>input_sequence_81994
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-----------------------------------------------ATGACTAGCCTCATCAGCAAAGTGTCGGGCGCC
GTGGCCGCCAGCGCGCGCAGCGTCTCGCGCGCCACACGCCGCCTCCTGCTGCGAGGACGGCGGTCCCGGCGGAGCAACGG
GCACAAGAAGGAGCGACAGGCGGCTGCTGCGGCAACGGACGCTGTGTGCGAGGACGACAGCGGAGCTCTGTGGCGCCGGG
AGATACTGATGGGGCAGCGATGCGAGCCACTCAACTTCTCGGGTGCCATCCACTACGACAGCCAGGGCCGGCCGATCTGG
CAGCCCCGCCGCAGGGCCATGGCGGCCAAGATGCTCTGCCGATCTTCGGACGTCGTGGACGACGCCGTCGTCGCGTGTCC
AACAAAGTTAACTGTACCTGGTAGTTAG----------------------------------------------------
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>chr3A_1_TraesCS3A01G216600
ATGTGGGTGATATGGACATCGAGGAACAATATCACAGATGATAAAGTAAGTATGGATTCGATTCAGTCTTTGAAGTGGAT
TAGAGAGACTTTAGCATTGTTGGAGCTTCCGGTGGAACAAACCAAGACCCTTCGTGGCTTTGGTTGGAAGCCGCCTGAGC
AGGACTGGGCGAAAATCAATACCGATGTGAGTGTCTCGTGTGTTGAAAGTAAGAGTGGAGCCGGAGGTCAAGCAAGAACA
CCTACTACATTCATTGCTGCTTGGAGTAAGCTCTATCCTAACATCATTGACCG-CTTACTGCCGATCCTACAACTCTAAC
GGATGGGGTGATTTTCGCTAAACTCCGAGATCTTTCGTGAATGGTAATGGAAAATGATTGTTTGGAGGTGGTAAACCTCT
CAAACTTGTGACAATTCGCACGCTCTCTTATAGCATCTCTACTAGTAGAAAATGAAGGACTAGCCTTATCGTTTATTTCC
TTTTATACTCACCATGTAACTAGAAATGCCAACACTCCAGCCCACTTGTGTGGAAAATTTGCATGCACACT------CAC
TGATTGTTGGATGAACTCCCCCTAGTTTCTTCATGTCTCATGTTATGGCTGATCGCGCTGGGACCGACATTGGTTGAATA
AAGTCCTAAGTTTCCGGGGGAGGGGGGAAACTATATTGCGTTCTTTTCTCAATAAAAAAATAAATTAGATTGTGTCATGC
AGAAACCCACGCCAAAGATTTTCCATGGAGCTGATACTATATCTTTAGCAAACCTTCAATTTTATTTTGTTAAACTAGAA
TTAAATAGTGACAATTTATAGCACCATAAAAAACTTATACGGGATTTCCAATTTATAGCGCATCCATTACTGGGAAAGAT
TTAGTTGTATTCCATCTATAATTGAGTACTCCGTGTATAAATATGAAGTCCAAGAACAGTGTTTTCTTGCACTCTCCATT
GCACAACCTACATACCCTGACTGAATCACGGAAGTCGGCCACCATCCATGACTAGCCTCATCAGCAAAGTGTCGGGCGCC
GTGGCCGCCAGCGCGCGCAGCGTCTCGCGCGCCACACGCCGCCTCCTGCTGCGAGGACGGCGGTCCCGGCGGAGCAACGG
GCACAAGAAGGAGCGACAGGCGGCTGCTGCGGCAACGGACGCTGTGTGCGAGGACGACAGCGGAGCTCTGTGGCGCCGGG
AGATACTGATGGGGCAGCGATGCGAGCCACTCAACTTCTCGGGTGCCATCCACTACGACAGCCAGGGCCGGCCGATCTGG
CAGCCCCGCCGCAGGGCCATGGCGGCCAAGATGCTCTGCCGATCTTCGGACGTCGTGGACGACGCCGTCGTCGCGTGTCC
AACAAAGTTAACTGTACCTGGTAGTTAGTTAATGCGTGTGATCCCATCATATATACTCGTCCGGTGTGGTGACTAGGGAT
ATGAAAATGGCTGTCTGGTGAAAGTAGGAAAAAAGATCTGATATCAGGAGAAAATGCCAATGTTATTATCTAGTATATTT
ATAGCAATATAAAAAGACCCAAATAGTGTGGCACATGAGCTAGCTAAATTTAGTTTTCTTAATAATTCTTCTCGTAGATG
GGACGACGATCCTCTAGCTTTTTATTTGCCAGTCTTGTGGACGATGTAATTG---------TTGTTAAATTATCATTAAA
GCTAGCCATGTCATTCCCTAAAAAAATATAAAAAAGATCCAAAGAAGTAAATCCAAGTAATCCCGGCCATCAAATCACGT
TC-TCCAACGAGCTAGATTGTTTCAATGGTGAGCGCTCAACATGTTTTCACGCAATCAATATCATACCAAAGTATTAGCG
ATAGCACTAACCATATAATTAATGTGTAATTAATATCACACCTTTCCTAAACAAAATCCTGCCGAATGTCAGCATGCAAT
TAGTATGCATTGCACGTATGCGATGAAT-CTTTCCTACACCCTACACTTCTTGATCCCTACCTACTCAGCCATGCTGCTG
CTAGATCTAGGTTTGCCCTTCACAATTCACACTAGCGAAGGTGTCGCAAGATGAAATTTGTATTTTTGTTTTCTCGTGAA
ACAACTATGAGTGGGTTATTTCTTAAATAAAACTATCAATGGTTTATTTGTCCCTAATAAAAACAAAATTAACGTATAAC
