>input_sequence_82043
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGGCTTCAC
CTTCCCCTCTGAAGAT------------GCTCGCCGTCGTGTGCGTCCTTGTGCTGGTCGGCCTCAGCTTGAGCCAGCAG
GCGACGGCGTCGGGCTGCGATGACTGCGCTGACGGACACAATCCGGCGGCTTGTGCTCCCAGGTGCACTGAATATTCCCG
CACTGCAAATTCCTGCACTGGCTGCCCCATGCTACAGAGCACC---TCGTGCTCGCAGAAATGCTTGGATGGTTGCTATC
ACGAGTGCAGTAGAAGGCCCTGA---------------------CGATCGCGTCGTTCACCATCGACCATCGTTTTCCTC
TTGTTTCCTTTCGGCCTTCCATTTC-AGCCAAACATCCCG---GCGCGCGTGTATGCGTGTTGATTGGTATGACGCAAAA
TGGCAATAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr5A_1_TraesCS5A01G537200
GCTCTGCTCAAATGAGCTCGGGTGAAATGTAAAATCCAAGACGAATTGAAAACAAATTTAAACAAT---TGAATAATTTT
TGTGTCAAACACTGTTAAATGTCCTAAGTAGTTGCAAAAATTGATCACGAAATTACATTCATGGA--AGTCGTGGCAAAA
AAATGAAGCTCCA----AAAGGTTAGTTTCAAAAGCATTTTGGTGAT----TTTTTTTTTTTGCCACGACTTCCACAAAT
GTCATTCGATGATGAAATTTTGCAATCGTTAGAAATAACTGTCAAAGTTTATCGCGA-AAAAATCAGATTTTTTTAATTT
GTTTCAAAAT-GTCCAGATTTTACTGTTCATACCGAGCTCACATGAGCTCGAGCTGAGA-AGGACACTTTGGCTACAGGC
GCTACACCCCATTGAGACTACCACCGGAATCATGCACCGACAGGTACGTGTTAT-----TTATAGGCGAAATATCAGAAT
CCTTAAATGCTAGCACGTACTTGTATACAT----TTTGCAAGTCAACTGTCCGTATTAGCTTTATGCATCTATAGTTGTT
TGCAAGTTGCAACCTTTGGGTCAACCGATCACCCCC-TGCAGCAGCCAGATGCCGACTGACATGATTCGGTTTTTAATCT
ATAGTACTTTTATCAATACATCGTTCTGATCTCAAAATATGCTGGGTAATCGTTCTGATCTCGAATATGATGGGGAATCA
ACTTGTTGGAGTAACTCCGCTTTATTTAATTTGGTCCGTATGAATGCATATGATTGTTTTTGGATTTTTTCTGAAACTTC
AAAATAGGAATTTTCAAATTATTCAAAATAAAGAGCTGTATGGAGCCCGACCTCCATTTAGCATTTTCGAGTCACATCTC
ACACGCTACTAGTAGTAGATCTCG-TCCAGA---ACTCCATATACTACTCTTTCACTCGGCTATAAATAACCGAGCAACG
GCCAGGTTCGCCTGCCCACCCACCTATTCGTCCTGATTTGCAACCATCCTCTGCTCTTTCCCAAGAATCAATGGCTTCAC
CTTCCCCTCTGAAGAT------------GCTCGCCGTCGTGTGCGTCCTTGTGCTGGTCGGCCTCAGCTTGAGCCAGCAG
GCGACGGCGTCGGGCTGCGATGACTGCGCTGACGGACACAATCCGGCGGCTTGTGCTCCCAGGTGCACTGAATATTCCCG
CACTGCAAATTCCTGCACTGGCTGCCCCATGCTACAGAGCACC---TCGTGCTCGCAGAAATGCTTGGATGGTTGCTATC
ACGAGTGCAGTAGAAGGCCCTGA---------------------CGATCGCGTCGTTCACCATCGACCATCGTTTTCCTC
TTGTTTCCTTTCGGCCTTCCATTTC-AGCCAAACATCCCG---GCGCGCGTGTATGCGTGTTGATTGGTATGACGCAAAA
TGGCAATAAAGCTCAGTCGATCTGGATCACTGTACCGCGGGGTTTGTAATCGAATTCGTGTGTTTCTTTCCTTATTGTTG
TTCCTTTTGTTGAGGTCTCTCTTTGTTTGTGTTATAAATCAAGGACGTGGATAACTACCGAACGAAAGGTTCGGTACGCC
ATTTTAGCCCCGCCGAACGATTTCGTTCGGGACGAGAGGCCCCCAGCCCGAACGCCCATTGGCACTGCCCCTACAGGCCC
TTTTTTAGGAACACGGCCTTACAGGCCTCTTCTCTGTAGAAACAAAAAAAAA-GCCCAGAAGCGACAC-AAAAGCCCTTT
TTTGCTGGGACAAAATAAACACAAGCCCTTTTT-TGCTGGGACAAAAAATTGCCATGGATCATATGTAAAGTAAAAAAAT
CAAAGAAAAATAGAGTAAAAATGCCAGTCCCATAAAGTTGGTTTGACACGA---AAA-AACCATTAGTGATTACATTGAC
ATGTACGTAAA-GGTAGTATAGGTAAATCCCGAACGCCCATTGCCACTACCCCTACAGGATAATTACCGAACGTCGACAA
