>input_sequence_81996
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----------------------------------------------------------------------ATGGACGCGC
CGAGCGGCAACGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGTCGGCGTC
GAAGACGTATCCGACACCGAGGTCGAGGAGTTCTACGCCATACTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTC
GGGCGGGGTCGCCGCCGCCAGGGCCAGCGCCCCGGCTCCGGC------CCCGCGCGCGCCGGCATGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC---------------GCAGC------------AG
CCCGCCGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGCC
GGAGCCGGAGGTCACCCCCTC--GTAG-----------------------------------------------------
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>chr3B_1_TraesCS3B01G041200
GAGGCGCTCTACATGCTAGGGGTAAACCCTAGCCAGCACAGCCTCGTCCAAGCCGCCGTCGCCGCGGCCAGCACCGGCTC
GTCGGCGCTTCCTCGGATGGTGCTGCCCGAGTCACCCCGCGCGTCGGCTTGCAACCTGGTCCCCGGCTTCCACGTCTACC
CGCAGGCCTCCCGCCTCTTCGGGGAATGCTCACCCGACGTGAGCGTGGCCGCGCTTTCCACGCCCGCGCCAGCGCCCATC
GACCTCAACGCCATCACAGTGGTTGGTGGCTCGTCGTCCGGCGGCACGAGGAAACGCGCCCGGCAGACGCCGGCCGGCGG
GCTCCCAGACATCCGTAACCTGTTCGAGGGAATGACGTCCGCCGTCGACGAGGACTTCATGCAAAACCTCATCTTCGAGG
GCGGTGCGCCGGGCGCTGGCTATGATCCCGGGCGTGGTCGAACTCAAGTCACACCCTTTTTTGCGTGCTGGCATGTGTGC
TGGCCGGCTGGCAAGTGCGTCAGCATGAACTGTGGTGATTTTTTCTGAAACCGGCATTATATGCTGGCGCTGGCTGGTGC
CGGCATGAGACATGGCCGCTGGCATGATCGACCACGGTCCCTTTTTATTTAAAAATTGAATGAGGGCATGAAATGGGTCG
ACGCGTTGGGCGCACTGCCGACCCAAATATAAAACTGGGCGGACGCCGGACGGATGGCCGACCCAAACAGACAAAAGGCG
GACAAATGCGCCGTCTGTTTGGGTGGAGTTGCTTTTACTTGTAGCTGGTGGAGTTAGTCGCCGTCCCGTCTTAAACAAAA
GAAAAAGAACCTTTTTTTA----TCTCTCT---TTGTTTTCCAACCGGCGGCCATTCTTTTTGGATCATATAATAAGCGT
AGGCTTTCGGGTGTTCTTTTCCTCCGAGGCAGTCGCTCGTCCTGAGTACAGACTCCAGACACAAACGCACCCATACATCA
CACATCAAGCAAGCTCGTCCAGAGTCCAGAGT-----------------------CGCGCGCTGGTGACCATGGACGCGC
CGAGCGGCAACGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGTCGGCGTC
GAAGACGTATCCGACACCGAGGTCGAGGAGTTCTACGCCATACTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTC
GGGCGGGGTCGCCGCCGCCAGGGCCAGCGCCCCGGCTCCGGC------CCCGCGCGCGCCGGCATGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC---------------GCAGC------------AG
CCCGCCGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGCC
GGAGCCGGAGGTCACCCCCTC--GTAGAG-------GCACGAGGACGACGAC-------------------CCC----TC
GGA----------CGGACGGACGGACGGACATGGGGGAGCTGGCCGGCGACGATACTCTCC-----TCTCCCCTGTACCA
CCCACCGCCCG-------GCCGGTGCTTTTTTAGCAAACTGATCATCTTCATCTGTTATT--TTACCTTACCACTTACCA
GTGGTAATTCGGTATGTTTAAACGATCATTACTATACTACGGAGTACGTAGTACTGTAGTTGTACGAGTACTTACTTTCT
GAG-CGCGTACGTTTGTACGTGATGCCTCCCGCTGTCATGCTTGTGTGAACAAGGAAGACCTGTCACAAGAGTCCACTGA
GACTACTGTACTCTACCAA----CATTGCTTCATTATTAGTGCATGCTTAACTTCCAAGGTTTCCTAACCTACAACTTTG
ACCACAGCTCTGCTACTGCCAAGGCCCCGTTCGGAACAAAGTAAGGACATAGGAATTTTGGAGGATAGGATTCATGTAGA
GGATTTTCGTCAAAAGAAAAATGTAGAGAATTTTCCTTACATGAATGGAATAGAGACACGGCAAAACGCAACAACGCTAT
GCTGCAAAGATTATTTCGGGAATGGAAGCTTGAATAACCAGGAAGGGTAGACCATATGATCAGGTGCTGGAAACTGAACC
CTGCGTAAATCATAGAAGACACAATGAGCACATACAAGTACAAATTAAAAGTTGAAAACATGAGAAGGTACGATTGAATA
GCGGGCGCAACTAAAGTGTGGCAAATGTTGCATAAGAAATTGTTTTGGAAGATTAGACAAACATACAACTTGATATTGCT
AGGCTCGTACTTGAAGGATGAGGTATTGAATGAAGAGAAACCATTCCCCCAACCCCTCAAAAGGAACTAAATTGTGAAAA
AAATACCTCCCCTTGTTTATTTGCCCAATTTACATTTTTCACTTCATTTGGCCTAATCACATTTTCAACGGAAAAACGTA
AGCCGAATATGATGTAACATCCTAATAGACTTTTTTCATTTTCTAA
>chr3B_766
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---------------------------------------------TGGTGGAGTCAGTCGCCGTCCCGTCTTAAAAAAAA
GGCAGCG--CCTTTTTTTTCACCGCTCTCTAAATTGTTCTCCAACCGGTGGCCATTCTTTCTGGGGATCAT-ATAAGCGT
GGGCG-------GTTCTTTTCTTCCGAGACACTCACTCGTCCAGA---------CCACCCGCGACAGCGCCCACCGCTCA
