>input_sequence_81983
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ATGGACGGGAAGAACTTGGGCAGTGGGCAACTAGCTCAACAAACTAAGCCAGATGCCTTGACAGACGATCAAGGG---GC
CCTGAAGCACACTGCAGATTCTCACACCAGAAATCCGACTTCAGTGAATGGTCACAATTCTGTAGATATGAACATGGAA-
---GCTGCGATCTCAGCCGATGATGTCATGCGAGCCGGCGGCTTCGGCGCCAAAGACGACATCGGCAGCCTCCTGCCAAC
AGCGATGGACTCCACCGACTTCGAGGCCTCGCTGCGGGACGCCCGCGACTATGAAGGCGAGAAGGAGAAGCCATCGCGGC
CCGGGCTGGGTTACAGGGCATCCGAAGCTGACACCGCAAGCAAGCTGTCGGACACGCCACCGCAGTGA------------
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>chr1B_1_TraesCS1B01G324500
GAAATAAACAAAAGCCTAACGAACGTCCATTC-GGCCCAAAAGGGAAAACCGCAGTGCCACGTTACCCCTTCTTTCGCTG
AACACGCGGTGATCCAACCCAAGTCAGGAGAGCACTGGAACAGAAGTGAACTG-----GCGAAGTGAAGAGGGGATTGGA
TTGCCTCGGTAAAAAGAAA----------GGATTTCCTTGGCTGTGTGGAAGGA----------GCGAGCTCTCGAATCT
GCGGCGCCTCGTTTCTTCGCCGACTCGATCTGCAGCCGGTGAGTGCGACGTCGCCTTGCAGCTGGTTAATCTCTTCCGCT
CTG--TTCTTGATCTGTTACT-CCCCGTCTCATCTTCTGGTTCTT--------TGTAGCTT--------CGTATGGATCG
ATCCGCACGAGTAGCGTTCATA--------TAAAGTTAGGAATCTGTTTCCGCAGTCTGTGTGGTTTGGTTTGTAGTTGC
TCCGGGGAATCGATCGAGCAAGGGAAAGTAGGAGGCGCAGGTCGCTGGAG---CAGCTGATTTGTGCTCTGTTCTGAGAT
TAAGAAAAGGGGGTTCAAATTAATCTTGGCGCTAGTAGAAGTAGCAAGTTCTGCTGAAAGTTTTGAT-GGAAA-ATTTAT
GAGGTGAGATCTGTAGCATCGTGATGTTTGATAGTTTCTGTACACAAGCGCGCGAGCAAAGAAGAGACCACTGCGTTTCT
GACTGAACCGAGCA--------------TTGTTCCTTTGGAATTTCTGTCGCTGCAACTGCAAGGCACGGCTGGAGTAA-
-------TTA--------ACATTGATACTTTGTG-------CCATGGATGGGTGTCATAATCATTGTGCCATGAACTCTG
CAGTAGCTTTGCCTGCAGTTTCCTTTGTTGCATATAATCAGGAATATAGGTAACTTGCCAAGGAGGAGGGTACTTTATCT
GCATCTTGTCAAATACTACTTCTGAAGTTCTGATTAG-----ATATCGTAAAG----------------CAGGAAATCAT
TTAAGCACGATGTTACTGTGTATAATGTGGTGCCTTGGCATGGAGTTTTCAT----ATCTAGTGGCATATCATTGCAGGC
ATGGACGGGAAGAACTTGGGCAGTGGGCAACTAGCTCAACAAACTAAGCCAGATGCCTTGACAGACGATCAAGGG---GC
CCTGAAGCACACTGCAGATTCTCACACCAGAAATCCGACTTCAGTGAATGGTCACAATTCTGTAGATATGAACATGGAA-
---GCTGCGATCTCAGCCGATGATGTCATGCGAGCCGGCGGCTTCGGCGCCAAAGACGACATCGGCAGCCTCCTGCCAAC
AGCGATGGACTCCACCGACTTCGAGGCCTCGCTGCGGGACGCCCGCGACTATGAAGGCGAGAAGGAGAAGCCATCGCGGC
CCGGGCTGGGTTACAGGGCATCCGAAGCTGACACCGCAAGCAAGCTGTCGGACACGCCACCGCAGTGATCCTGCTTTCTT
GTGCAACTTCTGTTTCAGAAAGACAAAGCACGCCATCCATGTTTC-TGTAGTTTTCCAGCATCTGTTGTGCTTCAGTT--
--GGTAGCCCTGACATCTTGTTGTTTTGGTGCTGGATGAATATGAGTTTATGAACACACGAGTTATGCGAAAGTTTGGTT
TTATTTGGTGTTGTGTTGCCCCTGATGGTTACAGTTTA---TATTGTTATCCCTTTGGTCAGAACTCAACCTTTT-GTTT
TGAAAAACAGGG----GATTCTCCAGCCTAGACAAATAAGC---------------------------------------
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----------AAGTTTTTAGTGTTTACCTTATAAGCTCACTGGAACTATGTAGAGGTGCAAATGAGTGATTCCAAATTGT
ATTTATGGGCCATGTGTTATTGATTTCATTATCTCACCAGCCATCTGTCCACTT----ATTTAAGTCCATGAGTACAATT
GCTATAAGAGCTACCACTTCCAGCGATATATTTTGTTTAGATGTCTAGCATGGTGCTAC--GTAATCAAGGTGTAGTTAT
GA---ACTTTAATGTAAAGATCCTGCACATGAT-AACAATGAC---TGATATTTTTGTGTAGTTGAAAACTATTTTTTTG
