>input_sequence_81977
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-----------------------------------------------------------ATGCATGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGCTCTGCGGTGATCTTCGCGGGCGGCTCGCCGGTGACGGGGGTCTCGCTGGATATCACCGT
CTCCTACCTGGGCGCCGCCCGTGCAAACGTACGATACGAGTATATGTCTTCCCGCGTGTCATGTGTACTAG---------
---------------------------------------------CATAATCTTCCTTGTGAGTTGGGACTTG-------
GGACTAACAAACAGAGGCATGCTGCA------TCCACGCAGGAGGAGATCGAGATCGAGGCTCGGGTCCTCGGCATGGGC
GACAAGACGGGGTGCGTGACCGTGGAGGTGAGGAGGAAGGACACCGACCAGGTGCTCGCGCACGGCCGCCACACCAAGTA
TCTCGCCAACGTCTCCAGTAAACTCTGA----------------------------------------------------
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>chr5D_1_TraesCS5D01G377600
CATCATCTTTATACTACTTTTCTTTTTCCAAATACCCTTATATACTACATTACCGACTGTTATACTTGTTGAACATCCGG
GAGCAGATGTTGCCGTGGCTATGAGGGTGTGCGTCCTAGCAGTAGTTGGCGTGTTCGAATGTAGAGGTCTAAGCTTTTTT
CTTTTAGTTTTCACGTCAGGACCTACTTGTCATACAACAAAAAGAAAAAAACATCTACCACGTGAACATGGTCTTTTTTG
TGAGAAATAATTTTTTTGAGGGGTTTTTGTTGCCAAGAAAACAGGCCACACGCTTCAAGTCGCTGACAGCGGGCCCCATG
CCACGCTGGCATGCCAAGTCAGCGTTGATTTCCTATCCATACGCGATTAGGACCGTATTTGCACAACCGAGCCAAGTTAT
TGCACCAGTTCAATGTATGCCACAAGTTCTAGTACTAAAGTGATCGTTTACGCCAAGTTCAAGCACCACCGGTGTAATTG
ACTCACTACGAAACTACAATGAGTATATACATCGCGTGTCATTTACTAAAGGCAACTGTTTTCATCGCGAACATTGGTTT
AGCGGGCCTCTACACCATTTGACGCAACAGGTCACCGTGTTTTCTATTAGATGCGGATTAAACCATGGATTTTTTTCATC
GCGAACATGGCTTTAGCGTGCCTCTGCGCCATTTGGCGCAACGGGTCCACTAGTATCTAGAAAGCCTGCGGATGGCGAAG
CTCGAAGGCGGCAACAAGAGCAAGG--------ATGGAGAGGTGGCACGACCGTTCCTTGGGCCACCGGCTGTACGACGC
CTTCACCGTAGCCGGCCTCCGGGTTGAGGCCATCGTACCCGGCCGCCTCCTCTGCTCCTTCATGGCCCCTCCTCGCCTCA
CGTCGGTACGTAGTCCTAGGCA-----CGGCCGTGCTCACGG--GAGTACTGTATGCAGGAGCGTTGAACTGAAAATCGT
CTATACCCTGTCTGTGCT----TGTACGTCCGGCGCAATCGAAGAGCGCCAGCAACCGTATGCATGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGCTCTGCGGTGATCTTCGCGGGCGGCTCGCCGGTGACGGGGGTCTCGCTGGATATCACCGT
CTCCTACCTGGGCGCCGCCCGTGCAAACGTACGATACGAGTATATGTCTTCCCGCGTGTCATGTGTACTAG---------
---------------------------------------------CATAATCTTCCTTGTGAGTTGGGACTTG-------
GGACTAACAAACAGAGGCATGCTGCA------TCCACGCAGGAGGAGATCGAGATCGAGGCTCGGGTCCTCGGCATGGGC
GACAAGACGGGGTGCGTGACCGTGGAGGTGAGGAGGAAGGACACCGACCAGGTGCTCGCGCACGGCCGCCACACCAAGTA
TCTCGCCAACGTCTCCAGTAAACTCTGAGGGTCCTTCCCATCCCGGAAGAGCTACATGTTACACATACGACGGTTGTGTT
TTTTCTTCTTTTTTAAACATCATAAAACGGTTGTCTTTGCTAGACAGCTATGTTGATATTCTACCAGGCACGGAATATTC
CATGCATCAATCCGTCGTCGTTCGTGATTGCTTTGAGATCCATGTTATATATTTTCTGGTTGTTGTCAAAATTTTATCTC
GTTTCAAAATGTTTCGTTTGTTTTTTCTTGTTTCAACGTGTATCATCATGTTTCATTGTGTGTCAATAAAAGAGAGAATG
CACTT-TTTTTTTATCAGCTTTGCTGATACACGATGACACACAGTGAAATATTAAGATACATTTTGGAACGAGAAAAGGC