CCCACCAAGCAAAGGAACACACGCGCAACGACCGCCCCC-------------GCGCGCGCGGTGGTGACCATGGACGCGC
CGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC------------CC---GCC---------CCGGCCCCCGTCGGCGTC
GACGACGTGTCGGACGCCGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGATGCCTCGCGCCGGCTCGTCTC
GGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGC------CCCGCGCGCGCCCGCCTGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGCGCCGCCCGCCCCGCCGCCGCCTCCTCCCTC---------------GCAGCAGCAGCAGCGGGAG
CCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCGGCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGCC
GGAGCCCGAGGTGCAAGCCTAGAGTAGAGCCGCACGGAT----GACGAGGACGACCCCTGGCCTCGGCGCGCCC----CC
GCAGCTCGGCGTGCGCACGGACGGACGGACGCGCGCGCGCTGGCCGGCGGCGACACTCTCCATGCTCCTCTGTACCACCG
CCCGCCGCCCG---GCCGGCGC--------TTAGCAAACTGATCACCGTCATCATTTGTTAGTTAC-------CTTACCA
GTGGTAATTCGGTATGTTTAAACCAACATTA-------------------------------------------------
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>chr3A_766
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---------------------------------------------TGGTGGAGTCGGTCGCCGTCCCGTCTTGAAAAAAA
GGCAGCG--CCTTTTTCTA----GCTCTCTCAATGGTTTTCCGGCCGGTGGCCATTCTTTCTGGGGATCAT-ATAAGCGT
CGGCTTCCGGGGCTTCTTTTCTTCCGAGGCA----CTCGTCCAGA---------CCAGCCGCGGAAGCACCCACCGCTCA
CCCACCAAGCAAAGAAACACACGCGCAAGCGCGCAACGACTGCCTGCCCCGGGCGCTCGCGGTGGTGACCATGGACGCGC
CGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC------------CC---GCCGCCGCCGCGCCGGCCCCCGTCAGCGTG
GACGACGTATCCGACGCAGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGCTCGTCTC
CGGTGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGC------CCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGCGCCGCCCGCCCCGACACCGCCGCCTGCTCCTTCGCAGCAGGAGCAGCTGC------------TG
CCCGCCGACGAGCGCGTGGCCGAGAACGCGTCCCCGCCGCGGCGGCCCGTCCCCCGCGGCCTGGACCTCAACGCCGAGCC
GGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCAACCCGCACGGACGACGAGGACCCCTGGCCTGGGCGCGCCC----CC
GCA----------CGGACGGACG------CGCGCGCGCGCTGGCCGGCGGCGACACTCTCC-----CCTCTGTACCACCA
CCCGCCGCCCG---GC-GGCCGGTG-CTTTTTAGCAAACTGATCACCGTCATCATTTGTTAGTTAC-------CTTACCA
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>chr3D_993
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--------------------------------------------------------------TGGTGACCATGGACGCGC
CGAGCGGCACGGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGTCGGCGTC
GATGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATCCTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTC
GGGCGGGGTCGCCGCCGCCAGGGCCCG---C---GCCCCGGC------CCCGCGCACGCCGGCCTGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC---------------GCAGC------------AG
CCCGCCGACGAGCGCGTCGCCGAGAACGCCTCGCCGCCGCGGCGACCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGCC
GGAGCCAGAGGTCACCCCCTC--GTAGAG-------GCGCGAGGACGACGAT-------------------CCC----TG
GGA----------CGGGCGGACGGACGGACGTGGGCGAGCTGGCCGTGGACGATACTCTCC-----TCTCCTCTGTACCA
CCCACCGCCCGCCGGCCGGCCGGTGCCTTTTTAGCAAACTGATCATCTTCATCTGTTAAT--TTAC-------CTTACCA
GTGGCAATTCGGTATGTTTAAACGAACATTACTATACTG-------CGTAGTACTGTT---------------TCTTTCT
TGGCCGCGTACGTTTGTATGCGATGCCTCTCGCTGTCATGCTTGTGTGAACAAGGGAGACCTGTAACAAGAGTCCATTGA
GACTGCTGTACTCTACCAATTAACATTGCTTCATTAGTAGTGTCTGCTTAACTTCCAAGGTTTCCGAACTTACAACTTTG
ACCACAGCTCTGCTGCTGCCAAGTCCCCGTTTGGAACAAAGTGAGGACATAGG-ATTTTGGAGGATATGATTCATGTAGA
GAATTTTCCTTAA---AAAAATGTAGAGAAATTTTC--------------------------------------------
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>chr3D_993
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--------------------------------------------------------------TGGTCACCATGGACGCGC
CGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCTCCGCCGCCGCAGCC---GCC---------CCGGCCCCCGTCGGCGTC
GACGACGTATCGGACGCCGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGCTCGTCTC
CGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGC------CCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGCGCCGCCCGCCCCGACGCCGCCTCCTCCCTC---------------GCAGCAGCAACAGCGGGAG
CCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCGGCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGCC
GGAGCCGGAGGTGCAAGCCTAGAGTAGAG-------CCGCACGGACGACGAGGACCCCTGGCCCGGGCGCGCCCGCCCCC
GCAGCTCCGCGTGC--------------ACGCGCGCGCGCTGGCCGGCGGCGACACTCTC-----TCCGCTGTACCACCG
CCCACCGCCCG---GCCGGTGC--------TTAGCGAGCTGATCGCCGTCATCATTTGTTAGTTAC-------CTTACCA
GTGGTAATTCGGTATGTTTAAACCAGCACTACTA----------------------------------------------
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>chr3A_993
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--------------------------------------------------------------TGGTGACCATGGACGTGG
CGAGCGGCACGGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGTCGGCGTC
GACGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATACTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGCCTC
GGGCGGGGTCGCCGCCGCCAGGGCCCG---C---GCCCCGGCTCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCT
CCTGGGAGGACTTCGC---------CCCGACACCGCCGCCTGCCCCGC---------AGCAGCAAC------------TG
CCCGCAGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGCC
GGAGCCGGAGGTCACCCCCTC--GTAGAG-------GCGCGAGGACGACGAG-------------------CCC----TG
--------------GGACGGACGGACAGACGTGGGCGAGCTGGCCGGCGACGATACTCTCC-----TCTCCTCTGTACCA
CCCACCGCCCG---GCCGGCCGGTGCTTTTTTAGCAAACTGATCATCTTCATCTGTTAAT--TTAC-------TTTACCG
GTGGTAATTCGGTATGTTTAAACGAACGTTACTATAC-------TACGTAGCACTGTAGTTGTACGAGTACTCTCTTTCT
TGGCCGCGTACATTTGTACGTGATGCCTCTCGCTGTCTTGCTTGTGTGAACAAGGGAGACCTGTCACAAGAGTCCATTGA
GACTGCTGTATTCTAC----TAACATTGCTTCATTATTAGTGCCTGCTTGACTTCCAAGGAATTCTAACTTACAGCTTTA
ACCACAGCTCTGCTACTGCCAAGGCCACGTCTAGAACAAAGTAAAGGCATAGGAATTTTGGAGAACAGGATCCATGTAG-
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--------------------S----
-SS-SS-SS--------------S------------------------S-----------S---SSSSS--S--------
S-----S----S---------S---------S--S-------S--SSSSSSSSS----S-S-S--S-------SSSS---
-S--S-------SSSSSSS--SSSS-S--S-S-----------------------------S------------------
---------S----------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-------------------------S-----SSS--S--------------------------S----------------
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--------------------------------------S-----------------------------------------
------------------------------S----S-----------------------------------S--------
------------------------------------------------------------------SSSSSSS-------
-------------------------S------------SSSSSS----------------------------SS------
SS---------------------------S-------------------------S--------------------S---
----S--------------------------------------S-------------------------S----------
-------------------------------S------------------------------------------------
-S------S-S--SSS--------------S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_721
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-------------------------------------------------------------CCCAAACAGACAAAAGGCG
G-------------------------------------------------------------------------------
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>reverse_2245
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----GCGCAACTAAAGTGTGGCAA--------------------------------------------------------
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