TGATATCACTATTTACAACTATGAAAACCCATCAGATGCGCTCATAAACGGTTGTGATATGTTTATAT-TAGTTATGGTC
ATTTGTCAGCTACCTAACAATTATACGAATTTACTTGCTTGTACATGCAAATTTATTGATTGTGGTCTAGTACGAAAAGA
TGTCCATCATAT--TGATGGGGTGTTATAATCGTAGTATGAACTTGCAATAGCTTTTCTTGCACTTTCCCTTGTTGTAAG
TGGTCCCAAACTAATGCTCTATTTTCTTGGAAAAGGAGGATGACTGCTCTATTTGCAATAAAAGAGAGTCAGATTAATCT
CCGTGCTGGCAGAAGTAGGGAGTTTTGGTGAAAGATGCAACTGAAAAATTATAAGGCTCGATTCCTAGCAATTTCATATT
TATCCACACACAGGCGCACGATTTCT
>chr1A_1
GAAATAAACAAAAGCCTAACTAACTAGCCCATGGGCCCAAAAGGGGCAAGCACAGTGCCACGTTACCCCTGCTTTCGCTG
AACACGTGGTGATCCAACCCAC-----GAGAGCACTAGACGAGGAGTGAACTGGCCGAGCGAAGCGAAGAGGGGATTGGA
TTGCCTCGGTAAAAAGAAAGGATTTCCTTG----------GCTGCGTGGAAGGAGCGAGAAGAGGCGAGCTCTCGAATCT
GCGGCGCCTCGTTTCTTCGCCGACTCGATCTGCCGGCGGTGAGTTAGGTTCCTTCCGCTCT-----------------CT
CTC--TGCTTGATCTGTTTACCCCCCGTCTGGTCTTCTGGTT----------------CTTTGTAGCGTCGTGTGGATAA
ATCCATATGAGTAGCGTTCATG--------TAAAATTAGGAGTGTATTTCTGCAGTCAGTGTGATTTGGTTTGTAGTTGC
TCCGGGGAATTGATCGAGCAAGGGAAAGTAGGAGGCGCAGGTCGCTGGAG---CAGTTGATTTGTGCTCTGTTTTTAGAT
GAAGAAAAGGGAG-TCAAATTAATCTTGGCGCTAGTATAAGTAGCAAGTTTTGGTGAAAGATTTAATGGG--AAAATTAT
AAGCTGAGATCTGTAGCATCGTGATGTTTGATAGTTTCTGTGCACAAGCGCGCGAGCAAAGAAGAGATCACTGCGTTTCT
GACTGAACCGAGCA--------------GTGTCGCTTTGGAACTTCTGTGGCTGCAACTGTAAGGCACAGCTAGAGTAA-
-------TTAGCAATTTAACACTGATGCTTTGTG-------CCATGGATGGGTGTCATAATCATTGTGCCATGAACTCTG
CAGTAGCTTTGCCTGCAGTTTCCTTTGTTGCGTATAATCAGGAATATAGATAGCTTGCCAAGGAGGAGGGTACTTTATCT
GCATCTTGTCAAATACTACTTCTGAAGTTCTGATTAA-----ATA---------------------------GAAAGCAT
TTTAGCATGATGCTACTGTGTATAATGTGGTGTCTTGGCATCGAGTTTTCAT----ATCTAGTGGCATATCGTTGCAGGC
ATGGATGGGAAGAACTTGGGCAGTGGGCAACTAGCTCAGCAAGCTAAGCCAGATGCCTTGACAGACGATCAGGGGGCAGC
CCTGAAGCACACTGCAGATTCTCACACCGGAAATCCAACTTCAGTGAATGGTCACAATTCTGTAGATATGAACATGGAA-
---GCTGCGATCTCAGCCGATGATGTCATGCGAGCCGGTGGCTTTGGCGCCAAAGACGACATCGGCAGCCTCCTACCGAC
GGCGATGGACTCCACCGACTTTGAGGCCTCGCTGCGGGATGCCCGCGACTTTGAAGGCGAGCAGGAGCAACCGGCGCGCC
CTGGGCTGGGTTACAGGGCATCGGAAGCTGACACGGGAATCAAGCCGTCGGAGGCGCCACCGCAGTGATCCTGCTTTCTT
GTGCAACTTCTGTTTCAGAAAGACAAAGCACGCCATCCATGTTTC-TGTAGTTTTCCAGCTTCTGTTGTGCTTCAGTT--
--GGTAGCCCTGACATCTTGTTGTTTTGGTGCTGGATGAATATGAGCTTATGAACACACGAGTTATGCGAAAGTATGGTT
TTATTTGGTGTTGTGTTGCCCCTGATGGTTACAGTTTA---TGTTGTTATCCCTTTGGTCAGAAGTCAACTTTTTTGTTT
TCAGGAACAGGG----GATACTCCAGCCTAGACAAATAA-----------------------------------------
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>chr1D_1
GAAATAAACAAAAGCCTAACTAACTAGCCCATGGGCCCAAAAGGGGCAAGCACAGTGCCACGTTACCCCTTCTTTCGCTG
AACACGTGGTGATCCAACCCAC-----GAGAGCACTAGACTAGGAGTGACCTGGCCGAGCGAAGCGAAGAGGGGATTGGA
TTGCCTCGGTAAAAAGAAA----------G----------GCTGCGTGGAAGGAGTGGGAAGAGGCGAGCTCTCGAATCT
GCGGCGCCTCGTTTCTTCGCCGACTCGATCTGCCGGCGGTGAGTTAGGTTTCTTCCGCTCT-----------------CT
CTCTCTGCTTGATCTGTTTAGCCCCCGTCTGGTCTTCTGCTT----------------CTT--------CGTATGGATCG
