>input_sequence_82004
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----------------------------------------ATGGAACAAGCTAGCAGTGCGCAGGAGGAGCCTAGCCTTG
AGCTCACCCTGGCAATGGCGGTGACAGCTGCGCCCGGCGGCTTCTTCCTCTGCGTCTACTGCGACCGCAAGTTCCGCAGT
TCGCAGGCGCTTGGCGGCCACCAGAACGCGCACAAGACCGAGCGCAGCGTCGCCAAGCGCCGGCTGGAGATGGCCGCCGC
CAAGCGCCGGCGGGATATCGCCGCCACCAAGCGCGCGCAGCACGTGAGTTATTCCCTGTCTTTGGCTTGGAAGGCGAGGG
AGAAGGCTGCTCCTCCTGGGATGCTTGGGCCTACAGGAGGCAAGCGCGCCAGAAGCTCGTTGGAGCGCGCCGA------C
GAGCTGGACTTGTCTCTCCGGCTATGA-----------------------------------------------------
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>chr4D_1_TraesCS4D01G309800
GCCTTGCGCGTCATGTTTCCGAAACAAAGATCTTGTTGCAATAGTCAACGGTGTTTCTGAAACAAAACTCTTGTTGCAAA
GAAGGATCATACGCAGAGATGCTCAAACCGATCTATTGTTGCAATAATCACCGATGTGTTTCTGAAACAAAACTCTTGCT
GCAATAGTCATTGTTGTTTCTGAAACAAAACTCTTGTTGCAAAGAAGGGATCCTAAGCTGAGCAACCTAGATCTGATGAC
TAGCGAGGCGGCGGATCTTTTAAAAGATCCGCCGGCTGACGCGTAGCACGCCCCAAAAACTATTAAAGTTTTGTTAGTTT
TTTCCCTTTTCTTGCAGCTCCATGAAAAAATGTATACTGTTGGATACCCACAAGGAAAAGTGTATACTGTTAATCCAGAC
ATGCACACATTAATTATATTGTTATTAAACAAGGAAGTGGATTGTTTCCAAATGAAGCAGACGTAATCCCTTTTTTGCGT
TGCTCATTTCTCCTGAAAGCTGCATACAAGTTGTTGTTTTGTTTTGTATTCATCTGTGTCTGTGTGTCAGTGCCGTCTTT
CCAGTGCTATCTGTAACTTTCCAATTCATCCTTGTGTCAATGAGACAGAAATGCCCCCGCCGAACAACGAGAGGTGAACC
TGACATGGTGTAATGCAAGCTGCAAACTGGCAATTTACAAAAAGTTTCAGGTCTGTTTTGTACATTTTGCAATGGAGTGT
GTGGATGTTCAATCCTGTACCTCAGGCACATATCCAACGGACCACATCGTCCTGGATCATGGTATCATATGAATGCCGGT
ATCACTGGATATGCACTCCACACTCGTCACCCGGCCGTCCATTTATTGGCGATGGGTCTGCTAACCACAGCAATCAGTTT
GCTTGGCGACTTAACCTCTTCAACCTAGCTAGCTCGGCGCACAACCAACCACACGAACACGACACACAGCCACTAGCAGA
CATAGACTAGCAAGCTAGGAGTAGCTAGCATACTGCATCAATGGAACAAGCTAGCAGTGCGCAGGAGGAGCCTAGCCTTG
AGCTCACCCTGGCAATGGCGGTGACAGCTGCGCCCGGCGGCTTCTTCCTCTGCGTCTACTGCGACCGCAAGTTCCGCAGT
TCGCAGGCGCTTGGCGGCCACCAGAACGCGCACAAGACCGAGCGCAGCGTCGCCAAGCGCCGGCTGGAGATGGCCGCCGC
CAAGCGCCGGCGGGATATCGCCGCCACCAAGCGCGCGCAGCACGTGAGTTATTCCCTGTCTTTGGCTTGGAAGGCGAGGG
AGAAGGCTGCTCCTCCTGGGATGCTTGGGCCTACAGGAGGCAAGCGCGCCAGAAGCTCGTTGGAGCGCGCCGA------C
GAGCTGGACTTGTCTCTCCGGCTATGATCCATCCGCTGCAAGTTTGTCCAACAGCTTGGCGCCCCACCCTTGTTATCACA
TGTCACCCGCTAGGTAGGTGTGCGTTTTGGTACATCAGAGTCTAGCTACTTAATCTGGTGAACTGTTTGTTCCATGCTCT
TGTGCGTGCAGTGGATTCATCTGGTCTTCTAGTTGAATTCCTCTAGTCGGTCTATTTCCATGCTGGCCAGAAACACAGCC
TGCTAATTTACATTTACACTTACGTAGTTTTCTGGGGGAGATCATATTAATTTGGTGTGTTGGTTTCTATATATGTTTGC
