>input_sequence_82018
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------------------------------------------------------ATGGCGGCGCCGGGCGGGCCGCTGAT
GGTCGTGCTCAAGGAG---------------------GG------TCGGCGGACGTCTCCATCCTTCAAGGTGCAGGTCC
TCGGTGGCGGCGGCAAGGAGTGGAAGGTGACGGACGACATCGGCGAAACAACGCTCTTCATTGGGGGGAACGGTTCCTTC
TGCGTGTCCACGAGGGAGCACCCGGAGCTCAGGGCCGGCTGCGTCTACTACACCGAGGACGATCCGGGGCTATACAAGG-
-----------ATGCTCGCGACCGCTACTACAATGGCATTAATTGGGGTATTCACCCTCAAGGATGGCAGCCGGGAGAAG
GTCGAGGGCCTTGC-----------GCTGGTCGCCACCAGTGTGGTTCATGCCTTCCATCCCATTGTG-ATGGATACTGT
GACTGA--------------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G310800
TTTTTTCTTAGGACAGCATTGACGTAGCCTCAAAAATAAGAAAGAAAGAAAATCACCATTGAGGTGGGTGGCTCCGTACA
ATCAGGAACGGAGCTCACGTACAACCACTGGTGTCAGTTGACACCAGTGGAGTTCAGCGTTTCAATTAGCATGCTTAATA
AATTTTGTCTTTGACGCCAGCCAGAAAGATCGATTGACACCAACCCGGCCGACGGAAAGCCGCTCCACAAACCCAAAATG
CCAGCCCAATTACAGTCGTGCAAACAAAAAGGCTGACGGGAAGCCCGCAACACGTTAATATGAGAGTTAATAGCATCCCA
GGTACCCTAACTTGCATAGAATGTGATGATTCAGTTTCAAACTTGCAAAATTTGACTCCACCATACCCCAACTTGCACCT
CATGTGATGATTTAGTCTCAAGCCAATCACAACTCGACAATTGGCAGCTAGGTTGCCGGACCGGTCAGCGCACGCACTTT
TGCAGAAACCCCCCCTGCTGTTTTTCCTATACCCCAACTTGCAACAGCTGTAAATGGCAACAATGGTTAGCAACTGACAG
AATGGAATCACGATGCAAGACTGGGAATATACCATTTCACAGAATAGCATTTACCTGGTTAGTGCTCATGAGATACAAGT
GAAACACTGAGAGGCCACCAACAAACCAAACCGCGATAAATGTGTACT---CCAGAGCGATAGAAGCAGGGGTCTTTGCC
ATTGCCTTCCATATTGTTATCTGCTCTGTAGGGCTCCTGGAGGCTTGCGCTCCCGCGCGACGGAGTTGAGCCCGTCGCCA
CAGCTGCGTCCGGGAAGTGAAGTC-TGGTGCACTCACGCAACGGCGTCAAGGATGCCATCCACTACAATGGCAGGTTCTA
CTCGATCACATACTTCGGCGAAGTAGAGGCATGGGATGAGTGCGGCGCCGATGACCCAGGTGTGTTCGCAAGTGTGGTGA
TCTCGCCGAG----------GCTGCCAGCCGACACCGAGCACCGCAAGTACCTAATGGCGGCGCCGGGCGGGCCGCTGAT
GGTCGTGCTCAAGGAG---------------------GG------TCGGCGGACGTCTCCATCCTTCAAGGTGCAGGTCC
TCGGTGGCGGCGGCAAGGAGTGGAAGGTGACGGACGACATCGGCGAAACAACGCTCTTCATTGGGGGGAACGGTTCCTTC
TGCGTGTCCACGAGGGAGCACCCGGAGCTCAGGGCCGGCTGCGTCTACTACACCGAGGACGATCCGGGGCTATACAAGG-
-----------ATGCTCGCGACCGCTACTACAATGGCATTAATTGGGGTATTCACCCTCAAGGATGGCAGCCGGGAGAAG
GTCGAGGGCCTTGC-----------GCTGGTCGCCACCAGTGTGGTTCATGCCTTCCATCCCATTGTG-ATGGATACTGT
GACTGATTTCATAGCTGTTGGGGTGGGTTAAGTGCTACTATATTAT-GTGCATTACTACAGTATAGATGCAGCAACAGGC
TTATGAATCTGAATTAATCAAACAATTCGGCTTGATTTCCAGTAAAAAGGCTTCAGTAGAAACTTAGGAAACAGTTTGAT
TTTCTGCTTCTTCTTTTCGTCTTCCAGATTGTGGCATAGTAAACAAAGGTGGCCCTTTTAGGTTGCTTTTTAAGTATTCT
GATGGAACAATTTAATCAGTATGCATGACTCAGACTTAATTTTATGCTATGATGATTGCAGCTCATATTAGTACGTAATT