ATTCGCACGAGTAGCGTTCATA--------TAAAGTTAGGAATCTGTTTCTGCAGTCAGTGTGATTTGGTTTGTGGTTGC
TCCGGGGAATCGATCGAGCAAGGAAAAGTAGGAGGCGCAGGTCGCTGGAG---CAGTTGATTTGTGCTCTGTTCTTAGAT
GAAGAAAAGGGAG-TCAAATTAATGTTGGCGCTAGTAGAAGTAGCAAGTTTTGGTGAAAGGTGTAATGGG--TACATTAT
AAGGTGAGATCTGTAGCATCGTGATGTTTGATGGTTTCTGTACAAAAGCGCGCGAGCAAAGAAGAGATCACTGCGTTTCT
GACTGAACTGAGCA--------------TATC-------------------------------------GCTGGAGTAAT
TAACATTGATAC------------------TGTG-------CCATGGATGGGTGTTATACC--TT---CCATCAACCCTG
CAGTAGCTTCTCCTGCAGTTTCCTTTGTTCCATATAATCAGGAATATGGATAACTTGCCAAGGAGGAGGGTACTTTATCT
GCATCTTGTCAAATACTACTTCTGAAGTTCTGATTAA-----ATATCGTTAA---------------AACAGGAAAGCAT
TTAAGCATGATGTTACTGTGTATAATGTGGTTTCTTGGCATGGAGTTTTCAT----ATCTAGGGCCATATCATTGCAGGC
ATGGATGGGAAGAACTTGGGCAGTGGGCAACTAGCTCAGCAAGCTAAGCCAGATGCCTTGACAGACGATCAGGGG---AC
CCTGAAGCACACTGCGGATTCTCACACCGAAAATCCGACTTCAGTGAATGGTCAGAGTTCTGTAGATATGAACATGGAA-
---GCTGCGATCTCAGCCGATGATGTCATGCGAGCCGGCGGCTTCGGCGCCAAAGACGACATCGGCAGCCTCCTACCAAC
GGCGATGGACTCCACCGACTTCGAGGCCTCGCTGCGGGACGCCCGCGACTTTGAAGGCGAGCAGGAGCAACCGGCGCGCC
CTGGGCTGGGTTACAGGGCATCGGAAGCTGACGCGGGAATCAAGCCGTCGGACACGCCACAGCAGTGATCCTGCCTCCTT
GTGCAACTAATATTTCAGAAAGACAAAGCACGCCATCCATGTTTC-TGTAGTTTTCCAGCTTCTGTTGTGCTTCAGTT--
--GGTAGCCCTGACATCTTGTTGTTTTGGTGCTGGATGAATATGAGCTTATGAACACACGAGTTATGCGAAAGTATGGTT
TTATTTGGTGTTGTGTTGCCA--GATGTTTACAGTATA---TGTTGTTATCCCTTTGGTCAGAACTCAACG-TTTTGTTT
TCAGGAACAGGG----GATTCTCCAGCCTAGACAAATAAAGAACCAGTGCAATCCTTATT--------------------
-----------------------------------------TAAATAGCTGCAAAAGCTTCATTGAAGAAAGCGAGTTGC
AAATATTTACGAGAAACCCCAAAGAAGTACC-----ACTC-------TCACAAGATCAGTGTTTGTGGGTGTTCTGTTCT
GGGCTCTGGCTAACAGCCAAGTTAGCCAGATGGGAAGTACTATTCTCATTCCGTTTCTCCCTTGA-ACGAGCACCAGGCA
CTTCTG---ATCTTCTTCACACACAGCATGCATTGCTTGACTTAAAATGAGCATAT------------------------
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-------------------GTGTCATCTCGGCTCTTCAAAGGAACAAGAAG-CGTTCCAGTAGCTTTGC-----------
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--------------------------------------------CTATGTCAGAGGAAATTTGTCAGCCGTTGAAGATAT
CGTCACTAGATCGGTTCATACACACACACTCTCAACTTGAACTCATGTTCCTGGTGCATCCCATGCCTACCATTGATCAT
AGTCCTCACATACCAAGGTAATACCACTTCTCTATGCATTTAGTGGCAGCAATAACAG-AAAAGATGGGCAACCTCACAT
TTTTGCGGTGAG-----GAGTGTTCACCTTATATGCTCACTAGAATTACGTAGAGGTGCAAATGAGTGATTCAAAATTGT
ATTTATGGGCCATGTGTTATTGATTTCACTACCTCATCAGCCATTTGTCCGCTT----ATTTAACTCCATGAGTACAGTT
GCTATAAGAGCTACCAATTCTAGCTATATATTTTACCTAGATGTCTAGCATGGTGCTATATGTAATCAAGGTGTAGTTAT
GG---ACTTTAATGTAAAGATCCTGCACAAGAT-AACAATGAC-------------------------------------
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>chr1D_170
GAAATGGA------------------------------------------------------------------------
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-------------------------------ATTCACTTGGCGGCGCGGAAGGA----------GT----TCTCGAATCT