TCTCATCCGCTGATCGATCTGGTTTGTATGAGATCTTAATTTGATTCAAGACATAGAACTTCTGGATATTCCATGAACGT
TACAGTACACTACTCCTTATCCATTGCCTTCCACATCATTCTTCT-----------------------------------
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--------------------TATATATTTGTTTCGGGGTGTTGCATTCTACTATACACGACTCTTGTCTGGCGAGAACCT
CACTAGAGGAGCTAATGAGCTATATGTAACCTAAAGAACTTTAAAAGTGGTAAAAATGGCAATTGTTTTGCTAAATGGTG
TAATTAGCATAAAAATGTCAAAGG----GGCAAAAACTGGAATTCCCTCCAAAAACTATAATATACCGTGCGAACCCTAG
CAATTATGCTTATAGAAGAATTCTTTCAT---AATCACACACCATGGCACAAGTACCAAAGGAAAAATATTGATCT----
------TAGCTAGAGCCGCCACATCCATTTTGTGCGGGAAGGATCGAGGTGTCTACCAAGGATGAATACATAGTGTACTA
ATGTATAAGACATTTGAAAAATGTAAATCCCACTTAAAATTTCCTAGCTCTTGTGTC--CACATATACCACATCTGCTAC
CTTCAGAGTATTATCTCATGACAATCAGTTAAATTTGACCAACAGGAGAGCGTCCAATATCAACGTTGAGGGGATATCAA
AACAAATCAAATGCAACAATAACATGTTTATTTCAG-----AAAAAATAACTTACCGTGGATAGGA
>chr4A_828
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---------------------------CACCCGGCCGTCCATTTAATGGCGATAGGTTTGCTAAGCACAGCAATCAGTTT
GCTTGGCGACTTAACCTCTTCAACCTAGCTAGCTCGGCGCACAACCAACCACACGAACACGACACACAGCCACTAGCAGG
CATAGACTAGCAAGCTAGGAGTAGCTAGCATACTGCATCAATGGAACAAGCTAGCAGTGCGCAGGAGGAGCTCAGCCTTG
AGCTCACTCTGGCGATGGCGGTGGCACCTGCGCCCAGCGGCTTCTTTCTCTGCGTCTACTGCGACCGCAAGTTCCGCAGC
TCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGACCGAGCGCAGCGTCGCCAAGCGCCGGCTGGAGATGGCCGCCGC
CAAGCGCCGGCGGGAGATCGCCGCCGCCACGCGCGCGCAGCACGTGAGTAATTCCCTGTCTGTATCTTGGAAGGCGAGGG
AGAAGGCTGCTGCTCCTGGGATGCTTGGGCCTGCAGGATGCAAGCGCGCCAGAAGCTCGTTGGAGCGCGCCGACGAGGCC
GAGCTGGACTTGTCTCTCCGGCTATGATC---------------------------------------------------
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>chr4A_1753
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------------------------------------------------------------------------------GT
TACAGTACACTACTCCTTATCCATTGC-TTCCACCTCATTCTTCTTAGGCCAACTGCACCGCGCGACCCCAAACGAACGT
CCGTTTTGTCCTGTTTTTGTTCCTTTGGGTAGGGATTTGGGGTCGTGTCCGGGCCTGTCCTGGGATGCGGTGGCCGTGCG
CCCAGCGCGCGGCCGCATCCTTTTGCCTCATCCTGTCCGTCAGGGCCAAGAAATGCCCAAATTTGCATTAAAACTACTTT
CAAACCCAAATATTTGTCTGAAAATTAAAATAGTTTTACAACCCAATTGAAATTGTCTTTAATAAAATAGTTTTACAACC
AAATCGAAATTATCTTGACTGAACATAAAATGGAGAAATACATCTATTGGTTACCAATATGATCCCACACGTGCTCAACC
AAGTCATTTTGAAGATTCACATGAGTGTGCCAATCACGCATCTCACGGTGGAATTGGGCAAACTGTTCAATTGTGGCCGG
GTCTTGGTGCAGGGGCTCAATATTTTTCACCTTGGTAATCAAATCCTTCGTCGAAGATACTCTCATCCCGCTCGTCCTCG
ACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCCTTCATCCCATCACAGTGCAGGGTTTCG
AACGATACCCCACCGGGATTGAAGCACACCAAAAGCGCGTTCCACATCCTTTCTAACACTCTCTTGCATTTGGGCAAATC
TCTTTCTCTTCTCACCTTGGGGTTTCGAGATTGTCTTCACAAAAGTTGACCACTGAGGATATATACCATCTGCTAAATAG
TATCCCTTGTTGTAATGGTGGCCGTTGATCTCAAAGTTGACAGGTGGGGAGTGGCCTTCTGCAAGCCTCGCGAAGACTGG
AGAACGCTGCAGCACGTTGATATCATTGTGAGAACCTGCCATGCCGAAGAAAGAATGCCATATCCAAAGATCGTGTGATG
CCACCGCTTCTAATATGACAGTGCACCCGTTAACATGCCCCTTGTACTGGCCCTGCCAAGCAAATGGACAGTTCTTCCAC
TCCCAGTGCATACAATCTATGCTGCCAAGCATACCTGGAAATCCTCTAGCTGCGTTGGTCGCCAACAATCTCTCTGTATC
AGCGGCAGTTGGCTGCCTCAAGTACTCTGGCCCAAAGACCTCGATCACAGCCTGGCAAAACTTGTACATTGACATCAGAC
ATGTTGTCTCACTCATACGCACATACTCATCCACCAGATCGCCTGGAATTCCATATGCAAGCATGCGGATGGCCGCGGTG
CATTTCTGATAGGAGGAGAATCCAAGCTTGCCAAGGGCATCCGTCTTGCACTCGAAGTATGGGTCATGAGCAACCACTCC
CTCTCGGATACGATTGAACACATGCCTTGCCATACGAAAANNNNNNNNNN------------------------------
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----------------------------------------------------------------GGCTACAGGCCGCTCT
GGAGCTCTCGTCGGAATCTGCCTCGGCCGCCGTGGTACGTCACCGGCAGTCGTGTCTGACTCTACCACCGGCAAGGACGG
CCACGGCCAAACCTCCTCCGATCGACGACCAAAACTACGGCGGAAGCGCGGGCGTGGTGGTGGCCATGTCGAGACGTGGT
TTGGTATGGACGGCGGGGGGGCTGCGCGGTGAGGAGGCGGCCGGAGAATAGCGGCGGCGGGGCGGGCGGGGCGGGGAGAG
AGGGTGAAGCGTTGGGAGCGGAGGGACTGCTAGTGTCCCCGACAGGCGGGCCAGGGGAGGACAAGCGCGCGCGTCCCGCC
CGTCCGCGTGGTGTCCGTTTCACCCCAAAACCGGCGCAAGTTTGGGCCGGGAATGGGTCGAAAGCGGACACAAAGCGGAC
AAAAGTCCGTTTGCTCCCGCGCGCTGGGCCGCCTTTTTTATCCCTTTTACCCCAAACGGACGGGGCCGAACAGGATAGGG
TCGCGCGGTGGAGTTGGCCTTATATATTTGTTTCCGGGTGCTGCATTGTTCTATACATGACTCTTGTCTCATGTAAACCT
CACTAGAG--------GAGCTATATGTAACCTAAAGAACTTAAAAAGTGGTAAACTGGCAATTTG--TTGCTAAATGGGA
TAATTAGTATAAAAACGTCAAAGTCGGCGGCAAAATTTGGAAGTCCCTCCAAAAACTATAATGTATCGTGTGACCCCTAG
CAAGTGTGCTTATAGAAAAATTCTTTCATCATAATCACACACCATGGCACAAACACCAAAAGAAAAATATTGATCTTAAA
AAGCCATAGCTAGAGCCGCTACATCCATTTTGAGCGGGAAGGATCGAGGTGTCTACTAAGGATGAATACATAGTGTACTA
ATATATAAGACATCTGAAAAATGTAAATCCCACTTAAGAGTTTCTTGCCCTTGTGTCCACACATATACCATATCCACTAC
CTT--GAGTATTATCTCATGACAATCAGTTAAACTTGACCAATAGGAGAGCATCCAATATAAACATTGAGCGT-TATCAA
AACAAATCAAATGCAACAGTAACATGTTTATTTCAGAAAAAAAATATTAACTTACCATGGATAGGA
>chr4A_1753
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------------------------------------------------------------------------------GT