GCCAACGTAATGCTTTGAAACGGATAAATTATAAAAATAATCAAAAAAGTAGCATGAATCTCAAATCAGCCACGGACGGT
GAATCCATGCTCGGGATACTCCATCCGCAGT----AGAATAAAAGTCATCCTACC------GTGCATGGATCCACCATT-
-----CGTGATTACGTTGGCAGTAGAATGGATTTTCTCCTATATTAGTGCAAT---------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTATAACAAAGTATGTGA---------
-------------------------------------------------------------TAATAAATAATGGACAT--
--CGACCGCGGACGACCAATCATGGACCA---GGTGTCGCTGTGATCCATCCCCAGCATGGAGTCTGATCAGACAGTGAG
CAGCGCATCGCGGGGCAAACTGTTTTGCCGGTATATGAG--CTGTACAATTTTGGTAAATAAAAGAGTGTGTGGTGTAAA
AAGAGGACTATATGGCATGATGACCTACTCATCTACAT------------------------------------------
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----------------------------------------------------GATGATTGAAAGTGTGAAAAGCGATTTA
CTTGATAATAATCTTAACTCCTGTCTATTAAGGCCGGGGGCACGCCTCCTTTTCGAAAAAAAGAAGAAAAAAAAACTCCT
GTTTATTAAGAACGGTTACACTTAGAGAAGAAAGGGAACTTCGAGATCCTCAAGACCTTATAAGTGAGAAGTCAGCCTTG
GCACAACGGTAGACAACA
>chr5D_699
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----------------------------------------------------------AGAGAGGCTGCAGATGGCGAAG
CTCGAAGGCGGCAGCAAGGATGTTGACGAAGCTATGGAGAGGTGGCACAACCGTTCCTTGGCCCACCGGCTGTACGACGC
CTTCACCGTAGCCGGCCTCCGCGTTGAGGCCGTCGAACCCGGCCACCTCCTCTGCTCCTTCATGGTCCCTCCTCGCCTCA
CGTCGGTACGTAGTCCAAGCCA-----TGGCCGTGCTCGCGG--GAGTAGTGTATGTAGGAGCGTTCAATATAAAATCGT
GTATACCTGTG-TG--------TGCACGTCCGGCGAAATCGAAGAGCGCCAGCAACCGCATGCATGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGGTCTGCGGTGATCTTCGCCGGCGGCTCGCCGGTGACTGGGGTCTCGCTGGATATCAACGT
CTCCTACCTGGGCGCCGCCCGTGCAAACGTACGATACGACTTTATGTCTTTCCGCGTTTCATC--TACTCG---------
---------------------------------------------TATAATCTTCCTTGTGAGTTGT-------------
-GACTAACAAACGGAGGCATGCTGCA------TCCATGCAGGAGGAGATCGAGATCGAGGCTCGGGTGCTCGGCATCGGC
GACAAGACAGGGTGCGTGACCGTGGAAGTGAGGAGGAAGGACACCGGCCAGGTGCTCGCGCACGGCCGCCACACCAAGTA
TCTCGCCAACGTCTCCAGTAAACTCTGAGGGTCCTTCC------------------------------------------
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>chr5D_699
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----------------------------------------------------------AGAGAGCCTGCAGATGGCGAAG
CTCGAAGGCGGCAGCAAGGATGTTTACGAAGCCATGCAGAGGTGGCACAACCGTTCCTTGGGCCACCGGCTGTACGACGC
CTTCACCGTAGCTGGCCTCCGCGTCGAGGCCATCGAACCCGGCCGCCTTCTCTGCTCCTTCATGGTCCCTCCTCGCCTCA
CGTCGGTACGTAGTCCTAGCCA-----CGGCCGTGCTCACGG--GAGTACTGTATGCAGGAGCGTTGAACTGAAAATCGT
CTATACCTGTG-TGTGCT----TGTACGTCCGACGCAATCGAAGAGCGCCAGCAACCGTATGCATGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGCTCTGCGGTAATCTTCACGGGCGGCTCGCCGGTGACAGGCGTCTCGCTGGATATCACCGT
CTCCTACCTGGGCGCCGCCCATGCAAACGTACGATACGAGTATATGTCTTCCAGCGTTTCATGTATATACTCCCTCCGTA
AATTAATATAAGAGCGTTTAGATCACTGTTACAGTGGAAGTACTATATAATCTTCCTTGTGAGTTGGGACTTG-------