GCCGCGCTTCGTCTGTTGTCCGACTCGATCT-CAGGCGGTGAGTA--------CCTTGCCGTTGGTTAATCTCTTCCG--
--------TTGATCCTTTACTCCCCCGTCTCGTCTTGTGGTTCTTTGCAGGCTTGTAGCGT--------CGTATGGATCG
ATCCTCACGAGTAGCCTTCATGTGTAAATGTAAAGTTAGGAGTCTA-------------------------TGTAGTTGC
TCTGGGGAATCGACCGAGCGAGGGAAAGTAGGAGGCGCATGTCGCTGGAG---CAGTTCATTTGTGCTCTGCTCTGAGAT
AAAGAAAAGGGAG-TCAAATTAATCTTGGCGCTAGTACAAGTAGCAAGTTTTGGTGAAAGGTGTAATGGG--A-AATTAT
AAGGTGAGATCTGTAGCAATCTGATGTTTGATAGTTTCTGTACACAAG--------------------------------
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------------------------------------------------------------------------CTTTATTT
GCATCTTGTCAAAGG---CTTCTGAAGTTCTCGTAAA-----AAAGAAGGCTTCTGAAGCTCTGACTAACAGCAAGGATT
TTGAGCATGAAGTTACTGTCTATAGTATGGTGCCTTGGAATGGAGTTTTTAT----ATCTAGTGGCTTATCGTTGCAGAC
GTGGACAGGAAGAACCTGGGCAGTGGGCATCAAGCTCAACAAGCTAGACCAGATGTCTTGACAGATGATCAGTGG---GG
CTTCAAATACGCTGCAGATTCTGACACCGA--------------TGAATGGTGGCAAAGCTGTAGATATGAACATGGAA-
---GCTGAGATCTCAGCCCAGGATGTCATGCGAGCCGGCGGCTTCGGTGCCAAAGACGACATCGGCAGCCTCCTACCGAC
GGCGATGGACTCCACTGACTTCGAGGCCTCGCTGTGGGACGCCCGCGACTTTGAAGGCGTGAAGGAGCAGCCATCGCGAC
CCGGGCTGTGTTACGGGGCATCTGAAGCTGACGCCACAAGCAAGCCGTGCGACGCGCTACGGCAGTGAACCCGCTTTCTT
GTGCAATTTCTGCTTCATAAAGATAAAGCATGTTGTCCATGTGTTTCTCGAGTTTTCAGCTTCTAAACTCTCTGCTTCAA
TGGGTAGCATTGACATCTTGTTATTTTGGTGCTGGATGAATGCATGAGTGGCTGAA--------------------GGTT
TTCTTTGTTGTTGAATTATAGATGTATGTGACTGTTGTTGAAAATATGAGCAAATTACTACAAGATTT------------
---------------------------------------------------------------ATTCCGAATAAACAGTA
ATTAAATCATGACGACAATAACAGGGAATGAACTAATCATGCGGACTATCTGAACATATCGTATCTAAGCC---------
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---------------------------------------------------------------------------ACAGC
CTAGAAATAGGAATTTAGCATGATCTCAAACAATGAGGACGAGATCACATACGATGCGGCGGGAGCAGAACCGTTGGCGC
TGATGTTGTCGGCCATGTCGTTGATGAAAAGATTGCC---------------GAGATTGGGGAAGAAGTCGTCGTTGCAA
GTCGTCGCTGCCAGAAGTCTTCTGGCATGCGCTCCCAAAAGCCTGTTGTCCCTTCTCGCGGTGCATGCCAGAGAGGGATG
AAGAAGACTTGCGTG-----------------------GCAGTGCAATGTTCTGGAATGGTGTGAAACCATATGTTGTGG
CGGCGGCTAGGTTAGACGTCTGCCTATCTATATAGTGCGAGTCGGGTAGGTCGTGGGAGTAAACCCCATGTCCAAGTCAA
TAACAGTCCTATGATCCAAAGAAATCGGAAACGGCTGAATAATTAACACATCCGTTAATTAGTAACTAATGATTCACTAA
TTTTTCCGAGCAACAAAAATATAGACAACATGCATAGCTTTGTCC-----------------------------------
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----------------------TCGGCTCGGCTCATACCCGAAACCCGACG-CGACGCGGCAAGCGAGGAGGAGAAGCGC
GCGTGTAGGTCTCCTCTTCTCATGCTCATACAAGTGCTAGAAGAGCTCACCTCATAAAGTGGTGCAACTCACTCTCATCT
AGCAGTATGGGACTAAACTCTAGTCCCACTCACATCACACACAACCATGCAGGAAGAAGTTTGTCAGCCATTGAAGGTAT
CATCACTGGACTGACTCATCTACACACACTCTCAACTTGAACTCATGTTTTCGGGGCATCCCAAGCGTACCACCGATCAT
AGTCCACATAGACCAAGCTAACACCACTTCTCTATGCACCTAGTGGCATCAAAACAAA-AA-----GGGCAATTTTACAT
TTTTGCGGTGAAGTTTTGAGTGTTCACCTCATATGCTCACTAAAACTATGTAGAGGTGCAAGTGAGTGATTCCAAATTGT