TATAGGTAAACTCGCCATGTCAAAAAGATAAAAATTGCGATGGGAAAATAAAAGAGT-AAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAAATTGCCATAGCGTTATAGATAAAATTGGCATGCCAAATTGAAAGAAAAAGTTGCCAT
ATTTTTTTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAATCTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAATAAAAAAATAAAA-TTTTAACAGAAAAATAGAAAATAGATGTTAAAAAAAGAAATTGCCATGGTGTTGCAGATA
AATTTTCCATGTCAATATAGGAAAAATTGCCATGGCAAATTGAAAGAAAAATTTGCCATC---TTTTTTTTTTCATTTGA
ATGTCCTATATTGCCATGGCAATATATGCAAACTTGCCATGTCAAAAAGCTAAAAATTGCCAT-
>chr4B_6
-----GCTCAAATGAGTTCAGATGAACAGTAAAATTCCTAAAATATTGAAAATAAATTCAAAAAATATCTGAATGTTTTT
TGTGTCAAACATTGACAAATGTCCTAAGTGGTTGCAAAAATTGACCACGAAATAACATTCGTGGGAGAGTCCTGGCAAAA
AAAAATCGATGCTCCATAAATGTTATTTTTAAAAGCATTTTGGGGTGCTGATTTTTTTTTTTGCTAGGACTTCGATGAAT
GTCATTCTATGATGAAATTTTGCAAGCATTGGAAAAAATTGTCAAAGTTTCTCACAACAATACTCAGAGTTTTTTGGTGT
TTTTTTTTAAAGTTCACATTTTACTGTTCATACCGAGCTCACGTGAGCTGGATTTGAGATAGGACAGTTTCGCTACACGT
GCTAC-CCCCATCGGGACTACCACCGGAATCATGCACAGACAGATCTGATCTGTACGTGTTAGAGGCGAAACATCGGAAT
CCTTGAAAATGCTAGTAGCATCTAGTTAATATACTTGGCAAGTCAACTGTCGGTATTAGCTTTATGCATCTATAGTTGTT
TGCAAGTTGCAACCTTTGGGTCAACCGATCCACTCCATGCAGCAGCCAGATGCCGACTGACATGATTCGGTTTTTAATCT
ATAGTACTTTTATCAATACATCGTTCTGATCTCAAAATATGCTGGGTAATCGTTCTGACCTCAAATATGATGGAGTATCA
ACTTGTTGAAGTATCCCCGGTTTAGTTAATT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr4B_861
TACAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TAGTAGATCTCGATCCAGAAGAACTCCCTATACACTT-------TCGGCTATAAATAACCGAGCAACA
GACAGGTTCCCCTGCCCACCCTATTATTTGTGTTGATTTGCAACCATCATCTGCTCTTTCCCAAGAATCAATGGCTCCAC
CTTCCCATCTGAAGATGAAGATGAAGATGCTCGCCGTGGTGTGCGTCCTTGTGCTGGTCGGCCTCAGCTTGAGCCAGCAG
GCGACGGCGTCGGGCTGCGATGACTGCGCCGACGAACACAATCCGGCGGTTTGTGCTCGCAGTTGCACTGAATATTCCAG
CGCCGAGCATTCCTGCGCTGGCTGCCCCATGCTGCAAAGCATGCTTTCGTGCTCGCAAAAATGCTTGGATGGTTGCTTTC
ACGCGTGCGGTAGACGGCCCTGAAGGATAGCCTGCATGCATCTTCGATGGCGCCGTTT-------ACCATCATTTTCCTC
TTGTTTCCTTTCAGCCTTCCGTTTTGAGCCAAGCATCCCTCGCGCGTGTATGCATGCGTGCTGATTGGTGTGAGGCAAAA
TGGCAATAATGCTCAGTAGATCTGGATCTCTGTTCTA--GGGTTTGTAATCGTATT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr4D_868
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGTAGATCTCGATCCAGA---ACTCCCTATACTCTT-------TCGGCTATAAATAACCGAGCAACA
GACAGGTTCCCC-------------ATTCGTGTTGATTTGCAACCATCCTCTGCTCTTTCCAAAGAATCAATGGCTCCAC
CTTCCCCTTTGAAGAT------------GCTTGCCATGGTCTGCGTCCTTGTGCTATTCGGGCTCAGCTTGAGCCAGCAG
GCGACGGCGTCCGGCTGCGCTCACTGCGCTGACGAACTCAATC---CGGCTTGTGCTCCCAGGTGCACTGAATATTCCAG
CGCTGAGCATTCCTGCGCTGGCTGCCCCATGCTACAAAGCA------CGTGCTCGCAAAAATGCTTGGATGGTTGCTTTC
ACGAGTGCGGTAGACGGCCCTGAAGCAT-GCCTGCATGCATCTTCGATGGCGCCGTTT-------ACCACCATTTTCCTC
TTCTTTCCTTTCAGCCTTCCATTTC-AGCCAAGCATCCCT----CGCGCGTGTATGCGTGCTGACTGGTGTGAGGCAAAA