ATTGCCCGAAGCTTTAATTTAGAACGTTGGGGTTCGGGCCACCTTTCATGACTTTTTTTATGCATGGCTCAGACCCTTAT
TGAAGTAATTATTGCAGCTCTTATTAGTAAGTAATTATCTGTTTGGGTGAGGTTTCTGGATTAACAGGTTTAATTCAGAA
CTAAACAGAGGAGAACAGTACTTATAGCTAGAGAAGACTGTTTGGTTTGCTGGGTTCATAATAGCATTTTGTGTTTGTGT
TTTGCCTTTTGATTGTTTCAAACTGCAACCAATTCTGGAATATGATCACGGCACTGCATTTGCCTGCCTTTTGATTATCA
TGCAGATTTGAGGTGTGGGGTGTTGAGAGGGTACATTACATTTCCATCCACATCGGTGGCGTTCAGTTTTGCCTTCTTGT
TGATTATTGAGAGGAATCAAATTGTCTTTTCA-CCAATTTCTGTGGTCATTGGAGTAGCATCCTCTGCTTTCTCTTACCA
GCACTCCAGCAGAGCATGACTGTTACTGCATGTTTCTGAAGATATACATGCTGAAGTTTCAGTAACAACTAAGGAGAACA
TTTGGAAACAAAATATGATTTAAGATACACACCAAGTAGCAGGTAACATCATAAATTAGGATTTTTGTACTAGCTAGTAT
GCTGAAGCAGGTTGCAGGGGCCAGATTTCTACTGCCCCCTGATAATGG
>chr5D_304
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---------------------------------------------------------------GAGGTAATAGC-TCCGA
GGTACCTTAACTTGCACAGAATGTGATGATTCAGTCCCAAACTTGTAAAACTTGACTCCATCATACCCCAACTTGCACCT
CATGTGATGATTTAGTCCCAGACCAATCACAGCTCGACAATTGGCAGCCAGGTGGCTGGACCGGTCAGCGCACGCACTTT
TGCAGAAACCCCCC-TGCCGTTTTCCCTATACCCCAACTTGCAACAGCTGTAAATGGCAACAATGGTTAGCAACTGACAG
AATGGAATCACGATGCAAGACTGGGAATATACCATTTCACAGAATAGCATTTACCTGGTTAGTGCTCATGAGATACAAGT
GAAACACTGAGAGGCCACCAACAAACCAAACCGCGATAAATGTGTAGACAACCAGAGCGATAGAAGCAGGAGTCTTTGCC
ATTGCCTTCCATATTGTTGTCTGCTCTGTAGAGCTCCTGGAGGCTTGCGCTCCGGCGCGACGGAGTTGAGCCCGTCGCCA
CAGCTGTGTCCGGGAAGTGGAGTC-TGGTGCACTCACGCAACGGCGTCAAGGATGCCATCCACTACAATGGCAGGTTCTA
CTCGATCACATACTTCGGCGAAGTGGAGGCATGGGAGGAGTGCGGCGCCGATGACCCAGGTGTGTTCGCAAGTGTGGTGA
TCGCGCCGAGGCTG----CTGCTGCCAGCCGACACCGAGCACCGCAAGTACCTAATGGCGGCGCCGGGCGGGCCGCTGAT
GGTCGTGCTCAAGGAG---------------------GGC------CGGCGGACGTCTCCATCCTTCAAGGTGCAGGTCC
TCGGTGCCGGCGGCAAGGAGTGGAAGGTGACGGACGACATCGGCGAAACAGCGCTGTTCGTTGGGGGGAACGGTTCCTTC
TGCGTGTCCACGACGGAGCACCCGGAGCTCAGGGCCGGCTGCGCCTACTACACCGAGGACGATCCGGGGCCATACAAGG-
-----------ATGCTCGCGACCGCTACTACAATGGCATTAATTGGGGTATTCAGCCTCAAGGATGGCAGCCGGGAGAAG
GTCGAGGGCCTTGC-----------GCTGGTCGCCACCAGTGTGGTTCATGCCCTCCGTCCCATTGTG-ATGGATACTGT
GACTGATTTCATAGCTGTTGGGGTGGGTTAAGTGCTACTATATTAT-GTGCATTACTACAGTATAGATGCA---------
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>chr2D_749
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-------------------------------GGCTCGTGGAGGCTTGCGCTCCCGCGCGACCGAGTTGAG----TCGCCT
CAGCTGTGTCCGGCCCGTGGAGTCTTGGTGCACTCACGCAACGGCGTCGAGGATGCCATACACTACAATGGCAGGTTCTA
CTCGATCACATACTTCGGTGCAGTGGAGGTGTAGGAGGAGCGTGGCGCCGACGACCCTGGCATGTTCGCCAGCGAGGTTA
