTTATCCGCGGGTGAT
CCATTCCCGGTCCAATTTTAAACCTGATTTGCGCCGGCGCGGACACGAGCCGGAGACGCGCATGCGCCTACTCCTCTCCC
TGGGCCCGCTGGTCGGTGACAGCCACCACCATTCCCCCCTAATTTCCCAGAAACACTCCTGCCCGCGCGCGCTCGCTCCC
GACCCAATCATGGACGACGCCATCGACCTCGACCTCGACGCCGCCGCCGGCCTCGCCTCCCTCGCCTCGTCCAGCGCCGT
CGCCCCCTCCGGAAAAGGCAAGCCTCGTGCCCCGCGCAAAACTGCCACCGCGCCCAAGCCGAAGAAGGCGCTGACTCCCG
AACAGCGGGCAAGGGAGTCAGCCAAGAGGAAGGGTCGGAGGCACGCCGCGGACGCGAGGGATGAGGCCGCCACGCAGGCC
GCCGTCGTCGCCGCCGCGCAGCAGGAGTACACCAATGCCCGCGTCGCGGCGGCAACGAGGGAGGCGCTCTACATGCTAGG
GGTAAACCCTAGCCAGCACAGCCTCGTCCAAGCCGCCGTCGCCGCGGCCAGCACCGGCTCGTCGGCGCTTCCTCGGATGG
TGCTGCCCGAGTCACCCCGCGCGTCGGCTTGCAACCTGGTCCCCGGCTTCCACGTCTACCCGCAGGCCTCCCGCCTCTTC
GGGGAATGCTCACCCGACGTGAGCGTGGCCGCGCTTTCCACGCCCGCGCCAGCGCCCATCGACCTCAACGCCATCACAGT
GGTTGGTGGCTCGTCGTCCGGCGGCACGAGGAAACGCGCCCGGCAGACGCCGGCCGGCGGGCTCCCAGACATCCGTAACC
TGTTCGAGGGAATGACGTCCGCCGTCGACGAGGACTTCATGCAAAACCTCATCTTCGAGGGCGGTGCGCCGGGCGCTGGC
TATGATCCCGGGCGTGGTCGAACTCAAGTCACACCCTTTTTTGCGTGCTGGCATGTGTGCTGGCCGGCTGGCAAGTGCGT
CAGCATGAACTGTGGTGATTTTTTCTGAAACCGGCATTATATGCTGGCGCTGGCTGGTGCCGGCATGAGACATGGCCGCT
GGCATGATCGACCACGGTCCCTTTTTATTTAAAAATTGAATGAGGGCATGAAATGGGTCGACGCGTTGGGCGCACTGCCG
ACCCAAATATAAAACTGGGCGGACGCCGGACGGATGGCCGACCCAAACAGACAAAAGGCGGACAAATGCGCCGTCTGTTT
GGGTGGAGTTGCTTTTACTTGTAGCTGGTGGAGTTAGTCGCCGTCCCGTCTTAAACAAAAGAAAAAGAACCTTTTTTTAT
CTCTCTTTGTTTTCCAACCGGCGGCCATTCTTTTTGGATCATATAATAAGCGTAGGCTTTCGGGTGTTCTTTTCCTCCGA
GGCAGTCGCTCGTCCTGAGTACAGACTCCAGACACAAACGCACCCATACATCACACAT---------------CAAGCAA
G-CTCGTCCAGAGTCCAGAGTCGCGCGC-------TGGTGACCATGGACGCGCCGAGCGGCAACGCCAAGCGCAAGCGCT
CGTCCGCCGAA------GCCCCGGCCCCCGTCGGCGTCGAAGACGTATCCGACACCGAGGTCGAGGAGTTCTACGCCATA
CTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTCGGGCGGGGTCGCCGCCGCCAGGGCCAGCGCCCCGGCTCCGGC
CCCGCGCGCGCCGGCATGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC--
-------------GCAGCAGCCCGCCGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGC
CTCGACCTCAACGCCGAGCCGGAGCCGGAGGTCACCCCCTC--GTAGAGGCAC----------GAGGACGACGACCCCTC
GGACGGACGG--------ACGGACGGA--CATGGGGGAGCTGGCCGGCGACGATACTCTCCTCTCCCCTGTACCACCCAC
CGCCCG-------GCCGG----TGCTTTTTTAGCAAACTGATCATCTTCATCTGTTATT--TTACCTTACCACTTACCAG
TGGTAATTCGGTATGTTTAAACGATCATTACTATACTACGGAGTACGTAGTACTGTAGTTGTACGAGTACTTACTTTCTG
AG-CGCGTACGTTTGTACGTGATGCCTCCCGCTGTCATGCTTGTGTGAACAAGGAAGACCTGTCACAAGAGTCCACTGAG
ACTACTGTACTCTACCAA----CATTGCTTCATTATTAGTGCATGCTTAACTTCCAAGGTTTCCTAACCTACAACTTTGA
CCACAGCTCTGCTACTGCCAAGGCCCCGTTCGGAACAAAGTAAGGACATAGGAATTTTGGAGGATAGGATTCATGTAG--
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>chr3D_854
CAGTAGG-------------------------------------------------------------------------
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---------------------------------------------------------TTTCGTGGCTTCTTTTCTTCCCA
GGCACTCGCTCGTCCAGACTCCAGAGTCCAGAGGCAAACTCACCCACCCCTCACGCTACGCACCAAGGAGAGGCAAGCAA
AACTGTAACGACTGCCCACCCCGCGCGCTGGTGAGTGGTGACCATGGACGCGCCGAGCGGCACGGCCAAGCGCAAGCGCT
CGTCCGCCGAA------GCCCCGGCCCCCGTCGGCGTCGATGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATC
CTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTCGGGCGGGGTCGCCGCCGCCAGGGCCCGCG------CCCCGGC
CCCGCGCACGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC--
-------------GCAGCAGCCCGCCGACGAGCGCGTCGCCGAGAACGCCTCGCCGCCGCGGCGACCCGTCCCCCGCGGC
CTCGACCTCAACGCCGAGCCGGAGCCAGAGGTCACCCCCTC--GTAGAGGCGC----------GAGGACGACGATCCCTG
GGACGGGCGG--------ACGGACGGA--CGTGGGCGAGCTGGCCGTGGACGATACTCTCCTCTCCTCTGTACCACCCAC
CGCCCGCCGGCCGGCCGG----TGCCTTTTTAGCAAACTGATCATCTTCATCTGTTAAT--TTAC-------CTTACCAG
