>input_sequence_82034
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----------------------------------------ATGAGGCCTCAGGCGCTGCTCCTCGCGTTGGCCGTCGTCG
CCGTCCTCGCAGCTCTGCCCCTCGCACATGGCCAAGGTGAG----GGACCCTTCTTTCTTTCTTGAT-------------
TCGAA-----------------------------------ATC---------------------------------GCTT
CTGTTTTGCTCCT-GCCGAGTAACTCAAAGTCACAA--------------------------------------------
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--------------------------------GTGTAGCAGTTCATTGATATTGGTTG---------CTGCCTGCAGGGG
CAAGCCCGTGGCCGTGCTGCGACAAGTGCGGCGTGTGCACCAAGTCCATCCCGCCGCAGTGCAGGTGCCAGGATGTGTCG
CCGACCGGATGCAACTCGGCTTGCAAGAGCTGCGTCAGGTCCACCGCCGGCTTCCAGTGCGTGGACAGCATCACCAACTT
CTGCGAGCGCCGCTGCACGCCCGCCGCGTGA-------------------------------------------------
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>chr1A_1_TraesCS1A01G021000
CTTAGGAACGGAGGGAGTAGTTAGCTAGTTTTCAGCTCGCCGTAGGAATCGTGATGGGATGGCATGGATCACGCATTCCT
CGCCACGACCATGTAGGGATCTTGCACATTCGAGTGTCGTAGGATGGCATGACCTGTAAGCTTGGCGCGCATGACCATTT
CTTGCTTGTTTTCAGGAGCTCATTTGAGTTCAGATAAATAAGGAGAGAAACAGAAAAACTACCAAGTTGTTAGAGGATCG
CAAAACCTCTGTGTCTTCCATCTCTCACCCACGCGCTCGTTCTCTGTGATCGTGCTTGCTAGTTTCTGCAACAACATGAT
TTTGTGACTGGTCACTGACCTGGCCGGTCGCCTATATGTATAGGGGGCGTTTGAGGAGCCGGCTGTTGATGCTCTAACTC
CATGCTCGGCAACAGGACGGTGGAATCGGCAGCATCAGTTCCCAGCGCATGTACAGCGGGAACTCATCGTTCTCTGATGC
CTTGTCACACACTGATGCCGTACCCATCTCCAGTCTCCACGTTTTTTGAATGAGAAAATACCCAGCACATGGTCTCAGCG
TAGTCAGATTCACAGAAGGAGACGCGATGGGTGCCCTTGTCCCATCCATTCATATGGTCTGAGCGTATCCTAGCCAGAAG
ATACTCCCAGCCTCTAGTATTGGCCTTATTCTTGTACTGGTTGTACTCTTGTTCAAATTATCACAAATTCAAAGCCAATC
CACACAAACCAACCACACAAGTGGAGTACTGTCTGGTTGTACTCTTGTTCAGATTATTCAATGGAGGCGACGGCGCCATG
CGTTGGCAAGTCCCGACATCGACATCAGAGGATGACAAACGGAAAAGTCTTCTCCTATGACTTTTTTCTCTGCCTCAGCC
GAGACTCCTATAAGAAGAAGGCATGCATTCCATACCCATCGCATCAGGCATTAGCGGCGCACACTCGGTCTCAGATAGCC
AAGCCAAACCACGAGCCGGCTCCCATCCTTGCAAGCAAGCATGAGGCCTCAGGCGCTGCTCCTCGCGTTGGCCGTCGTCG
CCGTCCTCGCAGCTCTGCCCCTCGCACATGGCCAAGGTGAG----GGACCCTTCTTTCTTTCTTGAT-------------
TCGAA-----------------------------------ATC---------------------------------GCTT
CTGTTTTGCTCCT-GCCGAGTAACTCAAAGTCACAA--------------------------------------------
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--------------------------------GTGTAGCAGTTCATTGATATTGGTTG---------CTGCCTGCAGGGG
CAAGCCCGTGGCCGTGCTGCGACAAGTGCGGCGTGTGCACCAAGTCCATCCCGCCGCAGTGCAGGTGCCAGGATGTGTCG
CCGACCGGATGCAACTCGGCTTGCAAGAGCTGCGTCAGGTCCACCGCCGGCTTCCAGTGCGTGGACAGCATCACCAACTT
CTGCGAGCGCCGCTGCACGCCCGCCGCGTGATTGCACGGCGGATCATCTCCTGTTGTCGCTTGCCTGAATAATGCCGATT
AGCTTGTGCCTTCAC-TTTCTCTCACTCGTTCGGAGCTTCCTCTGCATGCATCTTGGTGTGGATAGACGCCTAGAAGAAA
TGAGTGTTTGATGATTTCTTGTTGTTTCTTACAATGTTTTAAATAAATGAAGAGCATATTCTATGTTCAAAAT-CTTCTC
GGTTGAAAGTGGATAGGTGTTCATTTCAAGGATGTCAAAAAA-CAACCTGCTCTCAGATGGAGCCTTTTGGCTTCTAGCC
TACCCGAACATCCTATGTTGAACGTGATTTGTTTTGAACATCCTTGATATGACCCTAAATTTTGCTAGTATGTGGGCACG