TGGCATCCCTCGCGCGTGTATGCG------TGTTATA--GGGTTTGTAATCGTATT-----GTTTCTTTCCTTATTGTT-
--CCTTTTGTTGAGGTATCTTTGTTTGTGTTGAATCAATCAA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr3A_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGGTTCGGTACGCC
ATCTTAGCCCTGCCAAACGATTTCGTTCGGGACGAGAGGCCCCCAGCCCGAACGCCCATTGGCACTGCCCCTACAGGCCC
TTTTTTAGGAACACGGCCTTACAGGCCTCTTCTCTGTAGAAACAAAAAAAAAAGCCCAGAAGCGACACAAAA-GCCCTTC
TTTGCTGGGACAAAATAAACACAAGCCCTTTTT-TGCTGGAACAAAAAATTGCCATGGATCATATGTAAAGTAAAAAAAT
CAAAAAAAAATAGAGTAAAAATGCCAGTCCCATAAAGTTGGTTTGACACGA---AAA-AACCATTAGTGATTACATTGAC
ATGTACGTAAA-GGTAGTATAGGTAAATCCCGAACGCCCATTGCCACTACCCCTACAGGATAATTACCGAACGTCGACAA
TATATGTAAACTCGCCATGTCAAAAAGATAAAAATTGCAATGGGAAAATAAAAGAGT-AAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAAATTGCCATAGCGTTACAGATAAAATTGGCATGCCAAATTGAAAGAAAAATTTGCCAT
-TTTC-TTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAATCTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAT--AAAAAATAAAA-TTTTAACAGAAAAATAGAAAATAGATGTTAAAAAAAGAAATTGCCATGGCGTTGCAGATA
AATTTTCCATGTCAATATAGGAAAAATTGCCATGGCAAATTGAAAGAAAAATTTGCCATC---TTTTTTTT--CATTTGA
ATGTCCTATATTGCCATGGCAATATATGTAAAATTGCCATGTCAAAAAGCTAAAAAATTGCCAT
>chr3D_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGGTTCGGTACGCC
ATCTTAGCCCGGCCGAACGATTTCGTTCGGGACGAGAGGCCCCTAGCCCGAACGCCCATTCCCACTGCCCCTACAGGCCC
TTTTTTAGGAACACCGCCTTACAGGCCTCTTCTCTGTAGAAACAAAAAAAAAAGCCCAGAAGCGACACAAAAAGCCCTTC
TTTGCTGGGACAAAATAAACACAAGCTCTTTTTCTGCCGGGACAAAAAATTGTCATGGATCATATGTAAAGTAAAATATT
CAAAGAAAATTAG-GTAAAAATGCCAGTCCCATGAAGTTGGCTTGACATGA---AAAAAACCATTAGCGATTGCATTGAC
ATGTATGTAAA-GGTAATATAGGTAAATTTGCCCTTTTTTCCAATT----------------------GAAGGTCGACAA
TATAGGTAAACTTGCCATGTCAAAAAGATAAAAATTGCGATGGCAAAATAAAAAAGT-AAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAAATTGCCATGGCGTTACAGATAAAATTAGCATGCCAAATTGAAAGAAAAATTTGCCAT
CTTTTTTTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAAGCTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAT--AAAAA-GTAAA-TTTTAACAGAAAAATAGAA-ATAAAGGTTAAAAAAAGAAATTGCCATGGCGTTGCAGATA
TATTTTCCATGTCAATATAGGAAAAATTGCCATGGCAAATTGAAAGAAAAATTTGCCATC---TTTTTTTT-CCATTTGA
ATGTCCTATATTGCCGTGGCAATATATGTAAACTTGCCATGTCAAAAAGGTAAAAATTGCCAT-
>chr7D_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGGTTCGGTACGCC
ATCTTAGCCCGGCCGAATGATTTCGTTTGGAACGAGAGGCCCCCAGCCCGAACGCCCATTCCCACTGCCCCTACAAGCCC
TTTT-TAGGAACACCGCCTTACATGCCTCTTCTCTGTAGAAACAAAAGAAAAAGCCCAGAAGCGACACAAAAAGCCCTTC
TTTGCTGGGACAAAATAAACACAAGCCCTTTTT-TGCCGGGACAAAAAATTGTCATGGATCATATGTAAAGTAAAATATT
CAAAGAAAATTAG-GTAAAAATGCCAGTCCCATAAAGTTGGTTTGACATGAAAA---AAACCATTAGCGATTGCATTGAC
ATGTATGTAAA-GGTAATATAGGTAAATTTGCGCTTTTTTCCAATT----------------------GAAGGTCGACAA