ACAGAAAAAGAGGGTAATGTTATTCGGTCTGTTCCAAGCCCGGACTCATCCGGATCTTCTCCCACCGCCCTCCTCCAATG
GCTCTTCTGATGATGACTCCCTTGTGGGTATTGAGCATCTTGCTCCTGATTCTTCCCAATAATTTTCAGATCTTCATCTT
TTCGTTCTTTCCTCATCTCCATCCTCTAAATCTGCTACTAGCCTTTCACAAATCCACTTCTTTTCATCCTCCTGCACTG
>chr3D_1
ATGTGGGCGATATGGACGTTGAGGAACAATATCACAGATGATAAAGTAAGTATGGATACGGTTCAGTCTTTGAAGTGTAT
TAGAGAGACTTTAGCATTGTTGGAGCTTCCGGTGGGATAAACCAAGACCCTTCCTGGCTTTGGTTGGAGGCCGCCCGAGC
AGGACCGGGTGAAAATCAATACCGATGCGAGTGTCTGATGTGTTGAAAGCAAGAGTGGAGCCGGTGGTCAAGCAAGAACA
CCTACTACATTCATTACTGTCTGGAGTAAGCCCTATCCTAACATCATTGACCG-CTTACTGCCGATGCTACAACTCCAAG
GGATGGGGTGATTTTCGCTAAACTCCGAGGTCTTTCACGAGTGGTAATGGAATATGATTGTTTGGAAGTGGTGAATCTAT
GAAACTCGCAATAATTCTCGCACTCTCTTATCACGCCT------------------------------------------
--------------TGTAACTAGAAATGCCAACACTCCCGCCCACCTGTGTGCAAAATTTGCATGCACACTAAAGGTCAC
TGGTTGTTTGATGAACTCCCCCTAGTTTCTTCGTGGCCCGTGTTATGGCTGATCGCGCGGGGGCCAACATTGGTTG-ATA
AAGTCCTAAGTTTCCCGGAAAAA----AAACTATATTGCGTTCTTTTCTCAATAAATAAATAAATAAGATTGCGTCATGC
AGAAACCCACGCCAAAGATTTTCCATGGAGCTGATACTATATCTTTAGCAAACCTTCAAACCTATCTTGTTAAACTAGCA
TTAAATAGTGACAATTTATAGCACCATAAAAAACTTATACGGGATTTCCAATTTATAGCGTATCCATTACTGGGAAAGAT
TTAGTTGTATTCCATCTATAATTGACTACTCCGTCTATAAATATGAAGTCCAAGAACAGTGTTTTCTTGCACTCTCCATT
GCGCAACCTTCATACCCTGACTGAATCACGGAAGTCGGCCACCATCCATGACTAGCCTCATCAGCAAAGTGTCGGGCGCC
GTGGCCGCCAGCGCGCGCAGCGTCTCGCGCGCCACACGCCGCCTCCTGCTGCGAGGACGGCGGTCCCGGCGGAGAAACGG
GCACAAGAAGGAGCGATATGCTGCTGCTGCGGCAACGGACGCTGTGTGCGAGGACGACAGCGGAGCTCTGTGGCGCCGGG
AGATACTGATGGGGCAGCGGTGCGAACCACTCAACTTCTCCGGTGCCATCCACTACGACAGCCAGGGCCGGCCGATCTGG
CAGCCCCGCCGCAGGGCCATGGCGGCCAAGATGCTCTGCCGATCTTCGGACGTCGTGGACGACGCAGTCGTCGCGTGTCC
AACAAAGTGAACTGTACCTGGTAGTTAGTTAATGCGTGTGATCCCATCATATATACTCGTGAGGTGTGGTGACTAGGAAT
ATGAAAATGGCTGTCTCGTGAAAGTGTG--AAAAGTTCTGATACGAGGAGAAAATGCCAATGTTATTATT---TATATCT
ATACCAATATAAAAAGACCCAAATAATGTGGCACATGAGCTAGCTAAATTTAGTTTTCTTAGTAATTCCTTTTATAGATG
GGACGACGATCCTCTAA-TTTTTATTTGCCAGTCTCGTGGACGATGTAATTGATGTAATAGTTGTTAAACTATCAATAAA
GTTAGCCATGACATTCCCTAAAAAAATATAAAAAAGATTCAAAAGAGCAAATTCAAGTAATCTCGGCTATCAAATCACAT
GCATCCAACGAGCTAGATTGCTTCAATGATAAGCGCTCAACATGTTTTCACGCAATCAATATCATACCAAAGTATTAGCG
ATAGCACTAACCATATAATTATTATGTAATTAATAGCATACCTTTCCTAAACAAAATCCTGCCGAATATCATCATGCAAT
TAGTACGCATTGCATGTTCGCGGTGAATCCTTTCCTACACCCTACTCTTCTTGATCCCTACCTACTCAACCATGCTGCTG
CTAGATCTAGGTTTGCCCTTCACAATTCACACTAGTGAAGGTGCCGCAAGATGAAATTTGTATTTTTGTTTTCTCGTGAA
ACAACTATGAGCGGGTTATTTCTTAGA-AAAACTATCAATGGGTTATTTGTCCCTAATAAAAACAAAATTAACATATAAC
ACAGAAAAAGAGGGTAATGTTATTCAGTCTGTTCCAAGCCCGGACTCACCCGAGTCTTCTCCCACCGCCCTCCTCCAACG
GCTCTTCTGATGATGACTCCCTTGTGGGCATTGAGCATTTTGTTCCCGATTCTTCCCAATAATTTTCAGATCTTAGTCTT
TTCGTTCTTTCCTCATCTCCATCCTATAAATCTGCTACTAGCCTTCCACAAATCCACTTCTTTTCATCCTCCTACACTG
>chr3B_1
ATGTGGGCAATATGGACGTCAAGGAACAATATCAGAGATGATAGAGTAAGTATGGATCGGGTTCAGTCTTTGAAGTGGAT