TACAGTACACTACTCCTTATCCATTGC-TTCCACCTCATTCTTCTTAGGCCAACTCCACCGCGCGACCCCAAACGAACGT
CCGTTTTGTCCTGTTTTTGTCCCTTTGGGTAGGGATTTGGGGTCGTGTCCGGGCCTGTCCTGGGATGCGGTGGCCGTGCG
CCCAGCGCGCGGCCGCATCCTTTTGCCTCATCCTGTCCGTCAGGGCCAAGAAATGCCCAAATTTGCATTAAAACTACTTT
CAAACCCAAATATTTGTCTGAAAATTAAAATAGTTTTACAACCCAATTGAAATTGTCTTTAATAAAATAGTTTTACAACC
AAATCGAAATTATCTTGACTGAACATAAAATGGAGAAATACATCTATTGGTTACCAATATGATCCCACACGTGCTCAACC
AAGTCATTTTGAAGATTCACATGAGTGTGCCAATCACGCATCTCACGGTGGAATTGGGCAAACTGTTCAATTGTGGCCGG
GTCTTGGTGCAGGGGCTCAATATTTTTCACCTTGGTAATCAAATCCTTCGTCAAAGATACTCTCATCCCGCTCGTCCTCG
ACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCCTTCATCCCATCACAGTGCAGGGTTTCG
AACGATACCCCACCGGGATTGAAGCACACCAAAAGCGCGTTCCACATCCTTTCTAACACTCTCTTGCATTTGGGCAAATC
TCTTTCTCTTCTCACCTTGGGGTTTCGAGATTGTCTTCACAAAAGTTGACCACTGAGGATATATACCATCTGCTAAATAG
TATCCCTTGTTGTAATGGTGGCCGTTGATCTCAAAGTTGACAGGTGGGGAGTGGCCTTCTGCAAGCCTCGCGAAGACTGG
AGAACGCTGCAGCACGTTGATATCATTGTGAGAACCTGCCATGCCGAAGAAAGAATGCCATATCCAAAGATCGTGTGATG
CCACCGCTTCTAATATGACAGTGCACCCGTTAACATGCCCCTTGTACTGGCCCTGCCAAGCAAATGGACAGTTCTTCCAC
TCCCAGTGCATACAATCTATGCTGCCAAGCATACCTGGAAATCCTCTAGCTGCGTTGGTCGCCAACAATCTCTCTGTATC
AGCGGCAGTTGGCTGCCTCAAGTACTCTGGCCCAAAGACCTCGATCACAGCCTGGCAAAACTTGTACATTGACATCAGAC
ATGTTGTCTCACTCATACGCACATACTCATCCACCAGATCGCCTGGAATTCCATATGCAAGCATGCGGATGGCCGCGGTG
CATTTCTGATAGGAGGAGAATCCAAGCTTGCCAAGGGCATCCGTCTTGCACTCGAAGTATGGGTCATGAGCAACCACTCC
CTCTCGGATACGATTGAACACATGCCTTGCCATACGAAAATGGCGACGAAATTTATCCGGCCTAAAGAGCGGGGTGTTGG
CAAAGTAATCTGCATAGAGCAGGGCGTGGCCTCTCTCCCTGTTGCGGTTTAGGTTGGGAGCACGGCCAGGGACTGACCCC
CTGTACCGAGGAAGCTGCCGTTGAATATGGTCGTGAACGACCAGTGCAGCCACCACAAGATCGTCATCATCCGACGACGA
ATCGTCCGATGAACAAAGGAAGTGATGGAAGAAAAACTCGTCTCCACTGTCCATACCTTTGTTGGCAAAAGGTCGAACAC
CTTGCGGTCGTGGTGGCGAAGAGGCCGCGATGATCACCTCGACGCAGCAGGGTGGTCGCTGGCTGGCTACAGGCCGCTCT
GGAGCTCTCGTCGGAATCTGCCTCGGCCGCCGTGGTACGTCACCGGCAGTCGTGTCTGACTCTACCACCGGCAAGGACGG
CCACGGCCAAACCTCCTCCGATCGACGACCAAAACTACGGCGGAAGCGCGGGCGTGGTGGTGGCCATGTCGAGACGTGGT
TTGGTATGGACGGCGGGGGGGCTGCGCGGTGAGGAGGCGGCCGGAGAATAGCGGCGGCGGGGCGGGCGGGGCGGGGAGAG
AGGGTGAAGCGTTGGGAGCGGAGGGACTGCTAGTGTCCCCGACAGGCGGGCCAGGGGAGGACAAGCGCGCGCGTCCCGCC
CGTCCGCGTGGTGTCCGTTTCACCCCAAAACCGGCGCAAGTTTGGGCCGGGAATGGGTCGAAAGCGGACACAAAGCGGAC
AAAAGTCCGTTTGCTCCCGCGCGCTGGGCCGCCTTTTTTATCCCTTTTACCCCAAACGGACGGGGCCGAACAGGATAGGG
TCGCGCGGTGGAGTTGGCCTTATATATTTGTTTCCGGGTGCTGCATTGTTCTATACATGACTCTTGTCTCATGTAAACCT