TATAGGTAAACTTGCCATGTCAAAAAGATAAAGATTGCGATGGCAAAATAAAAAAGT-AAATTTGAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAAATTGCCATGGCGTTACGGATAAAATTGGCATGCCAAATTGAAAGAAAAATTTGCCAT
CTTTTTTTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAATTTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAT--AAAAAAGTAAA-TTTTAACAGAAAAATAGAA-ATAGAGGTTAAAAAAAGAAATTGCCATGGCGTTGCAGATA
TATTTTCCATGTCAATATAGGAAAAATTGCCATGGCAAATTGAAAGAAAAATTTGCCATCTTTTTTTTTTT-CCATTTGA
ATGTCCTATATTGCCGTGGCAATATATGTAAACTTGCCATGTCAAAAAGGTAAAAATTTCCAT-
>chr2D_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGGTTCGGTACGCC
ATCTTAGCCCGGCCGAACGATTTCGTTCGGGACGAGAGGCCCCCAGCCCGAACGCCCATTCCCTCTGCCCCTACAGGCCC
TTTTTTAGGAACACCGCCTTACAGGCCTCTTCTCTATAGAAACAAAAAA-TAAGCCCAGAAGCGACACAAAAAGCCCTTC
TTTGCTGGGACAAAATAAACACAAGCCCTTTTTTTGCCGGGACAAAAAATTGTCATGGATCATATGTAAAGTAAAATATT
CAAAGAAAATTAG-GTAAAAATGCCAGTCCCATAAAGTTGGTTTGACATGG---AAAAAACCATTAGCGATTGCATTGAC
ATGTATGTAAA-GGTAATATAGGTAAATTTGCCCTTTTTTCCAATT----------------------GAAGGTCGACAA
TATAGGTAAACTTGCCATGTCAAAAAGATAAAAATTGCGATGGCAAAATAAAAAAGT-AAATTTTAACAAAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAATTTGCCATGGCGTTACAGATAAAATTGGCATGCCAAATTGAAAGAAAAATTTGCCAT
CTTTTTTTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAATTTGCTATTTCAAAAAGGTAAAACTTGCCATGG
AAAAAT--AAAAAAGTAAA-TTTTAACAGAAAAATAGAA-ATAGAGGTTAAAAAAAGAAATTGCCATGGCGTTGCAGATA
TATTTTCCATGTCAATATAGGAAAAATTGCCATGGCAAATTGAAAGAAAAATTTGCCATC---TTTTTTTC-CCATTTGA
ATGTCCTATATTATCGTGGCAATATATGTAAACTTGCCATGTCAAAAAGGTAAAAATTGCCAT-
>chr2D_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGATTCGGTACGCC
ATCTTAGCCCCGCCGAACGAAATCTTTCGGCACGAGAGGCCGCCTGCCCGAACGCCCATTACCACTGCCCCTACAGGCCC
TTTTTTAGGAACACCGCCTTACAGGCCCTTTCTCTATTGAAACAAAAAA-AA--CACAGAGGCGCAACAAAAAGCCTTTC
TTTGCTGGGACAAACAAC---------------------------AAA-TTGCCATGGATCATATGTAAAGTAAAATTTT
CAAAGAAAATTAGAGTAAAAATGCCAGTCCCATAAAGTTGGTTTGGCATGAAAAAAAAAACCATTAGCAATTACGTTGAC
ATGTATGTAAACGGTAATATAGGTAAATTTGCCCTTTTTTCCATTT----------------------GAAGGTCGACAA
TATAGGTAAACTTGCCATGTCAAAAAGGTAAAAATTGTCATGGCCAAATAAAACAGTAAAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAATGAAATTGCCATGGCGTTATAGATAAAATTGGCATGGCAAATCGAAAG-AAAATTTGCCAT
CTTTTTTTCATTTCAAGGTCCTATATTGCCGTGGCAATATAGGTAAACTTGCCATGAAAAAAAGGTAAAAATTGCCATGA
AAAAAC--AAAAAAGTAAAATTTTAACAAAAACATAGAA-ATAGAGGT----AAAAGAAATTGCCATGGCGTTGCAGATC
AATTTTCCAGGTGAATATAGGAAAAATTGACATGGCAAATTGATAGAAAAATTTGCCATC---TTTTTTTC-CCATTTGA
AGGTCCTATATTGCCATAGCAATATAGGTAAACTTGCCATGTCAAGAAGGTTAAAATTGCCAT-
>chr4B_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGGTTCGGTACGCC
ATCTTAGCCCCGCCGAACGATTTCGTCCGGGACGAGAGGCCCCCAGCCCGAACGCCCATTCCCACTGCTCCTGCATGTCC
TTTTTTAGGAACACCGCCTTACAGGCCTCTTCTCTGTAGAAACAAGAAA-AAAGCTCAGAGGCGACACAAAAAGCCCTTC