TAGAGAGACTTTAGCATTGTTGGAGCTTCCGGTGGAACAAACCAAGACCCTTCATGGCTTTGGTTGGAAGCCGCCCGAGC
AGGACTGGGTGAAATTCAATACCGATGTGAGTGTCTCATGTGTTGAAAGCAAGAGTGGAGCAGGAGGTCCAGCAAAAACA
CCTACTACATTCATTGCTGCCTGGAGTAAGCCCTATCCTAACATCATTGACCG-CTTACTGCCCATGCTACAACTCTAAG
AGATGGGGTGATTTTCGCTAAACTCCAAGGTCTTTCGCGAATGGTAATGGAAGATGATTGTTTGGAGGTGGTGAACCATT
GAAACTCACGACAATTCTCGCGCTCTCTTATAGAGCCTCTACTAGTAGAAACTGAAGAACTAGCCTTATCATTTATTTCC
TTTTGTATTCATCATGTAACTAGAAATGCCAAAACTCCAGCCCACCTGTGTGCAAAATT---------------------
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>chr1A_1
ATGTGGGCAATATGGTCTTCGAGGAATAATATTACAAATGATAGGGTAGGCCTAAACCCGGTTCAGTCTCTGAGACGTAT
CATAGAGACTTTAGCATGGCTGGAGCTCCCGTTGGAACAAACCAGGATACTTCCTGATTATGGTTGGCGGCCTCCTGAGC
ATGACCGTGTTAAAATTAATATGGATGCGAGTGTCACAAGCATTGAAAACAAGAGTGGAGCAGGAGGATTGGCAATAACT
CCTACTACATTCATCGCTGCCTGGAGCAAGCCGAT-------ATCATTGACCCACTTATTGCATAAGCTTTAGCTATGAG
AGATGGGGTGACCTTTGCGAAGCTCCATGGTCTTTAGCGAGTGGTTATGGAAGTTGACTGCTTAAAGGTGATAAATCTCT
AGGACTCGCGACATTTCTCGCGCTCTC----AGCACCTTTACTTGTAGAAATTGAAGGACTAGCCTCATCGTTTCTTTCT
TTTGTTACTCAACATGTATCGAGAAATCCCAATAATATGGTGCACTTGTGTGCAAAATATGCATGCACACTTGAGGTGAC
TGATTCTTGGATGGACTCCCCCTAGTTTCCTCGTGGCCAGCATTATGGTTGATCACGCTGGAGCTGACATTGGTTGAATA
AAGTCCTAAGTTTCC-----------------------------------------------------------------
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>chr3B_661
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---------------------------AAACTATATTGCAGTCTTTTCTCAAAAAAAAAATA-------TTGCGTCATGC
AGAAACCCACGCCAAAGATTTTCCATGGAGCTGATACTATA-CTTTAGCAAACCTTCAATTCTATCTTGTTAAACTAACA
TTAAATATTGACAATTTATAGCACCATAAAAAACTTATACGGGATTTCCAATTTATAGCGCATCCATTACTGGGAAAGAT
TTAGTTGTATTCCATCTATAATTGATTACTCCGTCTATAAATATGAAGTCCAAGAACAGTGTTTTCTTGCACTCTCCATT
GCGCAACCTTCATACCCTGACTGAATCACGGTAGTCGGCCACCATCCATGACTAGCCTCATCAGCAAAGTGTCGGGCGCC
GTGGCCGCCAGCGCGTGCAGCGTCTCGCGCGCCACACGCCGCCTCCTGCTGCGAGGACGGCGGTCCCGGCGGAGCAACGG
GCACAAGAAGGAGCGACAGGCGGCTGGTGCGGCAACGGACGCTGTGTGCGAGGACGACAGCGGAGCTCTGTGGCGCCGGG
AGATACTGATGGGGCAGCGGTGCGAGCCACTCAACTTCTCGGGTGCCATCCACTACGACAGCCAGGGCCGGCCGATCTGG
CAGCCCCGCCGCAGGGACATGGCGGCCAAGATGCTCTGCCGACCTTCGAACGTCGTGGACGACGCCGTTGTCGCGTGTCC
AAGAAAGTGAACTGTACCTGGTAGTTAGTTAATGCGTGTGATCCCATCATATATACTCGTCCGGTGTAGTGACTAGGAAT
ATGAAAATGGCTGTCCAGGGAAAGTATG--AAAAATTCTGATATGAGGAAAAAATGCCAATGCTTCTA-----TATATCT
ATACCGATATAAAAAGACTCAAATAACGTGGCACATGAGCTACCTAAATTTAGTTTTCTTAATAATTTCTCTTGTAGATG
GGACGATGATG-TCTAGCTTTTTATTTGCCAGTTCTGTGGACGATTA----GATGTAATTGTTGTTAA-TTATCAATAAA
GCTAGCCATGGCATTCCTAAAAAAAGACCCAAAGGG----------GCAAATCCAAGTAATCTCGGCCATCAAATCACGT
GCATGCAACGATTTAGATTGCTTCAATGATGAACGCTTAACATGTTTCCACGCAATCAATATCATACCAAAGTATTAGCG
ATAGCACTAATCATATACTTAATGTGCAATTAATATCACACCTTTCCTAAACAAAATCCTACCGAATATCATCATGCATT
TAGTATGCATTGCGCGTACGCGATGAATCCTTTCCTACACCCTACTCTTCTTGACCCCTGCCTACTTACCCATGCTGCTG
CTAGATCTAGGTTTGCCCTTCACAATTCACACTAGCGGAGGTGCCGCAGGA-----------------------------