CACTAGAG--------GAGCTATATGTAACCTAAAGAACTTAAAAAGTGGTAAACTGGCAATTTG--TTGCTAAATGGGA
TAATTAGTATAAAAACGTCAAAGTCGGCGGCAAAATTTGGAAGTCCCTCCAAAAACTATAATGTATCGTGTGACCCCTAG
CAAGTGTGCTTATAGAAAAATTCTTTCATCATAATCACACACCATGGCACAAACACCAAAAGAAAAATATTGATCTTAAA
AAGCCATAGCTAGAGCCGCTACATCCATTTTGAGCGGGAAGGATCGAGGTGTCTACTAAGGATGAATACATAGTGTACTA
ATATATAAGACATCTGAAAAATGTAAATCCCACTTAAGAGTTTCTTGCCCTTGTGTCCACACATATACCATATCCACTAC
CTT--GAGTATTATCTCATGACAATCAGTTAAACTTGACCAATAGGAGAGCATCCAATATAAACATTGAGCGT-TATCAA
AACAAATCAAATGCAACAGTAACATGTTTATTTCAGAAAAAAAATATTAACTTACCATGGATAGGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------S---S------S---------------
-------------------------------------------------------------------------------S
-----------------------------------------------------------------------SS-------
-------S-----S---------S--S--------S----------S--------------------------------S
-----------S--------------------------------------------------------------------
---------------S---------S---S-------------------S-----------S-SS---------------
-----------S--------------------S-----S-----------------------------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---------------------------S------S---------------------------------------------
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----------------------------------S-----S------S-S-------S-----------SSS-SS-----
--------SSSSSSSS-------------------------S------------SSS-SS-S---SS-----------SS
-------S-------S-------S-----------SS-----S-------------------S--S----S--S------
---S-S-----------S----------------------------------SS------S-------------------
-------------------S------------S-----------------------S-----------------------
--S----------S-----------------------S-S--S--S--S---------------------S---SS----
---SS----------------------------S--------S--------S--------S---S-----S-SS------
------------------S-------------------------S-S---------S---------
>forward_619
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---------------------------------------ATGAGACAGAAATGCCCCCG---------------------
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>reverse_1523
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--TGCGTGCAGTGGATTCATCT----------------------------------------------------------
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