TCGTGCCGAGGCTGCTAGCTGCTGCCGGCCGACATGGACCACCGCAAGTACCTCATGGTGACGCCAGGCGGGCGGCTGAT
GGTCGTGCTCAAGGAG---------------------GG------TCGGCGGACATCTCCGTCCTTCAAGGTGCAGGTCC
TTGGTGCAGGCGGCGAGGAGTGGAAGGTGACGGACGACATCGGCGAAACCGCGCTGTTCGTCGGGGGGAACGGTTCCCTC
TGCGTGTCCACGAGGGAGCACCCGGACCTCAGGGCTGGCTGCGTCTACTACACCGAGGACGACCCGGTGCGATACAAGG-
-----------ATGCTCGCGACCGCTACTACAATGGCATC----GGGGTATTCAGCCTCAAGGATGGCAGCCGGGAGATG
GTCGAGGGCCTTGGGCGGCAGCGGAGCTGGCCGCCACCGGTGTGGTTCATGCCTTCCATCCAGTGATG-ATGGATACTGT
GACTGGTTTCATAGCTTTTGGGGTGGGTTAAGTGCTAATATATTATTGTGCATTACTATAGTACAGATGCAGTAACAGGA
TTCTGAAT------------------------------------------------------------------------
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>chr2D_749
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-------------------------------GGCTCGTGGAGGCTTGCGCTCCCGCGCGACCGAGTTGAG----TCGCCT
CAGCTGTGTCCGGCCCGTGGAGTCTTGGTGCACTCACGCAACGGCGTCGAGGATGCCATACACTACAATGGCAGGTTCTA
CTCGATCACATACTTCGGTGCAGTGGAGGTGTAGGAGGAGCGTGGCGCCGACGACCCTGGCATGTTCGCCAGCGAGGTTA
TCGTGCCGAGGCTGCTAGCTGCTGCCGGCCGACATGGACCACCGCAAGTACCTCATGGTGACGCCAGGCGGGCGGCTGAT
GGTCGTGCTCAAGGAG---------------------GG------TCGGCGGACATCTCCGTCCTTCAAGGTGCAGGTCC
TTGGTGCAGGCGGCGAGGAGTGGAAGGTGACGGACGACATCGGCGAAACCGCGCTGTTCGTCGGGGGGAACGGTTCCCTC
TGCGTGTCCACGAGGGAGCACCCGGACCTCAGGGCTGGCTGCGTCTACTACACCGAGGACGACCCGGTGCGATACAAGG-
-----------ATGCTCGCGACCGCTACTACAATGGCATC----GGGGTATTCAGCCTCAAGGATGGCAGCCGGGAGATG
GTCGAGGGCCTTGGGCGGCAGCGGAGCTGGCCGCCACCGGTGTGGTTCATGCCTTCCATCCAGTGATG-ATGGATACTGT
GACTGGTTTCATAGCTTTTGGGGTGGGTTAAGTGCTAATATATTATTGTGCATTACTATAGTACAGATGCAGTAACAGGA
TTCTGAAT------------------------------------------------------------------------
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>chr2D_755
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-------------------------------------TGGAGGCTCGCTCTCCCGCCCGACGGTGTTGAGCCCGTCGCCA
CGGCGGAGGCCGGCACCTGGAGGC-TGCGGCACAGGCGCAACGATGTCGAGGACGCTGTCCACCACGAGGGCAGGTTCTA
CTCGATCACATACTCCGGCCAAGTACAAGCGTGGGAGGAGCGCCACACCGACACTCCCGGCATGTTCGCAAGCACGGTGG
TTGCACCGAGGCTGCTA----CTGCCGGTCGACTTGGACCATCGCAAGTACCTCGTGGCCGCCCCGGGCGGGCGGCTGAT
GGTCGTGGTCAAGGAG---------------------GGCACGGGTCTGCAGACATTGCCATCCTTCAAGGTGCAGATCC
TCGACGCCGGCAGGGGGGAGTGGAAGGTGACAGACGACATCGACCAAGCATCGTTGTTTGTCGGGGGGAACGGTTCCCTC
TGCGTGTCAACA----AGCACCCGGAGCTCAGGGCCGGCTGCGTTTACTACACTGGGGATGATC------------AGG-