TCCATGATAAGCATCCATGCCATGTTCGAAAGAAAACGTATTTAATATTATAAATGAAACAAGTACTTAAAACTTACATT
TTAAGTTTTTAACATACCTAATAAATACAAAGGGATAAATTA-AAAACACTAAATGCTTTTCTAAATAAATATTTGAAGG
AATTTTTTTTAAAAGTGCAAGCATATTTTTGAAAAAAAAGAAAAAAAGGAAATGGGAAAATGAAAATGAAACGAAAAAAC
AAAAAATGAACAGAAAGAAGAAAATAACTAGTGGGAAAAAGACCTGTTCGCTAAAGTAAACTGGTCGGCGGTCGCTGAGG
GACTACTAGAACTGTGCATGGTGTCTTTAATTATGATATTTAATTTGCCACACCATGCACCCCAGGGATTCTAAAACTGT
GCATTTTGACGTAAGTTATCTATCACATATCTAAAACTGTGCATTTTGCATTTGAAGAGAAACAAAATAAATGCACAACT
TCAGGGGATGCTCAACATGCATTAAAGAATCCCAAATCAATTTTTTCCTATAATCTAATTCTAACATTTAACCAATTTGG
CATGAATCACCAGAAAAATGGGGCGATTGGAGATTTAAAGTTCATCTAGGCCCTCTAAGTTGGTTTTGATGAATA
>chr1D_974
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-------------AGCCGGCTCCCATCCTT----GCAAGCATGAGGACTCAGGTGCTGCTCATCTCGTTGGTCGTCCTCG
CCGTCGTCGCGGCGCTGCCCCTCGCACAGGGCCAAGGTGATGCCTGGATTCTTCTTTGTTTCGTCACCCATTTCGCCGTC
TCAAA-----------------------------------TTC---------------------------------GCTT
ATGTTTTGCTCGTCGCCGAGTAAGTCGTCAGC------------------------------------------------
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---------------------------------TGTAGCAGTTTATTGACACTGGGTTATTTACGACCTGTCTGCAGGGG
CGAGCCCGTGGCCGTGCTGCGACAAGTGCGGCGTGTGCACCAAGTCCATCCCGCCGCAGTGCAGGTGCCAGGACGTGTCG
CCGACTGGGTGCAACTCGGCTTGCAAGAGCTGCGTCAGGTCCACCGCCGGCTTCCAATGCGCGGACAGCATCACCAACTT
CTGCGAGCGCCGCTGCACGCCGGCCGCGTGATTGCACGGCGGATCATGTCCTATTGTCGCTTGCCTGAATAATGCCGATT
AGCTTGTGCCTTTAC-TTTTG---------TCGTCGCTTCCTCTGCATGCATGTCGGTGTGGATAGATGCCGAGAAGAAA
TGAGCGTTTGATGATTTCTGGTCGTTTCTTAATATGTGTGAAATAAATGAAGGGCATATTCTATGTTCAGAAT-ATTCTC
GTCTGAAAGTGGACAGATGTCCATTTCAAGGATGTCAAAAAAACAACGTGGTCTCAGACGAAGCCTTTTGGC-------C
TACCCGGAAACACTACGTTGAACATAATTTTTTG---ACATCCCTAACAGGAACCTAAATTTTGTTAATAGGCGGGCATG
CCCAAGATAGGCATACAAGCCTGGTCCGAAAGAAAAAAGTATT-----------TGAAACAAGTACTTGAAACAATTATT
TAAAGTTTTGAACATAACCAATAAATATGAAGGGATAAAACGGAAAACAATAAATG------------------------
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>chr1A_995
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----------------------------------GCAAGCATGAGGCCTCAGGTGCTGCTCCTCGCGTTGGCCGTCCTCG
CCGTCCTCGCAGCTCTGCCCCTCGCACATGGCCAAGGTAAG----GGACTCTTCTTTCTTTCTCCATCCATTTCACCCTA
ACAAA-----------------------------------TTGGCTTCTTTTCATCCATTTCCTTGTGACAAAATGGCTT
CCGTTTTCCTCCTTGCCGAGTAAGTCATCAGTTATACTA-CTTCCGTTCCTAAATATAAGTCTTTTAATAGATTTCTATA
TGAACTACATACAGATGTATACAGACGTATTTTGGATGTAGATTCAGCCATTTTG-------TGTAGTTTATATTGAAAT
CTCTAAAAAAGACTTATATTTAGGAACAAAGGTGGTAGCAGTTTATTGACACTGGGTTGCTACT----TATCTGCAGGGG
CGAGCCCGTGGCCTTGCTGCGACAAGTGCGGCGTGTGCACCAAGTCCATTCCGCCACAGTGCAGGTGCCAGGACGTGTCG
CCGACCGGGTGCAACACGGCCTGCAAGAGCTGCGTCAGGTCCACCGCTGGCTTCCAATGCGCAGATAGCATCACCAACTT
CTGCGAGCGCCGCTGCACAGCGGCGGCGTGATTGCACGGCGGCTCATGTCCTGTTGTTGCTTGCCTGAATAATG------
--CTTGTGCCTTTACTTTTCTCTC-CTCGTTCGGAGCTCCCTCTGCATGCATCTTGGTCTAGATGGATGCAGAGAAGAAA