TTTGCTGGGACAAAATAAATGCAAGCCCTTTTTTTGCTGGGAAAAAAA-TTGCTATGGATCATATGTAAAGTAAAATATT
CAAAGAAAATTAGAGTAAAAATGCCAGTCCCATAAAGTTGGTTTGACATGAAAA---AAATCATTAGCGATTACATTGAC
ATGTATGTAAA-GGTAATATAGGTAAATTTGCCCCTTTTTCCAATT----------------------GAAGGTCGACAA
TATAGGTAAAGTTGCCATGTCCAAAAGATAAAAATTGCGATGGCAAAATAAAAAAGT-AAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAACAAATTGCCATGGCGTTACAGATAAAATTGGCATGCCAAATTGAAAGAAAAATTTGCCAT
CTTTTTTTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAATCTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAT--AAAAAAGTAAAATTTTAACAGAAAAATAGAA-ATAGAGGCTAAAAAAAGAAATTGGCATGGCGTTGCAGATA
AATTTTCCATGTCAATATAGGAAAAATTGCCATCGCAAATTGAAAGAAAATGTTGCCATC---TTTTTTTT-TCATTTGA
ATGTCCTATATTGCCGTGGCAATATATGTAAACTTGCCATGGCAAAAAGGTACAAATTGCCAT-
>chr5D_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACCGAACGAAAGGTTCGGTACGCC
ATCTTAGCCCGGCCGAACGATTTCGTTCGGGATGAGAGGCCCCCAGCCCGAACGCCCATTCCCACTGCCCCTACAGGCCC
TTTTTTAGGAACACCGCCTTACAGGCCTCTTCTCTGTAGAAACAAAAAA-AAAGCCCAGAAGCGACACAAAAAGCCCTTC
TTTGCTGGGACAAAATAAACACAAGCCCTTTTTTTGTCGGGACAAAAAATTGTCATGGATCATATGTAAAGTAAAATATT
CAAAGAAAATTAG-GTTAAAATG------CCATAAAGTTGGTTTGACATGAAAA---AAACCATTAGCGATTGCATTGAC
ATGTATGTAAA-GGTAATATAGGTAAATTTGCCCTTTTTTCCAATT----------------------GAAGGTCGACAA
TATAGGTAAACTTGCCATGTCAAAAAGATAAAAATTGCGATGGCAAAATAAAAAAGT-AAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAAATTGCCATGGCGTTACAGATAAAATTGGCATGCCAAATTGAAAGAAAAATTTGCCAT
CGTTTTTTTATTTGAAGGTCCTATACCGCCGTGGCAATATAGGTAAATTTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAG--AAAGT----AAATTTTAACAGAAAAATAGAA-ATAGAGGTTAAAAAAAGAAATTGCCATGGCGTTGCAGATA
TATTTTCCATGTCAATATAGGAAACATTGCCATGGCAAATTGAAAGAAAAATTTGCCATC---TTTTTTTT-CCATTTGA
ATGTCCTATATTGCCGTGGCAATATATGTAAACTTGCCATTTCAAAAAGGTAAAAATTGCCAT-
>chr1D_1535
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TAGCCCGGCGGAACGATTTCGTTCGGGACGAGAGGCCTCCAGCCCGAATGCCCATTCCCACTGCCCCTACAGGCCC
TTTTTTAGGAACACCGCCTTACAGGCCTTTTCTCTGTAGAAACAAAAAA-AAAAAGCCCCGAAGACATAAAAAGCCCTTT
TTTGTTGGGACAAAATAAACACAAGCCTTTTTTTTGCCGGGACAAAAATTTGTCATGGATCATATGTAAAGTAAAATATT
CAAAGAAAATTAG-GTAAAAATGCCAGTCCCATAAAGTTGGTTTGACATGAAAA---AAACCATTAGCGATTGCATTGAC
ATGTATGTAAA-GGTAATATAGGTAAATTTGCCCTTTTTTCCAATT----------------------GAAGGTCGACAA
TATAGGTAAACTTGCCATGTCAAAAAGATAAAAATTGCGATGGCAAAATAAAAAAGT-AAATTTTAAC-AAAAAATAAAT
AGGAAATAGAGGTTAAAAAATAAATTGCCATGGCGTTACAGATAAAATTGGCATGCCAAATTGAAAGAAAAATTTGCCAT
-TTTTTTTTATTTGAAGGTCCTATACTGCCGTGGCAATATAGGTAAATTTGCCATGTCAAAAAGGTAAAAATTGCCATGG
AAAAAT--AAAAAAGTAAA-TTTTAACAGAAAAATAGAA-ATAGAGGTTAAAAAAAGAAATTGCCATGGCGTTGCAGATA
TATTTTCCATGTCAATATAGGAAAAATTGCCATGGCAAATTGGAAGAAAAATTTGCCATCTT-TTTTTTTT-CCATTTGA
ATGTCCTATATTGCCGTGGCAATATATGTAAACTTGCCATGTCAAAAAGGTAAAAATTGCCAT-