ATTTATGGGCCATGTGTTATTGATTTCATTACCTCACCAACCATCTTTCCACTT----ATTTAAGTCCATGAGTACAATT
GCTATAAGAGCTACCAATCCTAGTGATATATTTTATTTACTTGTCAAGCATGGTACTAT--GTAATC-------------
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>chr1D_389
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-----------------------------------------ATCTGTTTCTGCAGCTGGGGTGGTTTGGTTTGTAGTTGC
TCTGGGGAATCGATCGAGCAAGGGAAAGTAGAAGGCGCAGGTCGCTC---------------------------------
----------GAG-TCAAATTAATCTTGGCACTTCTAGAAGTAGCAAGTTCTGCTGAAAGATGTAATGGG--AGAATTAT
AAGGTGAGATCTGTAGCATCGTGATGTTTGATAGTTTGTGTACACAAGTGGGCGAGCAAAGAAGAGACCACTGCATTTAT
GACTGAACTGAGCA--------------GTGTTGCTTTGGAATTTCTGTCGCTGCAACTGTAAGGCACAACTGGAGTAAT
TAACAATTTA--------ACATTGATACTTTGTGCCATGGCCCATGGATGGGTGTCATAATCATTGTGCCATGAACGCTG
CAGTAGCTTTCCCTGCAGTTTCCTTTGTTGCATATAATCAGGAATATAGGTAACTTGCCAAGGAGGAGGGTACTTTATCT
GCATCTTGTCAAATACTACTTCTGAAGTTCTGATTAA-----ATACCGTTAA---------------AACAGGAAAGCAT
TTAAGCATGATATTACTGTGTATAATGTGGTGTCTTGCCATGGGGTTTTCAT----ATCTAGTGGCATATCATTGCAGGC
ATGGATGGGAAGAACTTGGGCAGTGGGCAACTAGCTCAGCAAGCTAAGCCAGATGCCTTGGCGGACGATCAGGGG---GC
CCTGAAGCACACTGCAGATTCTCACACCGGAAATCCGACTTCAGTGAATGGTCACAATTCTGTAGATATGAACATGGAA-
---GCTGCGATCTCAGCCGATGATGTCATGCGAGCCGGCGGCTTCGGCGCCAAAGACGACATCGGCAGCCTCCTACCGAC
GGCGATGGACTCCACCGACTTCGAGGCCTCGCTGCAGGACGCCCGCGACTATGAAGGCGAGAAGGAGAAGCCATCGCGGC
CCGGGCTGGGTTACAGGGCATCCGAAGCTGACGCCGCAAGCAAGCCATCAGACGCGCCATCGCAGTGATCCTGCTTTCTT
GTGCAACTTCTGTTTCAGAAAGACAAAG----------------------------------------------------
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>chr1D_420
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------------------------------------------------------------------------GTAGTTTC
TTTGGGGAGTCGATCACGGCAGAGTT-----GGGGTGCAGGCCGCCGCAGCAACAGCTGATTTGTGCTATGTTCTGAGAT
AAAGAAAAAGGAG-TCAATTTAATCTCGGTGCTAGTAGAAGTAGCAGGTTGTGGTGAAAGATGTAAAGG--AA-AGTTAT
AAGGTTAGATCTCTAGCAATGTCATGTTTGACCATTTTTGGACATGTC----CGAGCAAAGAAGAGAGCGCTTTGTTTCT
GACTGAACTGGGGACCCGGATGAGAAGACTGTCTTACATT---------------------ATGGGACGGAAGGAGTAGA
GTGC---TTA--------ACGGTGATACTTTGTG-------CCATGGATGGGTGTTATAATCATT---CCATGAACTCTG
CAGTAGCTTTGCCTGCACTTTCCTTTGTTTCATATAATTAGGAATCTCGATAGCTTGTCGAGGAGGAGGGTACTTTATTT
TCATCTTGTAT---------------------ACTAATATAAATACACTTAA---------------AAAGGTAAAGAAT
TGGACCATGATAGTACCATGCATAGTGTGGCGTCTTGGCATGGAGGTTTCATTCAAATCTAGCAGCGTATCATTGCAGGC
ATGGATGGGAAGAACTTGCACAGTGGGCAACTAGCTCAACAAGCTAAGCTAGAAGCCT-GATAGATGATC-AGGG---GG
CCTGAAGCACACTACAGATTCTGACACCGAAAATCCGACTTTGGTGAGTGGTCAGACAACTATAGATATGAGCATGCATG
GAAGCTGCCAGCTCCTCTG-TGATTTTATGCTAGCCGACGGTTTTGGCGCCAAAGACAACATCGGCAGCCTCCT------
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>chr1D_445
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-----------------GCAAGGGAAAGTAGGAGGCGGAGGTCACTGGAG---CAGTTGATTTGTGCTCTGTTCTGAGAT