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>SNPs
-------S---------S---------------------------------------S--S-------------------
-----------------------------------------------------S--------------------------
---------S---------------------------S-----------S------------------------------
--------------------S----------S----------------------------------S------------S
-----------------------------S-------S--------------S---------------------------
S-----S-S--------S-S---------------S---------------S----------------------------
----S------S----------------------------------------S---------------------------
--------------------------------S--S-S-S----------------------S-----------------
---------------S--SS-SSSSSS--------------------------------------S------S-------
-------------------------------------------------------------S---S------------S-
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-------------------------S--------S---------------------------------------------
--S------S----------------------------------------------------------------------
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-------------------S------------------------------------------------------------
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--------S--------------------------------------------------------------------S--
----------------S---------S-SS-----S--------S------------------------SSSS-----S-
---S---------------------S------------------------------------------S---S-------
---------------------------------------------------------------------------S----
----------S---------------------------S----SS--S--------------S-----------------
S-------------------S-------S---------------------------------------------------
-------------------------------------------------------------------S---S--------
------------------S--------------------------S----------------------S-----------
-------------------------------------------S------------------------------------
-----------S-------------S-S--------------S------------------------------S------
-------------------------S----------------------S---SS------------------------S-
----------------------------S---------S---S---S---------------------------SS----
-------------------------S-------------------S---------------------------S-----
>forward_307
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-----------------------------------------------TTGACCGCTTACTGCCGATC-------------
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>reverse_1743
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--------------------------------------------------------------CCGGCCATCAAATCACGT
TC------------------------------------------------------------------------------
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