GGACTAACAAACGGAGGCATGCTGCACCGATATCCATGTAGGAGGAGATCGAGGTGGAGGCCCGGGTCCTCGGCATCGGC
GACAAGACGGGGTGCGTAACCGTGGAGGTGAGGAGGAAGGACACCGGCCAGGTGCTCGCGCACGGCCGCCACACCAAGTA
TCTCGCCAACGTCTCCAGTAAACTGTGAGGGTCCTTCCCATCCTGGAAGAGCTGCAGTGTA-------------------
----------------------TAGAACGGTTGTCTTTGCTGGCCACCGATCTTGATATTCTACCGAGCACGGAATATTC
CATGCATCGATCCA---TCATTCATGTTTGCTTTGAGATTCGTGTTGCTTTTC------TTGTTATCAAAA-TTTATCTC
ATTTCAAAATGTTTTGTTTGCTTTTTCTTGTTTCAACGTGTATCATCATGTTTCATTGTGTGTCAATAAAAA--TGAATG
CA--------CTTATCAGCTTTGCTGATACACGATGACACACAATAAAATATTAAGATTCATTTTGGAACGAGGT-----
--------------------------------------------------------------AAATCAGCCACGGACGAT
TAATCCATGCTCGGGATACCCCCATGCGCGGTACAATAATAAAAGTCATTCTAGCTACCGTGTGTATGGATCCACCATA-
-----TGTGATTACTTTGACGGTAGAATT-----TCTCATATGTTGATGCAATGTACTCTCTCCGTTTCTAAATATAAGT
TTTTTTAAAGATTTCAATATAGACTACATACGGATGTATATAAATATATTTTAGAATGTACATTCACTCATTTTGCTCCG
TATGTAGTCCATATTGAAATATCTAAAAAAACTTATATTTAGGAACAAAAGGAGTACAACAAAGTAAGTATGTGAGTATA
AGTATGTATGTATGTGTGTGTGCGCGCGGGGGCACACACTAATAAATAAAGGACATGACACTAATAAATAAAGGACATGA
CTCGACCGCGAACGACTAATGTATA---A---TGTGTCGCAGTGATCCA-CCCCAGCATGGAGTCTGATCAGACAGTGAG
CAGCGCGTCGCGCGGCAAACTGCTTTGCCGTTATATGCG--C--TACAATTTTGGTGAATAAAAGAGTGTG--GTGTAAA
AAGAGGACTATATGGCATGGAGAGCAACTCATCTACAT------------------------------------------
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>chr5A_699
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----------------------------------------------------------AGAGAAGCTGCAGATGGCGAAG
CTCGAAGGCGGCAGCAAGGATGTTGACGAAGCCATGGAGAAGTGGCACAACGGTTCCTTGAGCCACCGGCTGTACGACGT
CTTCACCGTAGCCGGCCTCCGCGTGGAGGCCATCGAACCCGGCCGCCTCCTCTGCTCCTTCATGGTCCCTGCTCGCCTCA
CGTCGGTACGTAGTCCTAGCCA-----CGGCCGTGCTCGCGG--GAGTAGTGTATGCAGGAGCGTTGAACTGAAAATCGT
GTATACCTGTG-TGGCTGTGTGTGCATGTCCGGCGCATGCGAAGAGCGCCAGCAACCGTATGCAGGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGGTCTGCGGTGATCTTCGCGGGCGGCTCGCCGGTGACGGGGGTCTCGCTGGATATCACCGT
CTCCTACCTGGGCGCCGCCCGTGCAAACGTACGATACGAGTGCATGTCTTCCTGCATTTCATGTATACATATAC------
---------------------------------------------TATAATCTTCCTTGTGAC-----------------
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------------------------------------------------------------------TAAAAA--AGAATG
CACTTATTTTCTTATCAGATTTGCTGATACACGATGACACACAGTGGGATATTAAGATACATTTTGGAACAAGAAAAAAA
GCCAATGCAATGCTTTGAAACAGATAAATTCTAAAAATAAAATAAAAATG-GCATGAATCTCAAATCAGCCACGGACGGT
GAATCCATGCACGGGATACCCGATGCGCGCT----AGAATACAAGTCATTCTGCC------GTGCATGGATCCACCGTCC
CAGAGCGTGATTACTTTAGCAGTAGAATG-----ACGTTTATGTTGATGCAAT---------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTATAACAAGGTATGCATGC-------
---ATGTATGTATGTACTGTATGTT-----------------------------------CTAATAAATAAAGGACATGA