AAAGAAAAGGGAG-TGAATTTAATCTCGGCGCTAGTAGAAGTA--AAGTTGTGATGAAAGATGTAAA-GG--AAAATTAT
AAGGCTAGATCTCTAGCAATGTCATGTTTGACCATTTTTGCACACGTC----CGAGCAAAGAAGAGACCACTTTGTTTCT
GACTGAACTGGGGGCCCGGATGAGAATGTTGTTCATTTTGAATTTCGGTTGAGGCGACTAGAAGCCAATGAATGATAGTA
CTTAG--------------CGGTGATACTTTGTG-------CCATGGATGGGTGTTATTATCATT---C-ATGAACTCTG
CAGCAGCTTTGCATGCACTTTCCTTTGTTGCATATAATCAGGAATATAGATAGCTTGCCTAGGAGGAGTGTACTTTATTT
GCATCTTGTCT---------------------ACTAA-----ATACCCTTAA---------------AAAGGTAAAGAAT
TGGACCATGGTATTACCATGCATAGTGTGGTGTCTTGGCATGGAGGTTTCATTCAAATCTAGTGGTGAATCATTGCAGGC
ATGGATTTGAAGAACTTGGGTAGTGAGGAACTAGCTCAACCAGCTAAGCCAGATGCATTGACAGATGATCAGGGG---GC
CTGAAG--------------------------------------------------------------------------
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>chr1D_1003
GGG-----------------------------------------------------------------------------
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-----CGGGAAGAACTTGGGCAGTGGGCAACTAGCTCCACAAGCTAAGCCAGATGCCTTGAGAGATGATCAGGGG---GG
TCTGAAGGACGCTGCAGGTTCTGACACTGGAAATACGAGTCTAGTTAATGGTCATGATCTTGTAGATATGAGCATGGAG-
---GCTGCCATCTCCGCCGATGATGTCATGCACGCCGGCGGCTTGGGCGCCAAAGACGACATCGGCAGCCTCCTACCAAC
GGCGATGGACTCCACCGACTTCGAGGCCTCGTTGCGGGACGCCCGCGACTATGAAGGCGAGAAGGAGCAACCG--GCGCC
CTGGGCTGGGTTACAGGGCATCAGAAGCT----CGGGAATCAAGCCGTCGGACGCGCCGCAGCAGTGATCCTGCTTCCTT
GTGCAACTTCGATTTCAGAAAGACAAAGCACGCCATCCATGTTTA-TGTAGTTTTCCAGCTTCTGTTGTGCTTCAGTT--
--GGTAGCCCTGACATCTTGTTGTTTTGGTGCTGGATGAATATGAGTTTATGAACACATGAGTTATGCGAAAGTATGGTT
TTATTTGGTGTTGTGTTGCCCCTGATGGCTACAGTTTA---TGTT---ATCCCTTTGGTCATAAGTCAAATTTTTTGTTT
TCGGGAACAGGG----GATACTCCAGCCTAGACAAATAAAGAAACAGTGCAATCCTTATT--------------------
-----------------------------------------GAAATAGTGGCAAAAGCTTCATTGAAGGAGGAGAGTTGC
AAATATTTTTGAGAGACCACGAAGTAGTACTGCTCTACTC-------TCACAAGATCAGTGTTCTTGGGTGTTCTGCTCT
TGGCTCTGGCTGACACCCAAGTTAGGAAGCTGGGAATTACTGTTCTCATTCCATTTCTCCCTTGAGACGAGCACCAGGCA
CTCATA---ATCTTCTTCGCACAGAGGCTGCATTACTCGACAGCCATTGTTTTCTTCTAGAATACGCA------------
--------------------------------------------------------------------------------
------------------------------------------------CAAGCATGCGTATCAGATATTCATAGAGAAAA
GGGGAGACCCCCTCCACAGTTTTATAGACGCGGCCCAAGACCTAATAAATAGGTCTACTCCTCGCTACTCACTGGACAGC
CTAGCAAAAAACGTACTACACTCGTAGCGTAGAAGTCCGGCCATACACCAGGCCTTCTCCTCCTCCACAATCCTACGCAG
TAATCTACTCTCCAACAAATCACACCGTCGAAGGCGATAGAATTCCTGTTCTTTCAAGTCTCCCACATGACCAGGAGTGC
AGTTCCTTGCTACTCCGCTCGTCCTGGGGTAGTGCCGAGCTCCAAGGAACCAGCCGAGCATAAGGGCCTGTTCAGATTCC
CTCCCCTCCGCAACTCCACTCCCGGAGCTGGTGGAGCAGCAGTGCAAAATCGCGGAGTGGGGACGGAGGTGCTCCACAAA
TCCTAAGATTTCACAGAGCGGGAGGATTGCCGAACAGCCCCCA-------------------------------------
--------------------------------------------------------------------------------
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------------------AGTGTCATCTCGGCTCTTCACAGGAACAAGAAG-C-TTCCAATAGCTTTTC-----------