TTAGCGTTTGATGCTTCCTTGTCGTTTTTTACTACGTCTGAAATAAATAAAGAGCATATTCTATGCTCAATATTCTTCTT
GATTGAATGT----------------------------------------------------------------------
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>chr1D_996
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-----------------------------------CAAGCATGAGGCCTCAGGTGCTGCTCCTCGCGTTGGCCATCGTCG
CCGTCCTCGCAGCTCTGCCCCTTGCACATGGCCAAGGTAAC----GGACTCTTCTTTCTTTCTCCATCCATTTCGCCGTG
TCAAAATGGCTTCTTTCTTCATCCATTTCCTTGTGACAGAATC---------------------------------GCTT
CCATTTTCCTCCTCGCCGAGTAAGTCATCAGTTGTACTCCCTCCCGTTGCTAAATATAAGTCCTTTTAAAGATTTCTATA
TGAACTACATACGGATGTATATAAATGTATTTTTGATGTAGATTCAGTCATTTTGGTCCATATGTAGTTTATATTGAAAT
CTTTAAAAA-GATTTATATTTAGAAACAGAGGGAGTAGCAGTTTAGTGACACTGGGTTGTTACA----TGTCTGCAGGGG
CGAGCCCGTGGCCGTGCTGCGACAAGTGCGGTGTGTGTACCAAGTCCATCCCGCCGCAGTGCAGGTGCCAGGACGTGACG
CCGACCGGGTGCAACTCAGCTTGCAAGAGCTGCGTCAGGTCCACCGCCGGCTTCCAGTGCGCGGACAGCATCACCAACTT
CTGCCAGCGCCGCTGCACGGCGGCGGCGTGATT-CACGGCGGCTCATTTCCTGTTGTTGCTTGCCTGAATAATGCCC---
-----GTGCCTTTACTTTTCTCTCACTCGTTCGGAGCTCCCTCTGGATGCATCTTGGTCTGGATGGATGCAGAGAAGAAA
TGAGCGTTTGATGCTTCCTCGTCGTTTTTTACTACGTCTGAAATAAATAAAGAGCATATTCTATGCTCAAAAT-CTTCTT
GGTTGAA-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----------------SSSS-------------------S--------------------------
-------------------------------------------------S--------------S---------------
--S-----------------------------------------------------------------------------
-----------------------S---SSSS-SSS---------------------------------------------
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-------------------------------------------S-----S-S---S-S------------S---------
-S-----------------------------------------------------------------------S------
--------S----------------------------------------------------S------------------
---------------------S-------------------------S--------------------------------
------------S------------------------------------------------------S---S--------
----S-----------------S---------S----S-S----------------------------------------
-------------S--S---S--------------------------S--S-------S-S-----------SSSSSSS-
------S-S-SS---S-------S-S----S--SSSS------S-S-S-S--S-----------S--S--S-S-----S-
S---S----S----S--S---SS--S----------SSSSS--SSSSSSSSSSS--------------S----SSSS---
-S-------S------S-S--------SS----------SSS-------S------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_831
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-----------CCCGACATCGACATCAGAGG-------------------------------------------------
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>reverse_2362
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-----------------------------------------AATTTGCCACACCATGCACC-------------------
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