CTGGACCGCGAACGACCAATCATGGACCATCAGGTGTCGGTGTGATCCA-CCGCAGCATGGAATCTGATCACACAGTCAG
CAGCGCGTAGCGCGGCAATCTGTTTTGCCGGTATATGCGCTC--TACGATTTTGGTAAATACAAGAGTGTGTGGTGTAAA
AAGAGGACTGTATGGCATGTTGACCTACTCATATACTCTCTTCATTCGAAGAAGCTTGTCCCTTAAATGAATGTATCTAG
CATCAAGTTATTGCTACATACATTCATTTGAGAGACAAGGTTTTCGGATAGAGGGAGTACATGATCATCCTTTGATTCAT
AGGATAAAAAAGTAATAGAAATAGAAAAATCATAGAAAATGAGACGACATATATCTGAAATCTTATAAATAGGAATAGAA
AGGAAGATGCCCTTTGGTTTACATCATAGGATTTTTTTTTCCCATTAAGTCTAGGCTAATGTTTATTTTCCTATGAAATG
TGGCGGATAGAAAGAATTCCTCCATAGGAATAGGATTCTATTCCTACAAACCAAAGAACTCTAAAAGATTTTTTCCTGTA
CCAATCCTATCTTATGAGATTCCTGCAAAATTCATACAAACCAAAGGAGACCGATGATTAAAGGTGTGAAAAGCGATTTA
CTTGATCATAGTCTT-ACTCTTGTCTATTA--------------------------------------------------
--------AGAACGGTTACACTTAGAGAAGAAAGGGAACCTCGAGATC--------------------------------
------------------
>chr5A_704
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---------------------------------------------------------------GCCTGCAGATGGCGAAG
CTCGAAGGCGGCAGCAAGGATGTTGACGAAGCCATGGAGAGGTGGCACAACCGTTCCTTGGGCCACCGGCTGTACGACGC
CTTCACCGTAGCCGGCCTCCGCGTGGAGACCATCGAACCCGGCCGCCTCCTCTGCTCCTTCATGGTCCCTCCTCGCCTCA
CGTCGGTACGTAGTCCTAGCCA-----GGGCCGTGCTCGCGG--GAGTAGTGTATGTAGGAGCTTTGAACTGAAAATCGT
GTATGCCTGTG-TG--------CGCATGTCCCGCGCAACCGAAGAGCGCCAGCAACCGCATGCATGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGGTCTGCTGTGTTCTTCGCCGGCGGCTCGCCGGTGACGGGGGTCTCACTGGATATCACCGT
CTCCTACCTGGGCGCCGCCCGTGCAAACGTACTATACGAGTATATGTCTTCCCGCGT-----------------------
-----------------------------------------ACTATATAATCCTTCTTGTGAGTTGGGACTTG-------
GGACTAACAAACGGAGGCATGCTGCA------TCCATGTAGGAGGAGATCGAGATCGAGGCTCGGGTGCTCGGCATTGGC
GACAAGACGGGGTGCGTGACCGTGGAGGTGAGGAGGAAGGACACCGGCCAGGTGCTCGCGCACGGCCGCCACACCAAGTA
TCTCGCCAACGTCTCCAGTAAACTGTGAGGGTCCTTCCTATCATGGAAGGGCCACAGTGTAGACG---------------
--------------------CGTAAAACGGTTGTCTTT------------------------------------------
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>chr5B_746
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---------------------------------ATGGAGAGGTGGCACGACCGTTCCTTGGGCCACCGGCTGTACGACGC
CTTCACCGTAGCCGGCCTCCGCGTCGAGGCCATTGAACCCGGCCGCCTCCTCTGCTCCTTCATGGTCCCTCCTCGCCTCA
CGTCGGTACGTACATAGCCAACCATCCCGGCCGTGCTCACGGGAGAGTACTGTATGTAGGAGCGTTGAACTGAACAGTGT
ATATATAC-------CTGTGTGTGCACGTCCGGCGCAATCGAAGAGCGCCAGCAACCGTATGCACGGAGGCGCGGTGGCG
TCGCTGGTGGACCTGGTGGGGTCTGCAGTGATCTTCGCCGGCGGCTCGCCGGTGACGGGGGTCTCGCTGGATATCACCGT
CTCCTACCTGGGCGCCGCCCGTGCAAACGTAGGATACGAGTATATGTCTTCCCG--T-----------------------
-----------------------------------------ACTATATAGTCTTCCTTGTGAGTTGGGACTTAGGAGTTA
GGACTAACAAACGGAGCCATGCTGCA------TCCATGTAGGAGGAGATCGAGGTAGAGGCTCGGGTCCTCGGCATCGGC