--------------------------------------------------------------------------------
--------------------------------------------ATGTGCCAGAGGAAGTTTGTCATCACTGGGTCGGCT
CATCT------------------ATACACTCTCAACTTGAACTCATGTTTCCGGTGCATCCCATGCCTACCACTGATCCT
AGTCATCATAGACCAAGCTAAC-----TTCTCAATGCATTTAGTGGCAGCAATACCAA-AAAAGATGGGCAACCTTACAT
TTTTGCGGTGGAGTTTTGAGTGTTCACCTTATATGCTCACTAGAACTATGTAGAGGTGCAAATGAGTGATTCAAAATTGT
ATTTATGGGTCATATGTTATTGGTTTCACTACCTCACCAGCCATCTGTCCACTT----AACTCCTTG-ATGAGTACAATT
GCTATAAGAGCTACCAATCCCAACGATATATTTTATTTACATATCTACCACGGTGCTAT--GTAGTCTAGGTGTAGTTAT
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--------------------------
>chr1D_1413
AAC-----------------------------------------------------------------------------
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----------------------ACAAAGCACGCCATCCATGTTTCCTGTAGTTTTCCAGCTTCTGCGTGTC-TCAGTT--
--GGTAGCCCTGGCATCTTGTTGTTTTGGTGCTGGATGAATATGAGTTTATGAACACACGAGTTATGCGAAAGTATGATT
TTATTTGGTTGTGTGTTGCCCCTGATGGTTACAGTTTATGTTGTT---ATCCTTTTGGTCAGAACTCAACCTCTTGTTTT
CAAGAATAGGAGCTGAGATTCTCCAGTCTAGACAAATAAAGAACCAGTGCAATCCTTATTGAAATTGCGGCAAAAGCTTC
ATTGAAGCAGGAGGATTGCAAATAGAAACCCCAAAGTAGTTGAAATAGCGGCAAAAGCTTCATTGAAGCAAGAGGGTTGC
AAAT-------AGAAACCCCAAAGTAGTAGTACTGTACTCTGACAAGTCACAAGATCAGTGTTCTTAGGTGTTTTGCTCT
TGGCTCTGGCTAACACCCAAGTTAGTAAGCTGGAAAGTACTTCTCTCATTCCATTTCTCCCTTGAGACGAGCACCTGGCA
TTTCTGACCATCATCTTCGCACAGAGGCTGCATTCCTCGACCACCATCACTATAGAAGGATACCTGGCGGTGCGTGCCAG
CGCTCGGTTGGACGGTGTCACGTGGAGGAGCGCCTATGGTCAGGCCCTGGGGATGTAACCGAATCGCTGAATCTCGTTAA
CGAATCTCGGTGTCATTTTTGTGTGATTGCTTTCAGTGCTCGGTAGATCGAGTAAGCGTCTCAGATTTTTCTAATAGTGA
TGAAATTTGATTGAAAGCG-------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGATGAAAACAAGCTTAGAAAAAATGTGTGAGAGATAGGGGAAGAAAAAAGAAATGCAA
CAAGTAATTATAAGTCAAACTCACCA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTCTAA
TTATTTCCTGCAGTACATATATTTTGTGTGCCGTAAGCCAAGTCTATTATATCGGGTACTCGGCTTACATCCAGCACCGT
CACGGACCCGTTAGTGGGGGGTGCGCGGGCCATGTGGCAGTTAAGTTTGCCGTATACTTTATCATAAGCCGAGTCCGTTT
TCAATGCACCTTCGGCTTACAGGGATGTACGCCAAGTCCTGTAAATAAGCTGAGTGCCTAGCCGTTGTATCCTCGTGTGC
CCTTTAGGGCATACTCGGCTTACGTGGAAAGAAGCCGTGAGCCCGTGTTTTAACACTCAGCTTACTACATAATACAAGGC
AACTTGTGTTTTTCCTGTAGTGCCTTCGCGGCTCTTCAAAGGAGCATGAAGCC-TTCCAATAGCTTTGC-----------
--------------------------------------------------------------------------------
--------------------------------------------CTATGTCAGAGGAGGTTTGTCAGCCATGGACCGGCT
CATAT------------------ACACACTCTCAAGTTGAACTCATGTTCCTGGTGCATCCCATGCCTACCATTGATCAT
AGTCCTTATAGATCAAGCTAACACCACTTCTCTATGCACCTAGTGGTAGCAACAACTACAA-----GGGCAACCTTACAT
TTTTTAGGTGAAGTTTTGAGTGTTCACCTTATATGCTCACTAGAACTATGTAGAGGTGCAAATCACTAATTCAAAATTGT
ATTTATGGGTCATGTGTTATTGGTTTCACTACCTCACCAGCCACCTGTCCACTTACTTAACTCCATG-ATGGGTACAATT
GCTATAAGAGCTACCAATCCTAGCGATATATTTTATTTACATATCTACTATGGTGCTAT--GTAAGCTACGTGTAGTTAT