-----------ATGCTCGCAACCACTACTACAGTGGCTTC----TGGATGTT---------------CAGCCGAAAGAAG
GTCGAGGGCCTTGGGCGGTACCGTAACTGGCCACCGCCGACGTGGTTCACGCCTGCCATTCCATGATATATAGATATGGT
GACTGGTTTCATAGCTTGT---GTGGGTGAAGTGCTTTATTATTAT-GTGCATTACTACAGCACACAGCCTTG-------
---------TGAATTAAGGAAACAGTTCGGCTTGATTTTCAGTTTCTTCTTTTTC----------AGGAAACAGTTTGAT
TT-CAGCTTCTTCTTTTTGCCTCTCAGATCCCTGAACCGCAAAAAAAGGTGGCCCTTTTAGGATGCTTTT-AAGTTTTAT
GAGCGAACAGTTTAATCAGTGTGCAGGGCTCAGACTTATTTTTTTGCTATGATGATGGCAAGCAATATTAGTAAGTAATT
ATTGCC--------------------------------------------------------------------------
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>chr2D_755
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-------------------------------------TGGAGGCTCCCGCCCCCACGCGATGGCGTTGAGCCCGTCGCCA
CGTTGGAGGCCGGCTCGTGGAGGC-TGTGGCACTCACGCAACGGCGTCAAGGACGCTGTCAACCACGAGGGCATGTTCTA
CTCGATCACATACTCCGGCGAGGTGGAGGCATGGGAGGAGCGTGACACGAAAGCTGCCGGTGTGTTCACGAGCGCGGTGG
TCGCGCAGAGGCTACT-------GCCACCTGATGCTGAGCACCGCAAGTACCTCGTGGGGGCGCCAGGCGGGCGACTGAT
GGTCGTGCTCAAGGTCAAGGAGACCGAACAGACTACTGGC------CAGCGGACTTGC---TCCTTCAAGGTGCAGGTCC
TCGATA---GCAGGGAAGGGTGGAAGGAGACGGACGACATCGGCGACAACTCGCTGTTTGTCGGGGGGAACAGTTCCCTC
TGTGTGTCAACGAGGGAGCACCCGGAGCTCAGGGCCGGCTGCGTCTACTACACCGAGGATGATCTGAGGCCTCCGAGGCC
GTGGAATGACAATGCTGGTGTCCACTGCTACAATGCTGTC----GGGGTGTTCAGCCTCAAGGATGGCAGCCAGGACAAG
GTCGAGGGCCTTGGGC----------------------------------------------------------------
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>chr5D_1443
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--------------------------------------------------------------------GCAGCAACAGGC
TTATGAATCTGAATTAAGCAAACAGTTCGGCTTGATTTCCAGTAAAAAGGCTTCAGTAGAAACTTAGGAAACAGTTTGAT
TTTCTGCTTCTTCTTTTCGTCTTCCAGATTGTGGCATAGTAAACAAAGGTGGCCCTTTTAGGTTGCTTTTTAAGTATTCT
GATGGAACAGTTTAATCAGTATGCATGACTCAGACTTAATTTTATGCTATGATGATTGCAGCTCATATTAGTAAGTAATT
ATTGCCCGAAGCTTTAATTTAGAACGTTGGGGTTCGGGCCACCTTTCATGACTTTTTTTATGCATGGCTCAGACCCTTAT
TGAAGTAATTATTGCAGCTCTTATTAGTAAGTAATTATCTGTTGGGGTGAGGTTTCTGGATTAACAGGTTTAATTCAGAA
CTAAACAGAGGAGAACAGTACTTATAGCTAGAGAAGACTGTTTGGTTTGCTGGGTTCATAATAGCATTTTGTGTTTGTGT
TTTGCCTTTTGATTGTTTCAAACTGCAACCAACTCTGGAATATGATCACGGCGCTGCATCTGCCTGCCTTTTGATTATCA
TGCAGATTTGAGGTGTGGGGTGTTGAGAGGGTACATTACATTTCCATCCACATCGGTGTCATTCAGTTTTGCCTTCTTGT
TGATTATTGAGAGGAATCAAATTGTCTTTTTCGCCAATTTCTGTGGTCATTGGAGTAGCATCCTCTGCTTTCTCTTA---
-----CCAGCAGAGCATGACTGTTACTGCATGTTTCTCAAGATATACATGCTGAAGTTTCAGTAACAACTAAGGAGAGCA