>SNPs
SSSSS-----------S--S-S----SS-------S-SSS-SSS--------S-----S---S-----------SS----
-----------S--SS-------------S--------------S--------S------S---S------S--------
---SSSS-S-S-S-------S----S---S-------------S-SS-----------------S-S------S-SS---
-------S-----------------S-S--S----S--S-----------S--S-S----S-S-----S------SS-S-
S---SSSS-S---S--S-------------------------S------S--SS------------S---S------S-S
-----S------S-S----------------------S-----S-SS-SSS-S---------S--------S---S----
----S--SSSSSSSSSSSSS-SSSS-SS--------S--------------S----------------------------
------------------------------SS-S----------------------------------------------
----------------------------------------------------------S---S----------S-S----
--------S----S-S---S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---------------------------S------SS-SSSSSSS-----------------------S
-S-------S-----------SSS-------SS-------------------------------------------S---
-------------------------------------S------------------------------------------
----------------------------------S-------------------------------------------S-
-S---SSS--------S-------------------S----SS--------------S-------------------S--
--------S-----S---------------------------------S---S----SSSSSSSS------S--------
------------S-------------------S------S--------------------S--------S---S------
---------S-------S----------S----S-SSSS-------------S---SSSSS------------------S
SS--------------S---S-S-S-S---SSS--S------SSSSSSSSSSSSSS------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
S-------------------------------------------------------------------------------
-----SSS-------------------------------------------------------------S----------
-----------------------------------------------------------------------S--------
----------------------------S-----------------------------------
>forward_400
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AGGACACTTTGGCTACAGGC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_1333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TCGTTCACCATCGACCATCG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>forward_438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACCACCGGAATCATGCACC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_1373
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGCCTTCCATTTCAGCCAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>forward_887
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CGAGTCACATCTC
ACACGCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_2429
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CAAACTTGCCATGTCAAAAAGCT-------------