GAACTACTATAATGTAAGGATCCTGCACATGACCAACAATGACAGATGATGTATATGTGTAGTTAAAAACAG-TTTATTG
TGATATGTCTAATTACAACTATGAATATCTATCTGATGCACTAACAATCCGTTGTGATATGTTTACATATAGTTATGGTC
ATTTGTCAGCTACCTCACAATTATACAAATTTACGGGCTTGTACATGCAAATTTATTGATTGTGCTCTAGTATAAAAAAA
TGTCCATCAACTACTGATGGGATGTTATAATCGTACTATGAACTCGCAGTCGCTTTGCTTGCACTTTCCCTAGTTATAAG
TGATCCAGAACTAATGCTCTGTTT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>SNPs
--------------------S---SSS-SSSS-------------SS--S-S----------------------------
------S--------------SSSSSS---------S--SS--S--------------------S---------------
------------------------------S---SS--------S-----------------------------------
-----------------------------------S--------SS-SSS--S------S-S------------------
--S---S------------------------S------------------------------------------------
--------------------------------------------------S------S----------------------
--------------------------------------------------------------------------------
S----------S-S----------------------------------------------S---S-----S----S----
S-------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S------------S--S-----------------------S---
-------S------------------------------------------------------------------------
------------------------------------------S-------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------S-----
S-------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------S-----
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-S-S-----------------------------------SS---------------------------------------
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-----------------S------S--------S-------S--------------------------------------
-------------------------------S------------------------------------------------
----------------S-----------------S-----------------------S---------------------
--------------------------------------------------S-S-S---------S-----SSS---S---
------SS---S-------------S-S-S---S-----S--S-S--S-S---------------S--------------
---------------S----------S-------SS----------------------------S-------SS----S-
---------SS----------S-------------S--------S---S-S-----S--------------S---S----
--S---SS------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_106
--------------------------------------------------------------------------------
------CGGTGATCCAACCCAAGTCA------------------------------------------------------
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>reverse_3946
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-------------------------AACCCATCAGATGCGCTCAT-----------------------------------
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--------------------------------------------------------------------------------
--------------------------