TGGCAATTCGGTATGTTTAAACGAACATTACTATACTG-------CGTAGTACTGTT---------------TCTTTCTT
GGCCGCGTACGTTTGTATGCGATGCCTCTCGCTGTCATGCTTGTGTGAACAAGGGAGACCTGTAACAAGAGTCCATTGAG
ACTGCTGTACTCTACCAATTAACATTGCTTCATTAGTAGTGTCTGCTTAACTTCCAAGGTTTCCGAACTTACAACTTTGA
CCACAGCTCTGCTGCTGCCAAGTCCCCGTTTGGAACAAAGTGAGGACATAGG-ATTTTGGAGGATATGATTCATGTAGAG
AATTTTCCTT----------------------------------------------------------------------
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>chr3A_992
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----------------------------------GTGGTGACCATGGACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCT
CCTCCCCCGCCGCCGCCGCGCCGGCCCCCGTCAGCGTGGACGACGTATCCGACGCAGAGGTCGAGGAGTTCTACGCCATC
CTGCGCCGCATGCGCGACGCCTCGCGCCGGCTCGTCTCCGGTGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGC
CCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCGACACCGCCGCCTGCTCCTT
CGCAGCAGGAGCAGCTGCTGCCCGCCGACGAGCGCGTGGCCGAGAACGCGTCCCCGCCGCGGCGGCCCGTCCCCCGCGGC
CTGGACCTCAACGCCGAGCCGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCAACCCGCACGGACGACGAGGACCCCTG
GCCTGGGCGCGCCCCCGCACGGACGGACGCGCGCGCGCGCTGGCCGGCGGCGACACTCTCCCCTCTGTACCACCACCCGC
CGCCCGGCGGCCGGTG---------CTTTTTAGCAAACTGATCACCGTCATCATTTGTTAGTTAC-------CTTACCAA
TGGTAA--------------------------------------------------------------------------
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>SNPs
S-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----------------------------------S----------------S--SSS--
SSS-----S--SS-------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
-------S----------------------S----------SSS----S--SSSSSSSSSSSSSSSSSSSSSSS------
------------------------S--------S---------S-------------------S----------------
----SSS-----S------S--------------------------S---SS----------------------------
S----S--------S-S----S-SSSSSSS------------------------S--------S-------S------SS
--S--S--------SS---S-------S--------S---SS-S-SSSSSS-SS--SS-S-SSSSS--SSSSSSSSS---
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--------------------------------------------------------S--S-------------------S
S---------------------S-----------S------S--------------S-----------------------
------------------S-SSS---------------------------S-S---------------------------
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----------------------------------S---------------------------------------------
---------------------------------------------------------------------------S--SS
----------------S--------S------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------S-------------------------------------------------------
------------------SSSS--------------------------------------------------S-----S-
--------------------------S-----------------------S--------------------S--------
----------S-------------------------S-------------------------------------------
---------S-----S--------------------------------S----------SS-S----------S----S-
-------------------------S---S-S-----------S-S----------------S-S-----S-------SS
-----S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_54
----------------------------------AAAAGCCAGCTCTAGCACGT--------------------------
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>reverse_3493
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----------------------------------------------------CACACGCATTCATCACCGTC--------
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