TTTGGAAACAAAATATGATTTAAGATACACACCAAGTAGCAGGTAACATCATAAATTAGGATTTTTGTACTAGCTAGTAT
GCTGAAGCAGGTTGCAGGGGCCAGATTTCTACTGCCCCCTGATAATGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S---S-
------S---------S------------------SS--------S----S---------S-------------------
-----------------S--SS---------S----------------S----S--S-----------------------
--------------S---S-----S-------------------------------------------------------
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----------------------------------------------SS----------------------S---------
------------------S-------------------------------------------------------------
------S------------S------------------------------------------------------------
------------------------------------S-------------------------------------------
--S-----------------------------------------------------------------------------
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------S-------------------------------------------S----S---S--------------------
----------------------------------------------------------------------S---------
------------------------------------------------------S-------------------------
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-----------------S------S-------------------------------------------------------
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---------S---------------------------------------------------------------S------
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-------------------------------------------S------------------------------------
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--------------------------------S-------------------S------S--------------------
----------------------------------------------------------S-S-------------------
------------------------------SS---------------------------------------------SSS
SSSSS--------------------------------S---------------------------------------S--
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>forward_711
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---------------------------------------------------CCAGAGCGATAGAAGCAGGG---------
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>reverse_2242
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-CACTCCAGCAGAGCATGACT-----------------------------------------------------------
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