GACAAGACGGGGTGCGTGACCGTGGAGGTGAGGAGGAAGGACACCGGCCAGGTGCTCGCGCACGGCCGCCACACCAAGTA
TCTCGCCAACGTCTCCAGTAAACTCTGAGGGTCCTCCCTATCATGGAAGGGCCACAGTGTACACG---------------
--------------------CATAAAACGGTTGTCTTT------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S----------
-------------S----SSSSSS--------------------------------------------------------
---------------------S-------------S-----------------------------S--------------
-------------------S------------------------------------------------------------
--------SSSS--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S------S----S----------
---------------------------------------------S----------------------------------
------------S-----------------------S---------------------------------------S---
----------------------------------------------S---------------------------------
-------------------------------------------S------------SSS-----SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------------S-S--S-S--S-------------SS-------------
--------S----SSSS--S---S--S------------S-S----SSS-S-SSSSSSS-----S------S--------
S-------------S-----S--------------------------------------------------SSS------
----------S------------------------------------------------------------------SSS
-----S-S-------------S--------S---------SSS-----SSS-----------------------------
-------------------S----S---S--------------------S----------------------------S-
--------------S--------------SSSSS----S---S--SS---------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------SS---------
-----------------------------------------------------------------------S--------
----------S--------------------------------------S------------------------------
------S-----S------------------------S----SS------------------------------------
-------------------S------------------------------------------------------------
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-----------------------------------------------------------S--S-----------------
------S---S----S----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-------------------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_292
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--------------------------------CCAAGAAAACAGGCCACACG----------------------------
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>reverse_1839
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------------------------------------------------------------------------------GC
GCCAACGTAATGCTTTGA--------------------------------------------------------------
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